Skip to content

Commit a4f9024

Browse files
author
github-actions
committed
deploy: 158df0b 
1 parent 5720f01 commit a4f9024

28 files changed

+337
-12
lines changed

‎.doctrees/environment.pickle

1.17 KB
Binary file not shown.

‎.doctrees/mdakits.doctree

3.35 KB
Binary file not shown.

‎.doctrees/pytim.doctree

10.7 KB
Binary file not shown.

‎MDANCE.html

+1
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,7 @@
102102
</ul>
103103
</li>
104104
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎PathSimAnalysis.html

+1
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,7 @@
102102
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
103103
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
104104
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎ProLIF.html

+1
Original file line numberDiff line numberDiff line change
@@ -99,6 +99,7 @@
9999
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
100100
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
101101
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
102+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
102103
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
103104
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
104105
<li class="toctree-l2 current"><a class="current reference internal" href="#">ProLIF</a><ul>

‎_sources/mdakits.rst.txt

+16
Original file line numberDiff line numberDiff line change
@@ -65,6 +65,10 @@ Each of the MDAKits in the following table links to a page with more details abo
6565
- pores, ion channels, transporters, HOLE
6666
- `mdahole2 authors`_
6767
- |mdahole2_latest| |mdahole2_develop|
68+
* - :ref:`pytim`
69+
- Surface analysis, Intrinsic properties
70+
- `pytim authors`_
71+
- |pytim_latest| |pytim_develop|
6872
* - :ref:`mda-tui`
6973
- transformations, TUI
7074
- `mda-tui authors`_
@@ -111,6 +115,7 @@ Each of the MDAKits in the following table links to a page with more details abo
111115
maicos
112116
MDANCE
113117
mdahole2
118+
pytim
114119
mda-tui
115120
transport-analysis
116121
ProLIF
@@ -249,6 +254,17 @@ Each of the MDAKits in the following table links to a page with more details abo
249254
:alt: mdahole2 develop CI status
250255
:target: https://github.com/MDAnalysis/MDAKits/actions
251256

257+
.. _`pytim authors`:
258+
https://github.com/Marcello-Sega/pytim/blob/master/AUTHORS.md
259+
260+
.. |pytim_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
261+
:alt: pytim develop CI status
262+
:target: https://github.com/MDAnalysis/MDAKits/actions
263+
264+
.. |pytim_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
265+
:alt: pytim develop CI status
266+
:target: https://github.com/MDAnalysis/MDAKits/actions
267+
252268
.. _`mda-tui authors`:
253269
https://github.com/p-j-smith/mda-tui/blob/main/AUTHORS.md
254270

‎_sources/pytim.rst.txt

+47
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,47 @@
1+
.. _pytim:
2+
3+
************************************************
4+
pytim
5+
************************************************
6+
7+
| 🖋️ **Authors**: `pytim authors`_
8+
| 🏠 **Project home:** https://github.com/Marcello-Sega/pytim
9+
| 📖 **Documentation:** https://marcello-sega.github.io/pytim
10+
| ⚖️ **License:** GPL-3.0-or-later
11+
| 🔑 **Keywords:** Surface analysis, Intrinsic properties
12+
| 📑 **Publications:**
13+
| * https://doi.org/10.1002/jcc.25384
14+
| * https://onlinelibrary.wiley.com/doi/epdf/10.1002/jcc.25384
15+
| 🧪 **Tests (latest):** |pytim_latest|
16+
| 🧪 **Tests (develop):** |pytim_develop|
17+
| **Description:**
18+
| *Provides several methods for the detection of fluid interfaces and analysis of their properties.*
19+
20+
21+
22+
Installation instructions
23+
=========================
24+
25+
The latest version of pytim can be installed using the following:
26+
27+
.. code-block:: bash
28+
29+
pip install pytim
30+
31+
The source code of pytim can be installed using the following:
32+
33+
.. code-block:: bash
34+
35+
pip install git+https://github.com/Marcello-Sega/pytim@master
36+
37+
.. _`pytim authors`:
38+
https://github.com/Marcello-Sega/pytim/blob/master/AUTHORS.md
39+
40+
.. |pytim_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
41+
:alt: pytim develop CI status
42+
:target: https://github.com/MDAnalysis/MDAKits/actions
43+
44+
.. |pytim_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
45+
:alt: pytim develop CI status
46+
:target: https://github.com/MDAnalysis/MDAKits/actions
47+

