Nachtzuster · alexbelgium · Sep 17, 2024 · Sep 17, 2024 · Sep 17, 2024 · Sep 17, 2024
diff --git a/README.md b/README.md
@@ -1,235 +1,9 @@
-<h1 align="center"><a href="https://github.com/mcguirepr89/BirdNET-Pi/blob/main/LICENSE">Review the license!!</a></h1>
-<h1 align="center">You may not use BirdNET-Pi to develop a commercial product!!!!</h1>
-<h1 align="center">
-  BirdNET-Pi
-</h1>
-<p align="center">
-A realtime acoustic bird classification system for the Raspberry Pi 5, 4B, 400, 3B+, and 0W2
-</p>
-<p align="center">
-  <img src="https://user-images.githubusercontent.com/60325264/140656397-bf76bad4-f110-467c-897d-992ff0f96476.png" />
-</p>
-<p align="center">
-Icon made by <a href="https://www.freepik.com" title="Freepik">Freepik</a> from <a href="https://www.flaticon.com/" title="Flaticon">www.flaticon.com</a>
-</p>
-
-## About this fork:
-I've been building on [mcguirepr89's](https://github.com/mcguirepr89/BirdNET-Pi) most excellent work to further update and improve BirdNET-Pi. Maybe someone will find it useful.
-
-Changes include:
-
- - Web ui is much more responsive
- - Daily charts now include all species, not just top/bottom 10
- - Bump apprise version, so more notification type are possible
- - Swipe events on Daily Charts (by @croisez)
- - Support for 'Species range model V2.4 - V2'
- - Bookworm support
- - Experimental support for writing transient files to tmpfs
- - Rework analysis to consolidate analysis/server/extraction. Should make analysis more robust and slightly more efficient, especially on installations with a large number of recordings
- - Bump tflite_runtime to 2.11.0, it is faster
- - Rework daily_plot.py (chart_viewer) to run as a daemon to avoid the very expensive startup
- - Lots of fixes & cleanups
-
-!! note: see 'Migrating' on how to migrate from mcguirepr89
-
-## Introduction
-BirdNET-Pi is built on the [BirdNET framework](https://github.com/kahst/BirdNET-Analyzer) by [**@kahst**](https://github.com/kahst) <a href="https://creativecommons.org/licenses/by-nc-sa/4.0/"><img src="https://img.shields.io/badge/License-CC%20BY--NC--SA%204.0-lightgrey.svg"></a> using [pre-built TFLite binaries](https://github.com/PINTO0309/TensorflowLite-bin) by [**@PINTO0309**](https://github.com/PINTO0309) . It is able to recognize bird sounds from a USB microphone or sound card in realtime and share its data with the rest of the world.
-
-Check out birds from around the world
-- [BirdWeather](https://app.birdweather.com)<br>
-
-Currently listening in these countries . . . that I know of . . .
-- The United States
-- Germany
-- South Africa
-- France
-- Austria
-- Sweden
-- Scotland
-- Norway
-- England
-- Italy
-- Finland
-- Australia
-- Canada
-- Switzerland
-- Romania
-- Spain
-- New Zealand
-- Russia
-- Croatia
-- Belgium
-- Israel
-- Ireland
-- Denmark
-- Costa Rica
-- The Philippines
-- Hungary
-- South Sudan
-- Argentina
-- Brazil
-- Thailand
-- Colombia
-- Estonia
-- Tasmania
-- Luxembourg
-- Crete
-- Rwanda
-- Oman
-- Belarus
-- Czech Republic
-- Japan
-
-## Features
-* **24/7 recording and automatic identification** of bird songs, chirps, and peeps using BirdNET machine learning
-* **Automatic extraction and cataloguing** of bird clips from full-length recordings
-* **Tools to visualize your recorded bird data** and analyze trends
-* **Live audio stream and spectrogram**
-* **Automatic disk space management** that periodically purges old audio files
-* [BirdWeather](https://app.birdweather.com) integration -- you can request a BirdWeather ID from BirdNET-Pi's "Tools" > "Settings" page
-* Web interface access to all data and logs provided by [Caddy](https://caddyserver.com)
-* [GoTTY](https://github.com/yudai/gotty) and [GoTTY x86](https://github.com/sorenisanerd/gotty) Web Terminal
-* [Tiny File Manager](https://tinyfilemanager.github.io/)
-* FTP server included
-* SQLite3 Database
-* [Adminer](https://www.adminer.org/) database maintenance
-* [phpSysInfo](https://github.com/phpsysinfo/phpsysinfo)
-* [Apprise Notifications](https://github.com/caronc/apprise) supporting 90+ notification platforms
-* Localization supported
-
-## Requirements
-* A Raspberry Pi 5, Raspberry 4B, Raspberry Pi 400, Raspberry Pi 3B+, or Raspberry Pi 0W2 (The 3B+ and 0W2 must run on RaspiOS-ARM64-**Lite**)
