diff --git a/articles/PoS_codata.html b/articles/PoS_codata.html index fd95f2e..d182e2c 100644 --- a/articles/PoS_codata.html +++ b/articles/PoS_codata.html @@ -69,7 +69,7 @@

Sebastian

2024-11-21

- Source: vignettes/articles/PoS_codata.Rmd + Source: vignettes/articles/PoS_codata.Rmd
PoS_codata.Rmd
diff --git a/articles/PoS_interim.html b/articles/PoS_interim.html index 97c204c..6d11bea 100644 --- a/articles/PoS_interim.html +++ b/articles/PoS_interim.html @@ -66,7 +66,7 @@

Yue Li

2024-11-21

- Source: vignettes/articles/PoS_interim.Rmd + Source: vignettes/articles/PoS_interim.Rmd
PoS_interim.Rmd
diff --git a/articles/customizing_plots.html b/articles/customizing_plots.html index 9b50843..fddc9af 100644 --- a/articles/customizing_plots.html +++ b/articles/customizing_plots.html @@ -67,7 +67,7 @@

Baldur

2024-11-21

- Source: vignettes/articles/customizing_plots.Rmd + Source: vignettes/articles/customizing_plots.Rmd
customizing_plots.Rmd
diff --git a/articles/introduction.html b/articles/introduction.html index 1061b4e..f92337c 100644 --- a/articles/introduction.html +++ b/articles/introduction.html @@ -67,7 +67,7 @@

Sebastian

2024-11-21

- Source: vignettes/introduction.Rmd + Source: vignettes/introduction.Rmd
introduction.Rmd
diff --git a/articles/introduction_normal.html b/articles/introduction_normal.html index f20bf8a..8e1992d 100644 --- a/articles/introduction_normal.html +++ b/articles/introduction_normal.html @@ -66,7 +66,7 @@

Yue Li

2024-11-21

- Source: vignettes/articles/introduction_normal.Rmd + Source: vignettes/articles/introduction_normal.Rmd
introduction_normal.Rmd
diff --git a/articles/variances_MAP.html b/articles/variances_MAP.html index 50061fc..eaa9776 100644 --- a/articles/variances_MAP.html +++ b/articles/variances_MAP.html @@ -67,7 +67,7 @@

Sebastian

2024-11-21

- Source: vignettes/articles/variances_MAP.Rmd + Source: vignettes/articles/variances_MAP.Rmd
variances_MAP.Rmd
diff --git a/authors.html b/authors.html index 3478480..f6e5608 100644 --- a/authors.html +++ b/authors.html @@ -79,7 +79,7 @@

Authors

Citation

-

Source: inst/CITATION

+

Source: inst/CITATION

Weber S, Li Y, Seaman JW, Kakizume T, Schmidli H (2021). “Applying Meta-Analytic-Predictive Priors with the R Bayesian Evidence Synthesis Tools.” diff --git a/news/index.html b/news/index.html index 21987bc..821ff54 100644 --- a/news/index.html +++ b/news/index.html @@ -38,7 +38,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index ad9c50b..0b02e3b 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -8,7 +8,7 @@ articles: articles/PoS_codata: PoS_codata.html articles/PoS_interim: PoS_interim.html articles/variances_MAP: variances_MAP.html -last_built: 2024-11-21T13:43Z +last_built: 2024-11-21T14:36Z urls: reference: https://opensource.nibr.com/RBesT/reference article: https://opensource.nibr.com/RBesT/articles diff --git a/reference/AS.html b/reference/AS.html index 35ab2fd..7f00bf6 100644 --- a/reference/AS.html +++ b/reference/AS.html @@ -46,7 +46,7 @@

Ankylosing Spondylitis.