‎lipidorderkit.html

+1
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,7 @@
102102
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
103103
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
104104
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎lipyds.html

+1
Original file line numberDiff line numberDiff line change
@@ -99,6 +99,7 @@
9999
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
100100
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
101101
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
102+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
102103
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
103104
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
104105
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎maicos.html

+1
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,7 @@
102102
</li>
103103
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
104104
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎mda-tui.html

+3-2
Original file line numberDiff line numberDiff line change
@@ -44,7 +44,7 @@
4444
<link rel="index" title="Index" href="genindex.html" />
4545
<link rel="search" title="Search" href="search.html" />
4646
<link rel="next" title="transport-analysis" href="transport-analysis.html" />
47-
<link rel="prev" title="mdahole2" href="mdahole2.html" />
47+
<link rel="prev" title="pytim" href="pytim.html" />
4848
</head>
4949

5050
<body class="wy-body-for-nav">
@@ -99,6 +99,7 @@
9999
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
100100
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
101101
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
102+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
102103
<li class="toctree-l2 current"><a class="current reference internal" href="#">mda-tui</a><ul>
103104
<li class="toctree-l3"><a class="reference internal" href="#installation-instructions">Installation instructions</a></li>
104105
</ul>
@@ -179,7 +180,7 @@ <h2>Installation instructions<a class="headerlink" href="#installation-instructi
179180
</div>
180181
</div>
181182
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
182-
<a href="mdahole2.html" class="btn btn-neutral float-left" title="mdahole2" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
183+
<a href="pytim.html" class="btn btn-neutral float-left" title="pytim" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
183184
<a href="transport-analysis.html" class="btn btn-neutral float-right" title="transport-analysis" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
184185
</div>
185186

‎mdachecker.html

+1
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,7 @@
102102
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
103103
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
104104
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎mdacli.html

+1
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,7 @@
102102
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
103103
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
104104
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎mdaencore.html

+1
Original file line numberDiff line numberDiff line change
@@ -99,6 +99,7 @@
9999
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
100100
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
101101
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
102+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
102103
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
103104
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
104105
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

‎mdahole2.html

+3-2
Original file line numberDiff line numberDiff line change
@@ -43,7 +43,7 @@
4343
<link rel="author" title="About these documents" href="about.html" />
4444
<link rel="index" title="Index" href="genindex.html" />
4545
<link rel="search" title="Search" href="search.html" />
46-
<link rel="next" title="mda-tui" href="mda-tui.html" />
46+
<link rel="next" title="pytim" href="pytim.html" />
4747
<link rel="prev" title="MDANCE" href="MDANCE.html" />
4848
</head>
4949

@@ -102,6 +102,7 @@
102102
<li class="toctree-l3"><a class="reference internal" href="#installation-instructions">Installation instructions</a></li>
103103
</ul>
104104
</li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>
@@ -182,7 +183,7 @@ <h2>Installation instructions<a class="headerlink" href="#installation-instructi
182183
</div>
183184
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
184185
<a href="MDANCE.html" class="btn btn-neutral float-left" title="MDANCE" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
185-
<a href="mda-tui.html" class="btn btn-neutral float-right" title="mda-tui" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
186+
<a href="pytim.html" class="btn btn-neutral float-right" title="pytim" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
186187
</div>
187188

188189
<hr/>

‎mdakit-sasa.html

+1
Original file line numberDiff line numberDiff line change
@@ -102,6 +102,7 @@
102102
<li class="toctree-l2"><a class="reference internal" href="maicos.html">maicos</a></li>
103103
<li class="toctree-l2"><a class="reference internal" href="MDANCE.html">MDANCE</a></li>
104104
<li class="toctree-l2"><a class="reference internal" href="mdahole2.html">mdahole2</a></li>
105+
<li class="toctree-l2"><a class="reference internal" href="pytim.html">pytim</a></li>
105106
<li class="toctree-l2"><a class="reference internal" href="mda-tui.html">mda-tui</a></li>
106107
<li class="toctree-l2"><a class="reference internal" href="transport-analysis.html">transport-analysis</a></li>
107108
<li class="toctree-l2"><a class="reference internal" href="ProLIF.html">ProLIF</a></li>

0 commit comments

Comments
 (0)