-* An SD Card with the **_64-bit version of RaspiOS_** installed (please use Bookworm) -- Lite is recommended, but the installation works on RaspiOS-ARM64-Full as well. Downloads available within the [Raspberry Pi Imager](https://www.raspberrypi.com/software/).
-* A USB Microphone or Sound Card
-
-## Installation
-[A comprehensive installation guide is available here](https://github.com/mcguirepr89/BirdNET-Pi/wiki/Installation-Guide). This guide is slightly out-dated: make sure to pick Bookworm, also the curl command is still pointing to mcguirepr89's repo.
-
-Please note that installing BirdNET-Pi on top of other servers is not supported. If this is something that you require, please open a discussion for your idea and inquire about how to contribute to development.
-
-[Raspberry Pi 3B[+] and 0W2 installation guide available here](https://github.com/mcguirepr89/BirdNET-Pi/wiki/RPi0W2-Installation-Guide)
-
-The system can be installed with:
-```
-curl -s https://raw.githubusercontent.com/Nachtzuster/BirdNET-Pi/main/newinstaller.sh | bash
-```
-The installer takes care of any and all necessary updates, so you can run that as the very first command upon the first boot, if you'd like.
-
-The installation creates a log in `$HOME/installation-$(date "+%F").txt`.
-## Access
-The BirdNET-Pi can be accessed from any web browser on the same network:
-- http://birdnetpi.local OR your Pi's IP address
-- Default Basic Authentication Username: birdnet
-- Password is empty by default. Set this in "Tools" > "Settings" > "Advanced Settings"
-
-Please take a look at the [wiki](https://github.com/mcguirepr89/BirdNET-Pi/wiki) and [discussions](https://github.com/mcguirepr89/BirdNET-Pi/discussions) for information on
-- [BirdNET-Pi's Deep Convolutional Neural Network(s)](https://github.com/mcguirepr89/BirdNET-Pi/wiki/BirdNET-Pi:-some-theory-on-classification-&-some-practical-hints)
-- [making your installation public](https://github.com/mcguirepr89/BirdNET-Pi/wiki/Sharing-Your-BirdNET-Pi)
-- [backing up and restoring your database](https://github.com/mcguirepr89/BirdNET-Pi/wiki/Backup-and-Restore-the-Database)
-- [adjusting your sound card settings](https://github.com/mcguirepr89/BirdNET-Pi/wiki/Adjusting-your-sound-card)
-- [suggested USB microphones](https://github.com/mcguirepr89/BirdNET-Pi/discussions/39)
-- [building your own microphone](https://github.com/DD4WH/SASS/wiki/Stereo--(Mono)-recording-low-noise-low-cost-system)
-- [privacy concerns and options](https://github.com/mcguirepr89/BirdNET-Pi/discussions/166)
-- [beta testing](https://github.com/mcguirepr89/BirdNET-Pi/discussions/11)
-- [and more!](https://github.com/mcguirepr89/BirdNET-Pi/discussions)
-
-
-## Updating 
-
-Use the web interface and go to "Tools" > "System Controls" > "Update." If you encounter any issues with that, or suspect that the update did not work for some reason, please save its output and post it in an issue where we can help.
-
-## Backup and Restore
-
-This script is primary meant for migrating your data for one system to another. Since the time required to create or restore a backup depends on the size of the data set and the speed of the storage, this could take quite a while.
-These examples assume the backup medium is mounted on `/mnt`
-
-To backup:
-```commandline
-./scripts/backup_data.sh -a backup -f /mnt/birds/backup-2024-07-09.tar
-```
-To restore:
-```commandline
-./scripts/backup_data.sh -a restore -f /mnt/birds/backup-2024-07-09.tar
-```
-
-## Uninstallation
-```
-/usr/local/bin/uninstall.sh && cd ~ && rm -drf BirdNET-Pi
-```
-## Migrating
-Before switching, make sure your installation is fully up-to-date. Also make sure to have a backup, that is also the only way to get back to the original BirdNET-Pi.
-Please note that upgrading your underlying OS to Bookworm is not going to work. Please stick to Bullseye. If you do want Bookworm, you need to start from a fresh install and copy back your data. (remember the backup!)
-
-Run these commands to migrate to this repo:
-```
-git remote remove origin
-git remote add origin https://github.com/Nachtzuster/BirdNET-Pi.git
-./scripts/update_birdnet.sh
-```
-## Troubleshooting and Ideas
-*Hint: A lot of weird problems can be solved by simply restarting the core services. Do this from the web interface "Tools" > "Services" > "Restart Core Services"
