Ci test #10
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| name: CI | |
| on: | |
| push: | |
| branches: [ '**' ] | |
| tags: [ '**' ] | |
| pull_request: | |
| branches: [ '**' ] | |
| jobs: | |
| ## Debug Build Job | |
| debug: | |
| name: Debug Build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Install Prerequisites (Ubuntu) | |
| run: | | |
| export PATH="$HOME/.local/bin:$PATH" | |
| pip3 install --upgrade pip | |
| sudo pip3 install cpplint | |
| sudo apt-get update | |
| sudo apt-get install -y cppcheck doxygen liblzma-dev libzstd-dev libbz2-dev | |
| - name: Install HTSLib | |
| run: | | |
| git clone https://github.com/samtools/htslib.git | |
| cd htslib | |
| git checkout tags/1.21 | |
| git submodule update --init --recursive | |
| autoreconf -i | |
| ./configure | |
| make -j | |
| sudo make install | |
| - name: Install LibBSC | |
| run: | | |
| git clone https://github.com/IlyaGrebnov/libbsc.git | |
| cd libbsc | |
| git checkout tags/v3.3.4 | |
| sed -i 's/clang++/g++/g' makefile | |
| make -j | |
| sudo make install | |
| - name: Run Source Code Tests | |
| run: ./ci/src_test.sh | |
| - name: Build Documentation | |
| run: ./ci/build.sh doc | |
| - name: Build Genie (Debug) | |
| run: ./ci/build.sh debug | |
| - name: Upload Debug Binaries | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: genie-debug-ubuntu2404-${{ github.sha }} | |
| path: cmake-build-debug/bin | |
| - name: Upload Documentation | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: genie-documentation-${{ github.sha }} | |
| path: cmake-build-debug/documentation/html | |
| ## Release Build Job | |
| release: | |
| name: Release Build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Install Prerequisites (Ubuntu) | |
| run: | | |
| export PATH="$HOME/.local/bin:$PATH" | |
| pip3 install --upgrade pip | |
| sudo pip3 install cpplint | |
| sudo apt-get update | |
| sudo apt-get install -y cppcheck doxygen liblzma-dev libzstd-dev libbz2-dev | |
| - name: Install HTSLib | |
| run: | | |
| git clone https://github.com/samtools/htslib.git | |
| cd htslib | |
| git checkout tags/1.21 | |
| git submodule update --init --recursive | |
| autoreconf -i | |
| ./configure | |
| make -j | |
| sudo make install | |
| - name: Install LibBSC | |
| run: | | |
| git clone https://github.com/IlyaGrebnov/libbsc.git | |
| cd libbsc | |
| git checkout tags/v3.3.4 | |
| sed -i 's/clang++/g++/g' makefile | |
| make -j | |
| sudo make install | |
| - name: Build Genie (Release) | |
| run: ./ci/build.sh release | |
| - name: Upload Release Binaries | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: genie-release-ubuntu2404-${{ github.sha }} | |
| path: cmake-build-release/bin | |
| ## Unit Tests Job | |
| unit: | |
| name: Unit Tests | |
| runs-on: ubuntu-latest | |
| needs: debug | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Install Prerequisites (Ubuntu) | |
| run: | | |
| export PATH="$HOME/.local/bin:$PATH" | |
| pip3 install --upgrade pip | |
| sudo pip3 install cpplint | |
| sudo apt-get update | |
| sudo apt-get install -y cppcheck doxygen liblzma-dev libzstd-dev libbz2-dev | |
| - name: Install HTSLib | |
| run: | | |
| git clone https://github.com/samtools/htslib.git | |
| cd htslib | |
| git checkout tags/1.21 | |
| git submodule update --init --recursive | |
| autoreconf -i | |
| ./configure | |
| make -j | |
| sudo make install | |
| - name: Download Debug Binaries | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: genie-debug-ubuntu2404-${{ github.sha }} | |
| path: cmake-build-debug/bin | |
