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‎README.md

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This work is licensed under a [Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License](http://creativecommons.org/licenses/by-nc-sa/4.0/)
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## Table of Contents
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### AWS
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[README](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/README.md)
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**Submodule01 Biomarker Concepts**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule01_Biomarker_Concepts.ipynb#overview) | [Biomarker Concepts](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule01_Biomarker_Concepts.ipynb#biomarker-concepts) | [We Have a Biomarker. Now What?](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule01_Biomarker_Concepts.ipynb#we-have-a-biomarker.-now-what?) | [Examples](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule01_Biomarker_Concepts.ipynb#examples-of-common-clinical-biomarkers) | [Next Steps](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule01_Biomarker_Concepts.ipynb#next-steps)
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**Submodule02 Intro to R Data Structures**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule02_Intro_to_R_Data_Structures.ipynb#overview) | [Data Structures in R](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule02_Intro_to_R_Data_Structures.ipynb#data-structures-in-r) | [Why is this important?](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule02_Intro_to_R_Data_Structures.ipynb#why-is-this-important?)
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**Submodule03 Intro to Linear Models**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule03_Intro_to_Linear_Models.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule03_Intro_to_Linear_Models.ipynb#get-started) | [Conclusions](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule03_Intro_to_Linear_Models.ipynb#conclusions)
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**Submodule04 Intro to Exploratory Analysis**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule04_Intro_to_Exploratory_Analysis.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule04_Intro_to_Exploratory_Analysis.ipynb#get-started) | [Conclusions](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule04_Intro_to_Exploratory_Analysis.ipynb#conclusions)
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**Submodule05 IRI Case Study**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule05_IRI_Case_Study.ipynb#overview) | [Creating an Experimental Object](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule05_IRI_Case_Study.ipynb#creating-an-experimental-object) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule05_IRI_Case_Study.ipynb#conclusion)
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**Submodule06 Linear and Logistic Regression Biomarkers**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#get-started) | [Evaluating Biomarkers](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#evaluating-biomarkers-using-logistic-regression) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#conclusion)
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**Submodule07 Exploratory Proteomic Analysis**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule07_Exploratory_Proteomic_Analysis.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule07_Exploratory_Proteomic_Analysis.ipynb#get-started) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule07_Exploratory_Proteomic_Analysis.ipynb#conclusion)
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**Submodule08 Differential Analysis Proteomics**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule08_Differential_Analysis_Proteomics.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule08_Differential_Analysis_Proteomics.ipynb#get-started) | [Finishing Our Experiment](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule08_Differential_Analysis_Proteomics.ipynb#finishing-our-experiment) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule08_Differential_Analysis_Proteomics.ipynb#conclusion)
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**Submodule09 Biomarker Discovery Using ML**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule09_Biomarker_Discovery_using_ML.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule09_Biomarker_Discovery_using_ML.ipynb#get-started) | [Comparing Our Models](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule09_Biomarker_Discovery_using_ML.ipynb#comparing-our-models-with-metrics) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/AWS/Submodule09_Biomarker_Discovery_using_ML.ipynb#conclusion)
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### Google Cloud
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[README](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/README.md)
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**Submodule01 Biomarker Concepts**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule01_Biomarker_Concepts.ipynb#overview) | [Biomarker Concepts](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule01_Biomarker_Concepts.ipynb#biomarker-concepts) | [We Have a Biomarker. Now What?](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule01_Biomarker_Concepts.ipynb#we-have-a-biomarker.-now-what?) | [Examples](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule01_Biomarker_Concepts.ipynb#examples-of-common-clinical-biomarkers) | [Next Steps](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule01_Biomarker_Concepts.ipynb#next-steps)
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**Submodule02 Intro to R Data Structures**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule02_Intro_to_R_Data_Structures.ipynb#overview) | [Data Structures in R](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule02_Intro_to_R_Data_Structures.ipynb#data-structures-in-r) | [Why is this important?](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule02_Intro_to_R_Data_Structures.ipynb#why-is-this-important?)
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**Submodule03 Intro to Linear Models**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule03_Intro_to_Linear_Models.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule03_Intro_to_Linear_Models.ipynb#get-started) | [Conclusions](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule03_Intro_to_Linear_Models.ipynb#conclusions)
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**Submodule04 Intro to Exploratory Analysis**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule04_Intro_to_Exploratory_Analysis.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule04_Intro_to_Exploratory_Analysis.ipynb#get-started) | [Conclusions](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule04_Intro_to_Exploratory_Analysis.ipynb#conclusions)
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**Submodule05 IRI Case Study**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule05_IRI_Case_Study.ipynb#overview) | [Creating an Experimental Object](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule05_IRI_Case_Study.ipynb#creating-an-experimental-object) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule05_IRI_Case_Study.ipynb#conclusion)
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**Submodule06 Linear and Logistic Regression Biomarkers**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#get-started) | [Evaluating Biomarkers](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#evaluating-biomarkers-using-logistic-regression) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule06_Linear_and_Logistic_Regression_Biomarkers.ipynb#conclusion)
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**Submodule07 Exploratory Proteomic Analysis**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule07_Exploratory_Proteomic_Analysis.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule07_Exploratory_Proteomic_Analysis.ipynb#get-started) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule07_Exploratory_Proteomic_Analysis.ipynb#conclusion)
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**Submodule08 Differential Analysis Proteomics**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule08_Differential_Analysis_Proteomics.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule08_Differential_Analysis_Proteomics.ipynb#get-started) | [Finishing Our Experiment](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule08_Differential_Analysis_Proteomics.ipynb#finishing-our-experiment) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule08_Differential_Analysis_Proteomics.ipynb#conclusion)
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**Submodule09 Biomarker Discovery Using ML**: [Overview](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule09_Biomarker_Discovery_using_ML.ipynb#overview) | [Get Started](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule09_Biomarker_Discovery_using_ML.ipynb#get-started) | [Comparing Our Models](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule09_Biomarker_Discovery_using_ML.ipynb#comparing-our-models-with-metrics) | [Conclusion](https://github.com/NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery/blob/master/GoogleCloud/Submodule09_Biomarker_Discovery_using_ML.ipynb#conclusion)

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