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@MICA-MNI

MICA-MNI

Multimodal Imaging and Conenctome Analysis Lab at the Montreal Neurological Institute.

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  1. BrainSpace Public

    BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

    Python 216 76

  2. BrainStat Public

    A statistics and context decoding toolbox for neuroimaging.

    Jupyter Notebook 102 23

  3. ENIGMA Public

    The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macro…

    Python 150 37

  4. micaopen Public

    Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

    Jupyter Notebook 75 40

  5. micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    Shell 101 34

  6. z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    Python 10 5

Repositories

Showing 10 of 28 repositories
  • MRI-Histology_framework_for_SWM_architecture Public

    This repository contains analysis notebooks for studying SWM microstructure using post-mortem and in-vivo datasets. It includes preprocessing, statistical analysis, and visualization scripts to assess intensity profiles from all datasets, gradients from qMRI, and their correlations with cortical geometry, functional and structural connectivity.

    Jupyter Notebook 2 MIT 0 0 0 Updated May 12, 2025
  • micaopen Public

    Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

    Jupyter Notebook 75 GPL-3.0 40 1 2 Updated May 9, 2025
  • micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    Shell 101 GPL-3.0 34 28 (3 issues need help) 5 Updated May 7, 2025
  • ENIGMA Public

    The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

    Python 150 BSD-3-Clause 37 9 1 Updated May 5, 2025
  • micaflow Public

    The easy way to process MRI data

    Python 0 0 0 0 Updated May 1, 2025
  • LAMAReg Public

    Label based Modality Agnostic Registration (LaMAR) is a MRI resgistration technique combines deep learning-based segmentation and numerical solutions to generate precise non linear warpfields

    Python 3 0 3 0 Updated Apr 22, 2025
  • z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    Python 10 BSD-3-Clause 5 6 0 Updated Apr 17, 2025
  • LAMAR-Models Public

    Models for LAMAR's synthseg backend

    0 0 0 0 Updated Apr 10, 2025
  • 2025_in-vivo_tauPET-mk6240_TLE Public

    This repository provides code for analyzing in-vivo tau aggregation in temporal lobe epilepsy (TLE) using 18F-MK6240 PET. It includes preprocessing, statistical analysis, and visualization scripts to assess tau deposition, connectivity patterns, and cognitive associations in TLE patients and controls.

    Jupyter Notebook 3 MIT 0 1 0 Updated Apr 4, 2025
  • MICA-7t Public

    scripts for 7t sorting and organizing

    Shell 8 GPL-3.0 0 0 0 Updated Mar 31, 2025
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