From 0b5ebbb58e94e30e19091ceeb90d75a02a758c53 Mon Sep 17 00:00:00 2001 From: Roy Francis Date: Mon, 5 Feb 2024 11:46:21 +0100 Subject: [PATCH] Fixed brain data installation --- containers/scripts/install_seurat_spatial.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/containers/scripts/install_seurat_spatial.sh b/containers/scripts/install_seurat_spatial.sh index a8f2b9c4..c62f679d 100755 --- a/containers/scripts/install_seurat_spatial.sh +++ b/containers/scripts/install_seurat_spatial.sh @@ -64,7 +64,7 @@ installGithub.r --update FALSE \ https://github.com/satijalab/seurat-data/tree/d6a8ce61ccb21a3b204f194d07009772c822791d ## Get brain data -Rscript -e 'if (!("stxBrain.SeuratData" %in% rownames(SeuratData::InstalledData()))) InstallData("stxBrain")' +Rscript -e 'if (!("stxBrain.SeuratData" %in% rownames(SeuratData::InstalledData()))) SeuratData::InstallData("stxBrain")' #wget seurat.nygenome.org/src/contrib/stxBrain.SeuratData_0.1.1.tar.gz \ # && R CMD INSTALL stxBrain.SeuratData_0.1.1.tar.gz \