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<a href="cfe_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">/* Copyright (c) 2008-2022 the MRtrix3 contributors.</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment"> *</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment"> * This Source Code Form is subject to the terms of the Mozilla Public</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment"> * License, v. 2.0. If a copy of the MPL was not distributed with this</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment"> * file, You can obtain one at http://mozilla.org/MPL/2.0/.</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment"> *</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment"> * Covered Software is provided under this License on an "as is"</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment"> * basis, without warranty of any kind, either expressed, implied, or</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="comment"> * statutory, including, without limitation, warranties that the</span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment"> * Covered Software is free of defects, merchantable, fit for a</span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment"> * particular purpose or non-infringing.</span></div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment"> * See the Mozilla Public License v. 2.0 for more details.</span></div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment"> *</span></div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment"> * For more details, see http://www.mrtrix.org/.</span></div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="comment"> */</span></div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="preprocessor">#ifndef __stats_cfe_h__</span></div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="preprocessor">#define __stats_cfe_h__</span></div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> </div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="preprocessor">#include "types.h"</span></div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="preprocessor">#include "<a class="code" href="typedefs_8h.html">math/stats/typedefs.h</a>"</span></div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="preprocessor">#include "<a class="code" href="stats_2enhance_8h.html">stats/enhance.h</a>"</span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> </div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="preprocessor">#include "<a class="code" href="src_2fixel_2matrix_8h.html">fixel/matrix.h</a>"</span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> </div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespace_m_r.html">MR</a></div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span>{</div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> <span class="keyword">namespace </span>Stats</div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> {</div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> </div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> </div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span> <span class="keyword">using</span> <a class="code hl_typedef" href="namespace_m_r_1_1_stats.html#a20d7682ea21a45317e5f7628b36bc269">value_type</a> = <a class="code hl_typedef" href="namespace_m_r_1_1_math_1_1_stats.html#a5e7ca9d7689e3c74384e428ec1d9d9a9">Math::Stats::value_type</a>;</div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"><a class="line" href="namespace_m_r_1_1_stats.html#a4e9bb6174ef5abb7cf420bc113addc82"> 33</a></span> <span class="keyword">using</span> <a class="code hl_typedef" href="namespace_m_r_1_1_stats.html#a4e9bb6174ef5abb7cf420bc113addc82">direction_type</a> = Eigen::Matrix<value_type, 3, 1>;</div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> </div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"><a class="line" href="class_m_r_1_1_stats_1_1_c_f_e.html"> 37</a></span> <span class="keyword">class </span><a class="code hl_class" href="class_m_r_1_1_stats_1_1_c_f_e.html">CFE</a> : <span class="keyword">public</span> <a class="code hl_class" href="class_m_r_1_1_stats_1_1_enhancer_base.html">Stats::EnhancerBase</a> { <a class="code hl_define" href="src_2surface_2types_8h.html#a11d7eae3ab5178ebcf0e62cae9c26cd4">MEMALIGN</a> (<a class="code hl_class" href="class_m_r_1_1_stats_1_1_c_f_e.html">CFE</a>)</div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <a class="code hl_class" href="class_m_r_1_1_stats_1_1_c_f_e.html">CFE</a> (<span class="keyword">const</span> <a class="code hl_class" href="class_m_r_1_1_fixel_1_1_matrix_1_1_reader.html">Fixel::Matrix::Reader</a>& connectivity_matrix,</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespace_m_r_1_1_stats.html#a20d7682ea21a45317e5f7628b36bc269">value_type</a> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#acf4c95bd8ebdd74e87a4e57bfb0c9633">dh</a>, <span class="keyword">const</span> <a