- Source: R/AS.R + Source: R/AS.R
AS.Rd
diff --git a/reference/BinaryExactCI.html b/reference/BinaryExactCI.html index 83cf9d4..f2d9d01 100644 --- a/reference/BinaryExactCI.html +++ b/reference/BinaryExactCI.html @@ -40,7 +40,7 @@

Exact Confidence interval for Binary Proportion

- Source: R/BinaryExactCI.R + Source: R/BinaryExactCI.R
BinaryExactCI.Rd
diff --git a/reference/Curry.html b/reference/Curry.html index a8e2ae7..ce43f35 100644 --- a/reference/Curry.html +++ b/reference/Curry.html @@ -38,7 +38,7 @@

Functional programming utilities

- Source: R/Curry.R + Source: R/Curry.R
Curry.Rd
diff --git a/reference/RBesT-package.html b/reference/RBesT-package.html index 0cb104f..20dd0a1 100644 --- a/reference/RBesT-package.html +++ b/reference/RBesT-package.html @@ -44,7 +44,7 @@

R Bayesian Evidence Synthesis Tools

- Source: R/RBesT-package.R + Source: R/RBesT-package.R
RBesT-package.Rd
diff --git a/reference/SimSum.html b/reference/SimSum.html index 8fc9afe..36d2180 100644 --- a/reference/SimSum.html +++ b/reference/SimSum.html @@ -38,7 +38,7 @@

Summarize Arrays

- Source: R/SimSum.R + Source: R/SimSum.R
SimSum.Rd
diff --git a/reference/automixfit.html b/reference/automixfit.html index bdd3fb1..8772181 100644 --- a/reference/automixfit.html +++ b/reference/automixfit.html @@ -48,7 +48,7 @@

Automatic Fitting of Mixtures of Conjugate Distributions to a Sample

- Source: R/automixfit.R + Source: R/automixfit.R
automixfit.Rd
diff --git a/reference/chains2sample.html b/reference/chains2sample.html index 1afd23a..958ea8c 100644 --- a/reference/chains2sample.html +++ b/reference/chains2sample.html @@ -42,7 +42,7 @@

Scrambles the order of a mcmc array object for usage as a mcmc sample. It is advisable to set order once per mcmc run, otherwise correlations in the mcmc sample will be lost.

- Source: R/chains2sample.R + Source: R/chains2sample.R
chains2sample.Rd
diff --git a/reference/colVars.html b/reference/colVars.html index 6205555..d1c59fe 100644 --- a/reference/colVars.html +++ b/reference/colVars.html @@ -38,7 +38,7 @@

Fast column-wise calculation of unbiased variances

- Source: R/colVars.R + Source: R/colVars.R
colVars.Rd
diff --git a/reference/colitis.html b/reference/colitis.html index a55b4d1..01f352a 100644 --- a/reference/colitis.html +++ b/reference/colitis.html @@ -42,7 +42,7 @@

Ulcerative Colitis.

- Source: R/colitis.R + Source: R/colitis.R
colitis.Rd
diff --git a/reference/crohn.html b/reference/crohn.html index 3fdf812..550b273 100644 --- a/reference/crohn.html +++ b/reference/crohn.html @@ -46,7 +46,7 @@

Crohn's disease.

- Source: R/crohn.R + Source: R/crohn.R
crohn.Rd
diff --git a/reference/dBetaBinomial.html b/reference/dBetaBinomial.html index d38b55a..7f3cc4c 100644 --- a/reference/dBetaBinomial.html +++ b/reference/dBetaBinomial.html @@ -38,7 +38,7 @@

Beta-Binomial Probabilities

- Source: R/dBetaBinomial.R + Source: R/dBetaBinomial.R
dBetaBinomial.Rd
diff --git a/reference/decision1S.html b/reference/decision1S.html index 8596f17..9ba4e3c 100644 --- a/reference/decision1S.html +++ b/reference/decision1S.html @@ -40,7 +40,7 @@

Decision Function for 1 Sample Designs

- Source: R/decision1S.R + Source: R/decision1S.R
decision1S.Rd
diff --git a/reference/decision1S_boundary.html b/reference/decision1S_boundary.html index 1b75dc7..c35b701 100644 --- a/reference/decision1S_boundary.html +++ b/reference/decision1S_boundary.html @@ -42,7 +42,7 @@