-Having trouble or have an idea? *Submit an issue for trouble* and a *discussion for ideas*. Please do *not* submit an issue as a discussion -- the issue tracker solicits information that is needed for anyone to help -- discussions are *not for issues*.
-
-PLEASE search the repo for your issue before creating a new one. This repo has nothing to do with the validity of the detection results, so please do not start any issues around "False positives."
-
-## Sharing
-Please join a Discussion!! and please join [BirdWeather!!](https://app.birdweather.com)
-I hope that if you find BirdNET-Pi has been worth your time, you will share your setup, results, customizations, etc. [HERE](https://github.com/mcguirepr89/BirdNET-Pi/discussions/69) and will consider [making your installation public](https://github.com/mcguirepr89/BirdNET-Pi/wiki/Sharing-Your-BirdNET-Pi).
-
-## Homeassistant addon
-
-BirdNET-Pi can also be run as a [Homeassistant](https://www.home-assistant.io/) addon through docker.
-For more information : https://github.com/alexbelgium/hassio-addons/blob/master/birdnet-pi/README.md
-
-## Cool Links
-
-- [Marie Lelouche's <i>Out of Spaces</i>](https://www.lestanneries.fr/exposition/marie-lelouche-out-of-spaces/) using BirdNET-Pi in post-sculpture VR! [Press Kit](https://github.com/mcguirepr89/BirdNET-Pi-assets/blob/main/dp_out_of_spaces_marie_lelouche_digital_05_01_22.pdf)
-- [Research on noded BirdNET-Pi networks for farming](https://github.com/mcguirepr89/BirdNET-Pi-assets/blob/main/G23_Report_ModelBasedSysEngineering_FarmMarkBirdDetector_V1__Copy_.pdf)
-- [PixCams Build Guide](https://pixcams.com/building-a-birdnet-pi-real-time-acoustic-bird-id-station/)
-- <ins>[Core-Electronics](https://core-electronics.com.au/projects/bird-calls-raspberry-pi)</ins> Build Article
-- [RaspberryPi.com Blog Post](https://www.raspberrypi.com/news/classify-birds-acoustically-with-birdnet-pi/)
-- [MagPi Issue 119 Showcase Article](https://magpi.raspberrypi.com/issues/119/pdf)
-
-
-### Internationalization:
-The bird names are in English by default, but other localized versions are available thanks to the wonderful efforts of [@patlevin](https://github.com/patlevin). Use the web interface's "Tools" > "Settings" and select your "Database Language" to have the detections in your language.
-
-Current database languages include the list below:
-| Language | Missing Species out of 6,362 | Missing labels (%) |
-| -------- | ------- | ------ |
-| Afrikaans | 5774 | 90.76% |
-| Catalan | 544 | 8.55% |
-| Chinese | 264 | 4.15% |
-| Croatian | 370 | 5.82% |
-| Czech | 683 | 10.74% |
-| Danish | 460 | 7.23% |
-| Dutch | 264 | 4.15% |
-| Estonian | 3171 | 49.84% |
-| Finnish | 518 | 8.14% |
-| French | 264 | 4.15% |
-| German | 264 | 4.15% |
-| Hungarian | 2688 | 42.25% |
-| Icelandic | 5588 | 87.83% |
-| Indonesian | 5550 | 87.24% |
-| Italian | 524 | 8.24% |
-| Japanese | 640 | 10.06% |
-| Latvian | 4821 | 75.78% |
-| Lithuanian | 597 | 9.38% |
-| Norwegian | 325 | 5.11% |
-| Polish | 265 | 4.17% |
-| Portuguese | 2742 | 43.10% |
-| Russian | 808 | 12.70% |
-| Slovak | 264 | 4.15% |
-| Slovenian | 5532 | 86.95% |
-| Spanish | 348 | 5.47% |
-| Swedish | 264 | 4.15% |
-| Thai | 5580 | 87.71% |
-| Ukrainian | 646 | 10.15% |
-
-## Screenshots
-![Overview](docs/overview.png)
-![chrome_HNMJKSPwV0](https://user-images.githubusercontent.com/103586016/217896322-aee3ecc4-e40e-40df-ade1-79f05ded21f2.png)
-
-
-## :thinking:
-Are you a lucky ducky with a spare Raspberry Pi? [Try Folding@home!](https://foldingathome.org/)
+Additional PR vs Nachtzuster, used for HA addon
+- New graph : https://github.com/alexbelgium/BirdNET-Pi/tree/new_daily_graph
+- Confirmed species : https://github.com/alexbelgium/BirdNET-Pi/tree/confirmed_species_feature
+- SNR : https://github.com/alexbelgium/BirdNET-Pi/tree/SNR
+- New species on top : https://github.com/alexbelgium/BirdNET-Pi/tree/new_species
+
+To do :
+- observation.org upload
+- High/low pass
diff --git a/homepage/images/check.svg b/homepage/images/check.svg
diff --git a/homepage/images/question.svg b/homepage/images/question.svg
diff --git a/newinstaller.sh b/newinstaller.sh
@@ -45,7 +45,7 @@ if [[ ! -z $PACKAGES_MISSING ]] ; then
 fi
 
