nbs/alpharaw_to_alphapept.ipynb

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   "source": [
    "%reload_ext autoreload\n",
    "%autoreload 2"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "from alpharaw.sciex import SciexWiffData\n",
    "from alpharaw.wrappers.alphapept_wrapper import parse_msdata_to_alphapept\n",
    "import numpy as np"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "def import_sciex_as_alphapept(sciex_wiff):\n",
    "    raw_data = SciexWiffData(centroided=False)\n",
    "    raw_data.import_raw(sciex_wiff)\n",
    "    return parse_msdata_to_alphapept(raw_data)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "13"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "query_data, creation_time = import_sciex_as_alphapept(\"/Users/zengwenfeng/Workspace/Data/zenoTOF/test_data/HeLa-500ng-0807Prep-IDA-Top50-10ms-GS2_60_09072021-60SPD_01.wiff\")\n",
    "len(query_data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'2021-07-09T23:30:19.0000000'"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "creation_time"
   ]
  }
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