Decision Boundary for 1 Sample Designs

- Source: R/decision1S_boundary.R + Source: R/decision1S_boundary.R
decision1S_boundary.Rd
diff --git a/reference/decision2S.html b/reference/decision2S.html index 456d886..fdb2649 100644 --- a/reference/decision2S.html +++ b/reference/decision2S.html @@ -40,7 +40,7 @@

Decision Function for 2 Sample Designs

- Source: R/decision2S.R + Source: R/decision2S.R
decision2S.Rd
diff --git a/reference/decision2S_boundary.html b/reference/decision2S_boundary.html index 8353353..288e2cc 100644 --- a/reference/decision2S_boundary.html +++ b/reference/decision2S_boundary.html @@ -50,7 +50,7 @@

Decision Boundary for 2 Sample Designs

- Source: R/decision2S_boundary.R + Source: R/decision2S_boundary.R
decision2S_boundary.Rd
diff --git a/reference/dlink-set.html b/reference/dlink-set.html index ef7ce5a..4c38faa 100644 --- a/reference/dlink-set.html +++ b/reference/dlink-set.html @@ -38,7 +38,7 @@

Transform Densities with a link function

- Source: R/dlink.R + Source: R/dlink.R
dlink-set.Rd
diff --git a/reference/ess.html b/reference/ess.html index 3595719..37b745d 100644 --- a/reference/ess.html +++ b/reference/ess.html @@ -42,7 +42,7 @@

Effective Sample Size for a Conjugate Prior

- Source: R/mixess.R + Source: R/mixess.R
ess.Rd
diff --git a/reference/fill.html b/reference/fill.html index 8438b0e..44ee39c 100644 --- a/reference/fill.html +++ b/reference/fill.html @@ -40,7 +40,7 @@

Fill numeric objects

- Source: R/dlink.R + Source: R/dlink.R
fill.Rd
diff --git a/reference/forest_plot.html b/reference/forest_plot.html index ab1afae..a3af001 100644 --- a/reference/forest_plot.html +++ b/reference/forest_plot.html @@ -38,7 +38,7 @@

Forest Plot

- Source: R/forest_plot.R + Source: R/forest_plot.R
forest_plot.Rd
diff --git a/reference/gMAP.html b/reference/gMAP.html index 77c4b70..162351b 100644 --- a/reference/gMAP.html +++ b/reference/gMAP.html @@ -44,7 +44,7 @@

Meta-Analytic-Predictive Analysis for Generalized Linear Models

- Source: R/gMAP.R + Source: R/gMAP.R
gMAP.Rd
diff --git a/reference/integrate_density_log.html b/reference/integrate_density_log.html index 06779e7..0e62f63 100644 --- a/reference/integrate_density_log.html +++ b/reference/integrate_density_log.html @@ -44,7 +44,7 @@

internal function used for integration of densities which appears to be much more stable from -Inf to +Inf in the logit space while the density to be integrated recieves inputs from 0 to 1 such that the inverse distribution function must be used. The integral solved is int_x dmix(mix,x) integrand(x) where integrand must be given as log and we integrate over the support of mix.

- Source: R/integrate_logit_log.R + Source: R/integrate_logit_log.R
integrate_density_log.Rd
diff --git a/reference/knn.html b/reference/knn.html index dec2faa..cb1d6ed 100644 --- a/reference/knn.html +++ b/reference/knn.html @@ -38,7 +38,7 @@

k nearest neighbor algorithm for multi-variate data

- Source: R/knn.R + Source: R/knn.R
knn.Rd
diff --git a/reference/likelihood.html b/reference/likelihood.html index 833092b..00e4a46 100644 --- a/reference/likelihood.html +++ b/reference/likelihood.html @@ -38,7 +38,7 @@

Read and Set Likelihood to the Corresponding Conjugate Prior

- Source: R/likelihood.R + Source: R/likelihood.R
likelihood.Rd
diff --git a/reference/lodds.html b/reference/lodds.html index dbd7f74..18515d2 100644 --- a/reference/lodds.html +++ b/reference/lodds.html @@ -38,7 +38,7 @@

Logit (log-odds) and inverse-logit function.