| - name: Make Debug Binaries Executable | |
| run: chmod +x cmake-build-debug/bin/* | |
| - name: Run Unit Tests | |
| run: ci/unit_test.sh | |
| - name: Upload Utils Test Results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: utils-ubuntu2404-${{ github.sha }} | |
| path: cmake-build-debug/bin/utils_test.xml | |
| - name: Upload Coding Test Results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coding-ubuntu2404-${{ github.sha }} | |
| path: cmake-build-debug/bin/coding_test.xml | |
| - name: Upload Gabac Test Results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: gabac-ubuntu2404-${{ github.sha }} | |
| path: cmake-build-debug/bin/gabac_test.xml | |
| ## Conformance Roundtrip Tests Job | |
| conformance_roundtrip: | |
| name: Conformance Roundtrip Tests | |
| runs-on: ubuntu-latest | |
| needs: release | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Install Prerequisites (Ubuntu) | |
| run: | | |
| export PATH="$HOME/.local/bin:$PATH" | |
| pip3 install --upgrade pip | |
| sudo pip3 install cpplint | |
| sudo apt-get update | |
| sudo apt-get install -y cppcheck doxygen liblzma-dev libzstd-dev libbz2-dev | |
| - name: Install HTSLib | |
| run: | | |
| git clone https://github.com/samtools/htslib.git | |
| cd htslib | |
| git checkout tags/1.21 | |
| git submodule update --init --recursive | |
| autoreconf -i | |
| ./configure | |
| make -j | |
| sudo make install | |
| - name: Checkout Reference Decoder | |
| run: | | |
| mkdir ref-decoder | |
| cd ref-decoder | |
| git config --global init.defaultBranch master | |
| git config --global pull.ff only | |
| git init | |
| git config user.email "mitogen-group@gmail.com" | |
| git config user.name "Azure test script" | |
| git pull https://${{ secrets.EPFL_SCI_STI_MM_GITLAB_USERNAME }}:${{ secrets.EPFL_SCI_STI_MM_GITLAB_PASSWORD }}@git.mpeg.expert/MPEG/Genomic_Information_Representation/mpegg-reference-sw.git Fix_LA | |
| - name: Configure Reference Decoder (CMake) | |
| run: | | |
| cd ref-decoder | |
| sed -i '/set (CMAKE_C_FLAGS "-Wall -Werror ${CMAKE_C_FLAGS}")/s/^/#/' CMakeLists.txt | |
| cmake . | |
| - name: Build Reference Decoder | |
| run: | | |
| cd ref-decoder | |
| make --jobs | |
| - name: Download Release Binaries | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: genie-release-ubuntu2404-${{ github.sha }} | |
| path: cmake-build-release/bin | |
| - name: Make Release Binaries Executable | |
| run: chmod +x cmake-build-release/bin/* | |
| - name: Run Conformance Tests | |
| run: MPEGG_REF_DECODER=$PWD/ref-decoder/bin/decoder/mpegg-decoder-p2 ci/conformance_test.sh | |
| ## Docker Build and Push Job | |
| docker: | |
| name: Docker Build and Push | |
| runs-on: ubuntu-latest | |
| needs: [ unit, conformance_roundtrip ] | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| - name: Docker Login | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and Push Docker Image (develop branch) | |
| if: github.ref == 'refs/heads/develop' | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| file: '**/Dockerfile' | |
| push: true | |
| tags: muefab/genie:develop | |
| - name: Build and Push Docker Image (main branch) | |
| if: github.ref == 'refs/heads/main' | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| file: '**/Dockerfile' | |
| push: true | |
| tags: muefab/genie:latest | |
| - name: Build and Push Docker Image (Git tag) | |
| if: startsWith(github.ref, 'refs/tags/') | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| file: '**/Dockerfile' | |
| push: true | |
| tags: muefab/genie:${{ github.ref_name }} |