class="code hl_typedef" href="namespace_m_r_1_1_stats.html#a20d7682ea21a45317e5f7628b36bc269">value_type</a> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#a2fac90408bd8304b86f6169aa5db25ad">E</a>, <span class="keyword">const</span> <a class="code hl_typedef" href="namespace_m_r_1_1_stats.html#a20d7682ea21a45317e5f7628b36bc269">value_type</a> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#a1d2ae88184bc8b58e42d40324f3f889d">H</a>, <span class="keyword">const</span> <a class="code hl_typedef" href="namespace_m_r_1_1_stats.html#a20d7682ea21a45317e5f7628b36bc269">value_type</a> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#a0626094e641ace77b6974b3dccd75837">C</a>,</div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span> <span class="keyword">const</span> <span class="keywordtype">bool</span> norm);</div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keyword">virtual</span> <a class="code hl_class" href="class_m_r_1_1_stats_1_1_c_f_e.html">~CFE</a>() { }</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">protected</span>:</div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"><a class="line" href="class_m_r_1_1_stats_1_1_c_f_e.html#aed0001b0bd298f39cd903e440daa3ebb"> 45</a></span> <a class="code hl_class" href="class_m_r_1_1_fixel_1_1_matrix_1_1_reader.html">Fixel::Matrix::Reader</a> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#aed0001b0bd298f39cd903e440daa3ebb">matrix</a>;</div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"><a class="line" href="class_m_r_1_1_stats_1_1_c_f_e.html#a0626094e641ace77b6974b3dccd75837"> 46</a></span> <span class="keyword">const</span> <a class="code hl_typedef" href="namespace_m_r_1_1_stats.html#a20d7682ea21a45317e5f7628b36bc269">value_type</a> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#acf4c95bd8ebdd74e87a4e57bfb0c9633">dh</a>, <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#a2fac90408bd8304b86f6169aa5db25ad">E</a>, <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#a1d2ae88184bc8b58e42d40324f3f889d">H</a>, <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#a0626094e641ace77b6974b3dccd75837">C</a>;</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"><a class="line" href="class_m_r_1_1_stats_1_1_c_f_e.html#ae7ff24eebb8b39225d084f911326556b"> 47</a></span> <span class="keyword">const</span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#ae7ff24eebb8b39225d084f911326556b">normalise</a>;</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> </div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"><a class="line" href="class_m_r_1_1_stats_1_1_c_f_e.html#a38312ce92612210fe4b2b2c03318c3b6"> 49</a></span> <span class="keyword">mutable</span> <a class="code hl_class" href="class_m_r_1_1vector.html">vector<value_type></a> <a class="code hl_variable" href="class_m_r_1_1_stats_1_1_c_f_e.html#a38312ce92612210fe4b2b2c03318c3b6">h_pow_H</a>;</div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"><a class="line" href="class_m_r_1_1_stats_1_1_c_f_e.html#a4470a5894e6b4db4a64b88b2ff21a9c8"> 51</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="class_m_r_1_1_stats_1_1_c_f_e.html#a4470a5894e6b4db4a64b88b2ff21a9c8">operator() </a>(<a class="code hl_typedef" href="class_m_r_1_1_stats_1_1_enhancer_base.html#a544648b632c3027feeeb010ebd118c8c">in_column_type</a>, <a class="code hl_typedef" href="class_m_r_1_1_stats_1_1_enhancer_base.html#abcf47219aaf9521455b83ea07747df43">out_column_type</a>) <span class="keyword">const override</span>;</div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> };</div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> }</div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span>}</div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> </div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span><span class="preprocessor">#endif</span></div>
<div class="ttc" id="aclass_m_r_1_1_fixel_1_1_matrix_1_1_reader_html"><div class="ttname"><a href="class_m_r_1_1_fixel_1_1_matrix_1_1_reader.html">MR::Fixel::Matrix::Reader</a></div><div class="ttdef"><b>Definition:</b> <a href="src_2fixel_2matrix_8h_source.html#l00193">matrix.h:194</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html">MR::Stats::CFE</a></div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00037">cfe.h:37</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_a0626094e641ace77b6974b3dccd75837"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#a0626094e641ace77b6974b3dccd75837">MR::Stats::CFE::C</a></div><div class="ttdeci">const value_type C</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00046">cfe.h:46</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_a1d2ae88184bc8b58e42d40324f3f889d"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#a1d2ae88184bc8b58e42d40324f3f889d">MR::Stats::CFE::H</a></div><div class="ttdeci">const value_type