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<a href="_a_c_t_2gmwmi_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">/* Copyright (c) 2008-2022 the MRtrix3 contributors.</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment"> *</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment"> * This Source Code Form is subject to the terms of the Mozilla Public</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment"> * License, v. 2.0. If a copy of the MPL was not distributed with this</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment"> * file, You can obtain one at http://mozilla.org/MPL/2.0/.</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment"> *</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment"> * Covered Software is provided under this License on an "as is"</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment"> * basis, without warranty of any kind, either expressed, implied, or</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="comment"> * statutory, including, without limitation, warranties that the</span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment"> * Covered Software is free of defects, merchantable, fit for a</span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment"> * particular purpose or non-infringing.</span></div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment"> * See the Mozilla Public License v. 2.0 for more details.</span></div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment"> *</span></div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment"> * For more details, see http://www.mrtrix.org/.</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="comment"> */</span></div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="preprocessor">#ifndef __dwi_tractography_act_gmwmi_h__</span></div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="preprocessor">#define __dwi_tractography_act_gmwmi_h__</span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> </div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> </div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="preprocessor">#include "image.h"</span></div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include "<a class="code" href="core_2interp_2linear_8h.html">interp/linear.h</a>"</span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span><span class="preprocessor">#include "<a class="code" href="hermite_8h.html">math/hermite.h</a>"</span></div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="preprocessor">#include "<a class="code" href="act_8h.html">dwi/tractography/ACT/act.h</a>"</span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span><span class="preprocessor">#include "<a class="code" href="tissues_8h.html">dwi/tractography/ACT/tissues.h</a>"</span></div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> </div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> </div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"><a class="line" href="_a_c_t_2gmwmi_8h.html#a147f283bc30a3829a7b9cf27074fe282"> 28</a></span><span class="preprocessor">#define GMWMI_PERTURBATION 0.001 </span><span class="comment">// in mm</span></div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"><a class="line" href="_a_c_t_2gmwmi_8h.html#a971cd4f3056fb6ae8b6f653352839443"> 29</a></span><span class="preprocessor">#define GMWMI_MAX_ITERS_TO_FIND_BOUNDARY 10</span></div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"><a class="line" href="_a_c_t_2gmwmi_8h.html#adcd6086eedda90d9afbaa24e9d1dd581"> 30</a></span><span class="preprocessor">#define GMWMI_HERMITE_TENSION 0.1</span></div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> </div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> </div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> </div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespace_m_r.html">MR</a></div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span>{</div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="keyword">namespace </span>DWI</div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> {</div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="keyword">namespace </span>Tractography</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> {</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"><a class="line" href="namespace_m_r_1_1_d_w_i_1_1_tractography_1_1_seeding.html"> 41</a></span> <span class="keyword">namespace </span>Seeding</div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> {</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> <span class="keyword">class </span><a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_seeding_1_1_dynamic___a_c_t__additions.html">Dynamic_ACT_additions</a>;</div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> }</div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> </div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="keyword">namespace </span>ACT</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> {</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> </div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html"> 50</a></span> <span class="keyword">class </span><a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html">GMWMI_finder</a></div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> { <a class="code hl_define" href="src_2surface_2types_8h.html#a11d7eae3ab5178ebcf0e62cae9c26cd4">MEMALIGN</a>(<a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html">GMWMI_finder</a>)</div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> </div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> <span class="keyword">protected</span>:</div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> <span class="keyword">using</span> Interp = <a class="code hl_class" href="class_m_r_1_1_interp_1_1_linear_interp_3_01_image_type_00_01_linear_interp_processing_type_1_1_value_01_4.html">Interp::Linear<Image<float></a>>;</div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a62bb08c536b8d1a009babbeffdb080eb"> 57</a></span> <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a62bb08c536b8d1a009babbeffdb080eb">GMWMI_finder</a> (<span class="keyword">const</span> <a class="code hl_class" href="class_m_r_1_1_image.html">Image<float></a>& buffer) :</div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a07b58ee6f4b5fd755ecd0c7001d65173">interp_template</a> (buffer),</div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span> <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a03edc1ce45c21383febdb1f8a1689033">min_vox</a> (<a class="code hl_namespace" href="namespacestd.html">std</a>::min (buffer.spacing(0), <a class="code hl_namespace" href="namespacestd.html">std</a>::min (buffer.spacing(1), buffer.spacing(2)))) { }</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> </div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a20a26fe3707431f06c0aff39ee017764"> 61</a></span> <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a20a26fe3707431f06c0aff39ee017764">GMWMI_finder</a> (<span class="keyword">const</span> Interp& interp) :</div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a07b58ee6f4b5fd755ecd0c7001d65173">interp_template</a> (interp),</div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span> <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a03edc1ce45c21383febdb1f8a1689033">min_vox</a> (<a class="code hl_namespace" href="namespacestd.html">std</a>::min (interp.spacing(0), <a class="code hl_namespace" href="namespacestd.html">std</a>::min (interp.spacing(1), interp.spacing(2)))) { }</div>
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> </div>
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#aad27a951b4d040c19abbd7de4d6e8305"> 65</a></span> <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#aad27a951b4d040c19abbd7de4d6e8305">GMWMI_finder</a> (<span class="keyword">const</span> <a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html">GMWMI_finder</a>& that) :</div>
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a07b58ee6f4b5fd755ecd0c7001d65173">interp_template</a> (that.<a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a07b58ee6f4b5fd755ecd0c7001d65173">interp_template</a>),</div>
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a03edc1ce45c21383febdb1f8a1689033">min_vox</a> (that.<a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a03edc1ce45c21383febdb1f8a1689033">min_vox</a>) { }</div>
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> </div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> </div>
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#addc9ac7c3c0f40b9684315537774ad29"> 70</a></span> <span class="keywordtype">bool</span> <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#addc9ac7c3c0f40b9684315537774ad29">find_interface</a> (Eigen::Vector3f&) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a1e012fc0d0e4fb8fec7fd7268f206979"> 71</a></span> Eigen::Vector3f <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a1e012fc0d0e4fb8fec7fd7268f206979">normal</a> (<span class="keyword">const</span> Eigen::Vector3f&) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> </div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a3af509a642a7e8835f534ca0f3df0e19"> 74</a></span> Eigen::Vector3f <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a3af509a642a7e8835f534ca0f3df0e19">find_interface</a> (<span class="keyword">const</span> <a class="code hl_class" href="class_m_r_1_1vector.html">vector<Eigen::Vector3f></a>&, <span class="keyword">const</span> <span class="keywordtype">bool</span>) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#aa44a3abad554b4b952efc7563f33d8a2"> 75</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#aa44a3abad554b4b952efc7563f33d8a2">crop_track</a> (<a class="code hl_class" href="class_m_r_1_1vector.html">vector<Eigen::Vector3f></a>&) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> </div>
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <span class="keyword">protected</span>:</div>
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a07b58ee6f4b5fd755ecd0c7001d65173"> 79</a></span> <span class="keyword">const</span> Interp <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a07b58ee6f4b5fd755ecd0c7001d65173">interp_template</a>;</div>