 branch=main
-git clone -b $branch --depth=1 https://github.com/Nachtzuster/BirdNET-Pi.git ${HOME}/BirdNET-Pi &&
+git clone -b $branch --depth=1 https://github.com/alexbelgium/BirdNET-Pi.git ${HOME}/BirdNET-Pi &&
 
 $HOME/BirdNET-Pi/scripts/install_birdnet.sh
 if [ ${PIPESTATUS[0]} -eq 0 ];then

diff --git a/scripts/advanced.php b/scripts/advanced.php
@@ -196,6 +196,15 @@
     $contents = preg_replace("/RAW_SPECTROGRAM=.*/", "RAW_SPECTROGRAM=0", $contents);
   }
 
+  if(isset($_GET["confirm_species"])) {
+    $confirm_species = 1;
+    if(strcmp($CONFIRM_SPECIES,$config['CONFIRM_SPECIES']) !== 0) {
+      $contents = preg_replace("/CONFIRM_SPECIES=.*/", "CONFIRM_SPECIES=$confirm_species", $contents);
+    }
+  } else {
+    $contents = preg_replace("/CONFIRM_SPECIES=.*/", "CONFIRM_SPECIES=0", $contents);
+  }
+
   if(isset($_GET["custom_image"])) {
     $custom_image = $_GET["custom_image"];
     if(strcmp($custom_image,$config['CUSTOM_IMAGE']) !== 0) {
@@ -428,12 +437,19 @@ function collectrtspUrls() {
       <table class="settingstable"><tr><td>
       <h2>Options</h2>
       <label for="silence_update_indicator">Silence Update Indicator: </label>
-      <input type="checkbox" name="silence_update_indicator" <?php if($newconfig['SILENCE_UPDATE_INDICATOR'] == 1) { echo "checked"; };?> ><br>
-      <p>This allows you to quiet the display of how many commits your installation is behind by relative to the Github repo. This number appears next to "Tools" when you're 50 or more commits behind.</p>
+      <input type="checkbox" name="silence_update_indicator" <?php if($newconfig['SILENCE_UPDATE_INDICATOR'] == 1) { echo "checked"; };?> >
+      <p>This allows you to quiet the display of how many commits your installation is behind by relative to the Github repo. This number appears next to "Tools" when you're 50 or more commits behind.</p><br>
 
       <label for="raw_spectrogram">Minimalist Spectrograms: </label>
-      <input type="checkbox" name="raw_spectrogram" <?php if($newconfig['RAW_SPECTROGRAM'] == 1) { echo "checked"; };?> ><br>
-      <p>This allows you to remove the axes and labels of the spectrograms that are generated by Sox for each detection for a cleaner appearance.</p>
+      <input type="checkbox" name="raw_spectrogram" <?php if($newconfig['RAW_SPECTROGRAM'] == 1) { echo "checked"; };?> >
+      <p>This allows you to remove the axes and labels of the spectrograms that are generated by Sox for each detection for a cleaner appearance.</p><br>
+      </td></tr></table><br>
+
+      <table class="settingstable"><tr><td>
+      <h2>Option : Confirmed Species</h2>
+      <label for="confirm_species">Confirmation of species: </label>
+      <input type="checkbox" name="confirm_species" <?php if($newconfig['CONFIRM_SPECIES'] == 1) { echo "checked"; };?> >
+      <p>This allows to visually mark species that were manually confirmed as existing in the area. A new question mark appears next to species names in the Recordings page. Clicking it changes the icon to a checkmark, and add the species to the file confirmed_species_list.txt</p>
       </td></tr></table><br>
 
       <table class="settingstable"><tr><td>

diff --git a/scripts/clear_all_data.sh b/scripts/clear_all_data.sh
@@ -25,6 +25,7 @@ echo "Re-creating necessary directories"
 sudo -u ${USER} ln -fs $(dirname $my_dir)/exclude_species_list.txt $my_dir
 sudo -u ${USER} ln -fs $(dirname $my_dir)/include_species_list.txt $my_dir
 sudo -u ${USER} ln -fs $(dirname $my_dir)/whitelist_species_list.txt $my_dir
+sudo -u ${USER} ln -fs $(dirname $my_dir)/confirmed_species_list.txt $my_dir
 sudo -u ${USER} ln -fs $(dirname $my_dir)/homepage/* ${EXTRACTED}
 sudo -u ${USER} ln -fs $(dirname $my_dir)/model/labels.txt ${my_dir}
 sudo -u ${USER} ln -fs $my_dir ${EXTRACTED}