H</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00046">cfe.h:46</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_a2fac90408bd8304b86f6169aa5db25ad"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#a2fac90408bd8304b86f6169aa5db25ad">MR::Stats::CFE::E</a></div><div class="ttdeci">const value_type E</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00046">cfe.h:46</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_a38312ce92612210fe4b2b2c03318c3b6"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#a38312ce92612210fe4b2b2c03318c3b6">MR::Stats::CFE::h_pow_H</a></div><div class="ttdeci">vector< value_type > h_pow_H</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00049">cfe.h:49</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_a4470a5894e6b4db4a64b88b2ff21a9c8"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#a4470a5894e6b4db4a64b88b2ff21a9c8">MR::Stats::CFE::operator()</a></div><div class="ttdeci">void operator()(in_column_type, out_column_type) const override</div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_acf4c95bd8ebdd74e87a4e57bfb0c9633"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#acf4c95bd8ebdd74e87a4e57bfb0c9633">MR::Stats::CFE::dh</a></div><div class="ttdeci">const value_type dh</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00046">cfe.h:46</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_ae7ff24eebb8b39225d084f911326556b"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#ae7ff24eebb8b39225d084f911326556b">MR::Stats::CFE::normalise</a></div><div class="ttdeci">const bool normalise</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00047">cfe.h:47</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_c_f_e_html_aed0001b0bd298f39cd903e440daa3ebb"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_c_f_e.html#aed0001b0bd298f39cd903e440daa3ebb">MR::Stats::CFE::matrix</a></div><div class="ttdeci">Fixel::Matrix::Reader matrix</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00045">cfe.h:45</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_enhancer_base_html"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_enhancer_base.html">MR::Stats::EnhancerBase</a></div><div class="ttdef"><b>Definition:</b> <a href="stats_2enhance_8h_source.html#l00031">enhance.h:32</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_enhancer_base_html_a544648b632c3027feeeb010ebd118c8c"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_enhancer_base.html#a544648b632c3027feeeb010ebd118c8c">MR::Stats::EnhancerBase::in_column_type</a></div><div class="ttdeci">Math::Stats::matrix_type::ConstColXpr in_column_type</div><div class="ttdef"><b>Definition:</b> <a href="stats_2enhance_8h_source.html#l00046">enhance.h:46</a></div></div>
<div class="ttc" id="aclass_m_r_1_1_stats_1_1_enhancer_base_html_abcf47219aaf9521455b83ea07747df43"><div class="ttname"><a href="class_m_r_1_1_stats_1_1_enhancer_base.html#abcf47219aaf9521455b83ea07747df43">MR::Stats::EnhancerBase::out_column_type</a></div><div class="ttdeci">Math::Stats::matrix_type::ColXpr out_column_type</div><div class="ttdef"><b>Definition:</b> <a href="stats_2enhance_8h_source.html#l00047">enhance.h:47</a></div></div>
<div class="ttc" id="aclass_m_r_1_1vector_html"><div class="ttname"><a href="class_m_r_1_1vector.html">MR::vector< value_type ></a></div></div>
<div class="ttc" id="anamespace_m_r_1_1_math_1_1_stats_html_a5e7ca9d7689e3c74384e428ec1d9d9a9"><div class="ttname"><a href="namespace_m_r_1_1_math_1_1_stats.html#a5e7ca9d7689e3c74384e428ec1d9d9a9">MR::Math::Stats::value_type</a></div><div class="ttdeci">MR::default_type value_type</div><div class="ttdef"><b>Definition:</b> <a href="typedefs_8h_source.html#l00033">typedefs.h:33</a></div></div>
<div class="ttc" id="anamespace_m_r_1_1_stats_html_a20d7682ea21a45317e5f7628b36bc269"><div class="ttname"><a href="namespace_m_r_1_1_stats.html#a20d7682ea21a45317e5f7628b36bc269">MR::Stats::value_type</a></div><div class="ttdeci">default_type value_type</div><div class="ttdef"><b>Definition:</b> <a href="stats_8h_source.html#l00035">stats.h:35</a></div></div>
<div class="ttc" id="anamespace_m_r_1_1_stats_html_a4e9bb6174ef5abb7cf420bc113addc82"><div class="ttname"><a href="namespace_m_r_1_1_stats.html#a4e9bb6174ef5abb7cf420bc113addc82">MR::Stats::direction_type</a></div><div class="ttdeci">Eigen::Matrix< value_type, 3, 1 > direction_type</div><div class="ttdef"><b>Definition:</b> <a href="cfe_8h_source.html#l00033">cfe.h:33</a></div></div>
<div class="ttc" id="anamespace_m_r_html"><div class="ttname"><a href="namespace_m_r.html">MR</a></div><div class="ttdef"><b>Definition:</b> <a href="core_2adapter_2base_8h_source.html#l00023">base.h:24</a></div></div>
<div class="ttc" id="asrc_2fixel_2matrix_8h_html"><div class="ttname"><a href="src_2fixel_2matrix_8h.html">matrix.h</a></div></div>
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<div class="ttc" id="astats_2enhance_8h_html"><div class="ttname"><a href="stats_2enhance_8h.html">enhance.h</a></div></div>
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