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a03edc1ce45c21383febdb1f8a1689033"> 80</a></span> <span class="keyword">const</span> <span class="keywordtype">float</span> <a class="code hl_variable" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a03edc1ce45c21383febdb1f8a1689033">min_vox</a>;</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> </div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a8b994a9c511ffada54a8428b0bb43a03"> 83</a></span> <a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_tissues.html">Tissues</a> <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a8b994a9c511ffada54a8428b0bb43a03">get_tissues</a> (<span class="keyword">const</span> Eigen::Vector3f& p, Interp& interp)<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> <span class="keywordflow">if</span> (!interp.scanner (p))</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> <span class="keywordflow">return</span> <a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_tissues.html">Tissues</a> ();</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> <span class="keywordflow">return</span> <a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_tissues.html">Tissues</a> (interp);</div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> }</div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> </div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a54a3a68c45842cbcae40bece3af31739"> 89</a></span> <span class="keywordtype">bool</span> <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a54a3a68c45842cbcae40bece3af31739">find_interface</a> (Eigen::Vector3f&, Interp&) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a58aa3d752aeda9779658240acce74f6a"> 90</a></span> Eigen::Vector3f <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a58aa3d752aeda9779658240acce74f6a">get_normal</a> (<span class="keyword">const</span> Eigen::Vector3f&, Interp&) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a67f49ac8a2a4cc56ce340ffd33885a44"> 91</a></span> Eigen::Vector3f <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a67f49ac8a2a4cc56ce340ffd33885a44">get_cf_min_step</a> (<span class="keyword">const</span> Eigen::Vector3f&, Interp&) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a077d8efc3519d7178e2c7f6dbdd52824"> 93</a></span> Eigen::Vector3f <a class="code hl_function" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a077d8efc3519d7178e2c7f6dbdd52824">find_interface</a> (<span class="keyword">const</span> <a class="code hl_class" href="class_m_r_1_1vector.html">vector<Eigen::Vector3f></a>&, <span class="keyword">const</span> <span class="keywordtype">bool</span>, Interp&) <span class="keyword">const</span>;</div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> </div>
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> </div>
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#afe5b300952372c3a05c36bb3d02cee0b"> 96</a></span> <span class="keyword">friend</span> <span class="keyword">class </span><a class="code hl_friend" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#afe5b300952372c3a05c36bb3d02cee0b">Track_extender</a>;</div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"><a class="line" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a0cd80dfae9589ac2dd7d04ca9926dc1b"> 97</a></span> <span class="keyword">friend</span> <span class="keyword">class </span><a class="code hl_class" href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_seeding_1_1_dynamic___a_c_t__additions.html">Tractography::Seeding::Dynamic_ACT_additions</a>;</div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> </div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> };</div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> </div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> </div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> }</div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> }</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> }</div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span>}</div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> </div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span><span class="preprocessor">#endif</span></div>
<div class="ttc" id="aact_8h_html"><div class="ttname"><a href="act_8h.html">act.h</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html">MR::DWI::Tractography::ACT::GMWMI_finder</a></div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00050">gmwmi.h:51</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a03edc1ce45c21383febdb1f8a1689033"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a03edc1ce45c21383febdb1f8a1689033">MR::DWI::Tractography::ACT::GMWMI_finder::min_vox</a></div><div class="ttdeci">const float min_vox</div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00080">gmwmi.h:80</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a077d8efc3519d7178e2c7f6dbdd52824"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a077d8efc3519d7178e2c7f6dbdd52824">MR::DWI::Tractography::ACT::GMWMI_finder::find_interface</a></div><div class="ttdeci">Eigen::Vector3f find_interface(const vector< Eigen::Vector3f > &, const bool, Interp &) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a07b58ee6f4b5fd755ecd0c7001d65173"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a07b58ee6f4b5fd755ecd0c7001d65173">MR::DWI::Tractography::ACT::GMWMI_finder::interp_template</a></div><div