- Source: R/lodds.R + Source: R/lodds.R
lodds.Rd
diff --git a/reference/logLik.EM.html b/reference/logLik.EM.html index 09760eb..3ed2030 100644 --- a/reference/logLik.EM.html +++ b/reference/logLik.EM.html @@ -38,7 +38,7 @@

Extract log likelihood from fitted EM objects

- Source: R/EM_logLik.R + Source: R/EM_logLik.R
logLik.EM.Rd
diff --git a/reference/log_inv_logit.html b/reference/log_inv_logit.html index 8b943bd..e326f40 100644 --- a/reference/log_inv_logit.html +++ b/reference/log_inv_logit.html @@ -38,7 +38,7 @@

Numerically stable log of the inv_logit function

- Source: R/log_inv_logit.R + Source: R/log_inv_logit.R
log_inv_logit.Rd
diff --git a/reference/mix.html b/reference/mix.html index 5acbdc4..a37c979 100644 --- a/reference/mix.html +++ b/reference/mix.html @@ -44,7 +44,7 @@

Mixture Distributions

- Source: R/mix.R + Source: R/mix.R
mix.Rd
diff --git a/reference/mixbeta.html b/reference/mixbeta.html index 9bbd149..76b0b0f 100644 --- a/reference/mixbeta.html +++ b/reference/mixbeta.html @@ -38,7 +38,7 @@

Beta Mixture Density

- Source: R/mixbeta.R + Source: R/mixbeta.R
mixbeta.Rd
diff --git a/reference/mixcombine.html b/reference/mixcombine.html index f7b3cb7..fc11797 100644 --- a/reference/mixcombine.html +++ b/reference/mixcombine.html @@ -38,7 +38,7 @@

Combine Mixture Distributions

- Source: R/mixcombine.R + Source: R/mixcombine.R
mixcombine.Rd
diff --git a/reference/mixdiff.html b/reference/mixdiff.html index 5ca7289..ea7889c 100644 --- a/reference/mixdiff.html +++ b/reference/mixdiff.html @@ -42,7 +42,7 @@

Difference of mixture distributions

- Source: R/mixdiff.R + Source: R/mixdiff.R
mixdiff.Rd
diff --git a/reference/mixdist3.html b/reference/mixdist3.html index fbd43f3..effa05f 100644 --- a/reference/mixdist3.html +++ b/reference/mixdist3.html @@ -38,7 +38,7 @@

Utility function to instantiate 2 parameter mixture densities.

- Source: R/mixdist3.R + Source: R/mixdist3.R
mixdist3.Rd
diff --git a/reference/mixfit.html b/reference/mixfit.html index 175129c..5396270 100644 --- a/reference/mixfit.html +++ b/reference/mixfit.html @@ -42,7 +42,7 @@

Fit of Mixture Densities to Samples

- Source: R/mixfit.R + Source: R/mixfit.R
mixfit.Rd
diff --git a/reference/mixgamma.html b/reference/mixgamma.html index 9564e8a..e17bd13 100644 --- a/reference/mixgamma.html +++ b/reference/mixgamma.html @@ -38,7 +38,7 @@

The Gamma Mixture Distribution

- Source: R/mixgamma.R + Source: R/mixgamma.R
mixgamma.Rd
diff --git a/reference/mixlink.html b/reference/mixlink.html index f414807..bf3c12a 100644 --- a/reference/mixlink.html +++ b/reference/mixlink.html @@ -40,7 +40,7 @@

takes x and transforms it according to the defined link function of the mixture

- Source: R/mix.R + Source: R/mix.R
mixlink.Rd
diff --git a/reference/mixmvnorm.html b/reference/mixmvnorm.html index e03763f..19750ba 100644 --- a/reference/mixmvnorm.html +++ b/reference/mixmvnorm.html @@ -40,7 +40,7 @@

