From f40fa18c504d113e57e187bd06488b473ab1cc13 Mon Sep 17 00:00:00 2001
From: mschwoerer <82171591+mschwoer@users.noreply.github.com>
Date: Thu, 20 Feb 2025 09:58:07 +0100
Subject: [PATCH 1/2] improve warning

---
 alphamap/sequenceplot.py | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/alphamap/sequenceplot.py b/alphamap/sequenceplot.py
index 4876440..64a2465 100644
--- a/alphamap/sequenceplot.py
+++ b/alphamap/sequenceplot.py
@@ -9,6 +9,7 @@
 # Cell
 import os
 import tempfile
+import warnings
 
 # Cell
 import pandas as pd
@@ -403,8 +404,8 @@ def plot_single_peptide_traces(df_plot,protein,fasta):
     HAS_STRUCTUREMAP = True
 except ModuleNotFoundError:
     HAS_STRUCTUREMAP = False
-    print("WARNING: dependency 'structuremap' is not installed.")
-
+    warnings.filterwarnings("module", category=ImportWarning)
+    warnings.warn("structuremap not installed. If you want to use its functionality, install alphamap with the 'structuremap' extra.", ImportWarning)
 
 # Cell
 def get_quality_category(s):

From f56a690f67a6e474a543cd03a473f46ffc94e05f Mon Sep 17 00:00:00 2001
From: mschwoerer <82171591+mschwoer@users.noreply.github.com>
Date: Thu, 20 Feb 2025 09:58:32 +0100
Subject: [PATCH 2/2] bump version

---
 .bumpversion.toml                          | 2 +-
 alphamap/__init__.py                       | 2 +-
 release/macos/Info.plist                   | 4 ++--
 release/macos/distribution.xml             | 2 +-
 release/windows/alphamap_innoinstaller.iss | 2 +-
 settings.ini                               | 2 +-
 6 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/.bumpversion.toml b/.bumpversion.toml
index d32825e..a1f62c4 100644
--- a/.bumpversion.toml
+++ b/.bumpversion.toml
@@ -1,5 +1,5 @@
 [tool.bumpversion]
-current_version = "0.1.13"
+current_version = "0.2.0"
 parse = """(?x)
     (?P<major>0|[1-9]\\d*)\\.
     (?P<minor>0|[1-9]\\d*)\\.
diff --git a/alphamap/__init__.py b/alphamap/__init__.py
index 3cb7d95..d3ec452 100644
--- a/alphamap/__init__.py
+++ b/alphamap/__init__.py
@@ -1 +1 @@
-__version__ = "0.1.13"
+__version__ = "0.2.0"
diff --git a/release/macos/Info.plist b/release/macos/Info.plist
index cad580e..9793597 100644
--- a/release/macos/Info.plist
+++ b/release/macos/Info.plist
@@ -9,9 +9,9 @@
 	<key>CFBundleIconFile</key>
 	<string>alpha_logo.icns</string>
 	<key>CFBundleIdentifier</key>
-	<string>alphamap.0.1.13</string>
+	<string>alphamap.0.2.0</string>
 	<key>CFBundleShortVersionString</key>
-	<string>0.1.13</string>
+	<string>0.2.0</string>
 	<key>CFBundleInfoDictionaryVersion</key>
 	<string>6.0</string>
 	<key>CFBundleName</key>
diff --git a/release/macos/distribution.xml b/release/macos/distribution.xml
index b89911b..39dbe5d 100755
--- a/release/macos/distribution.xml
+++ b/release/macos/distribution.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="utf-8" standalone="no"?>
 <installer-script minSpecVersion="1.000000">
-    <title>AlphaMap 0.1.13</title>
+    <title>AlphaMap 0.2.0</title>
     <background mime-type="image/png" file="alpha_logo.png" scaling="proportional"/>
     <welcome file="welcome.html" mime-type="text/html" />
     <conclusion file="conclusion.html" mime-type="text/html" />
diff --git a/release/windows/alphamap_innoinstaller.iss b/release/windows/alphamap_innoinstaller.iss
index a8ab965..a0528ca 100644
--- a/release/windows/alphamap_innoinstaller.iss
+++ b/release/windows/alphamap_innoinstaller.iss
@@ -5,7 +5,7 @@
 ; so all paths are given relative to the location of this .iss file.
 
 #define MyAppName "AlphaMap"
-#define MyAppVersion "0.1.13"
+#define MyAppVersion "0.2.0"
 #define MyAppPublisher "Max Planck Institute of Biochemistry, Mann department"
 #define MyAppURL "https://github.com/MannLabs/alphamap"
 #define MyAppExeName "alphamap_gui.exe"
diff --git a/settings.ini b/settings.ini
index 2d17ca9..1162d74 100644
--- a/settings.ini
+++ b/settings.ini
@@ -13,7 +13,7 @@ user = ibludau
 # author_email = email@example.com
 copyright = Mann Labs
 branch = master
-version = 0.1.13
+version = 0.2.0
 min_python = 3.8
 audience = Developers
 language = English