class="ttdeci">const Interp interp_template</div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00079">gmwmi.h:79</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a1e012fc0d0e4fb8fec7fd7268f206979"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a1e012fc0d0e4fb8fec7fd7268f206979">MR::DWI::Tractography::ACT::GMWMI_finder::normal</a></div><div class="ttdeci">Eigen::Vector3f normal(const Eigen::Vector3f &) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a20a26fe3707431f06c0aff39ee017764"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a20a26fe3707431f06c0aff39ee017764">MR::DWI::Tractography::ACT::GMWMI_finder::GMWMI_finder</a></div><div class="ttdeci">GMWMI_finder(const Interp &interp)</div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00061">gmwmi.h:61</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a3af509a642a7e8835f534ca0f3df0e19"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a3af509a642a7e8835f534ca0f3df0e19">MR::DWI::Tractography::ACT::GMWMI_finder::find_interface</a></div><div class="ttdeci">Eigen::Vector3f find_interface(const vector< Eigen::Vector3f > &, const bool) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a54a3a68c45842cbcae40bece3af31739"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a54a3a68c45842cbcae40bece3af31739">MR::DWI::Tractography::ACT::GMWMI_finder::find_interface</a></div><div class="ttdeci">bool find_interface(Eigen::Vector3f &, Interp &) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a58aa3d752aeda9779658240acce74f6a"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a58aa3d752aeda9779658240acce74f6a">MR::DWI::Tractography::ACT::GMWMI_finder::get_normal</a></div><div class="ttdeci">Eigen::Vector3f get_normal(const Eigen::Vector3f &, Interp &) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a62bb08c536b8d1a009babbeffdb080eb"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a62bb08c536b8d1a009babbeffdb080eb">MR::DWI::Tractography::ACT::GMWMI_finder::GMWMI_finder</a></div><div class="ttdeci">GMWMI_finder(const Image< float > &buffer)</div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00057">gmwmi.h:57</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a67f49ac8a2a4cc56ce340ffd33885a44"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a67f49ac8a2a4cc56ce340ffd33885a44">MR::DWI::Tractography::ACT::GMWMI_finder::get_cf_min_step</a></div><div class="ttdeci">Eigen::Vector3f get_cf_min_step(const Eigen::Vector3f &, Interp &) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_a8b994a9c511ffada54a8428b0bb43a03"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#a8b994a9c511ffada54a8428b0bb43a03">MR::DWI::Tractography::ACT::GMWMI_finder::get_tissues</a></div><div class="ttdeci">Tissues get_tissues(const Eigen::Vector3f &p, Interp &interp) const</div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00083">gmwmi.h:83</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_aa44a3abad554b4b952efc7563f33d8a2"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#aa44a3abad554b4b952efc7563f33d8a2">MR::DWI::Tractography::ACT::GMWMI_finder::crop_track</a></div><div class="ttdeci">void crop_track(vector< Eigen::Vector3f > &) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_aad27a951b4d040c19abbd7de4d6e8305"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#aad27a951b4d040c19abbd7de4d6e8305">MR::DWI::Tractography::ACT::GMWMI_finder::GMWMI_finder</a></div><div class="ttdeci">GMWMI_finder(const GMWMI_finder &that)</div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00065">gmwmi.h:65</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_addc9ac7c3c0f40b9684315537774ad29"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#addc9ac7c3c0f40b9684315537774ad29">MR::DWI::Tractography::ACT::GMWMI_finder::find_interface</a></div><div class="ttdeci">bool find_interface(Eigen::Vector3f &) const</div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder_html_afe5b300952372c3a05c36bb3d02cee0b"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_g_m_w_m_i__finder.html#afe5b300952372c3a05c36bb3d02cee0b">MR::DWI::Tractography::ACT::GMWMI_finder::Track_extender</a></div><div class="ttdeci">friend class Track_extender</div><div class="ttdef"><b>Definition:</b> <a href="_a_c_t_2gmwmi_8h_source.html#l00096">gmwmi.h:96</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_tissues_html"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_a_c_t_1_1_tissues.html">MR::DWI::Tractography::ACT::Tissues</a></div><div class="ttdef"><b>Definition:</b> <a href="tissues_8h_source.html#l00037">tissues.h:37</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_d_w_i_1_1_tractography_1_1_seeding_1_1_dynamic___a_c_t__additions_html"><div class="ttname"><a href="class_m_r_1_1_d_w_i_1_1_tractography_1_1_seeding_1_1_dynamic___a_c_t__additions.html">MR::DWI::Tractography::Seeding::Dynamic_ACT_additions</a></div><div class="ttdef"><b>Definition:</b> <a href="dynamic_8h_source.html#l00186">dynamic.h:187</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_image_html"><div class="ttname"><a href="class_m_r_1_1_image.html">MR::Image< float ></a></div></div>
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