Multivariate Normal Mixture Density

- Source: R/mixmvnorm.R + Source: R/mixmvnorm.R
mixmvnorm.Rd
diff --git a/reference/mixnorm.html b/reference/mixnorm.html index 83720c7..37efceb 100644 --- a/reference/mixnorm.html +++ b/reference/mixnorm.html @@ -38,7 +38,7 @@

Normal Mixture Density

- Source: R/mixnorm.R + Source: R/mixnorm.R
mixnorm.Rd
diff --git a/reference/mixplot.html b/reference/mixplot.html index 254b1bd..fff62b3 100644 --- a/reference/mixplot.html +++ b/reference/mixplot.html @@ -38,7 +38,7 @@

Plot mixture distributions

- Source: R/mixplot.R + Source: R/mixplot.R
mixplot.Rd
diff --git a/reference/mixstanvar.html b/reference/mixstanvar.html index 216b520..f31b0b4 100644 --- a/reference/mixstanvar.html +++ b/reference/mixstanvar.html @@ -42,7 +42,7 @@

Mixture distributions as brms priors

- Source: R/mixstanvar.R + Source: R/mixstanvar.R
mixstanvar.Rd
diff --git a/reference/oc1S.html b/reference/oc1S.html index 7af5574..36d804d 100644 --- a/reference/oc1S.html +++ b/reference/oc1S.html @@ -46,7 +46,7 @@

Operating Characteristics for 1 Sample Design

- Source: R/oc1S.R + Source: R/oc1S.R
oc1S.Rd
diff --git a/reference/oc2S.html b/reference/oc2S.html index b0d072f..8094041 100644 --- a/reference/oc2S.html +++ b/reference/oc2S.html @@ -46,7 +46,7 @@

Operating Characteristics for 2 Sample Design

- Source: R/oc2S.R + Source: R/oc2S.R
oc2S.Rd
diff --git a/reference/plot.EM.html b/reference/plot.EM.html index e3c55b4..789cd84 100644 --- a/reference/plot.EM.html +++ b/reference/plot.EM.html @@ -38,7 +38,7 @@

Diagnostic plots for EM fits

- Source: R/EM_plot.R + Source: R/EM_plot.R
plot.EM.Rd
diff --git a/reference/plot.gMAP.html b/reference/plot.gMAP.html index 285268d..42645eb 100644 --- a/reference/plot.gMAP.html +++ b/reference/plot.gMAP.html @@ -38,7 +38,7 @@

Diagnostic plots for gMAP analyses

- Source: R/plot_gMAP.R + Source: R/plot_gMAP.R
plot.gMAP.Rd
diff --git a/reference/pos1S.html b/reference/pos1S.html index 09e99fc..fa72be4 100644 --- a/reference/pos1S.html +++ b/reference/pos1S.html @@ -46,7 +46,7 @@

Probability of Success for a 1 Sample Design

- Source: R/pos1S.R + Source: R/pos1S.R
pos1S.Rd
diff --git a/reference/pos2S.html b/reference/pos2S.html index 610fc2f..8e52f99 100644 --- a/reference/pos2S.html +++ b/reference/pos2S.html @@ -46,7 +46,7 @@

Probability of Success for 2 Sample Design

- Source: R/pos2S.R + Source: R/pos2S.R
pos2S.Rd
diff --git a/reference/postmix.html b/reference/postmix.html index ea7ce53..31274ae 100644 --- a/reference/postmix.html +++ b/reference/postmix.html @@ -42,7 +42,7 @@

Conjugate Posterior Analysis

- Source: R/postmix.R + Source: R/postmix.R
postmix.Rd
diff --git a/reference/preddist.html b/reference/preddist.html index 2eec067..628bd16 100644 --- a/reference/preddist.html +++ b/reference/preddist.html @@ -40,7 +40,7 @@

Predictive Distributions for Mixture Distributions

- Source: R/preddist.R + Source: R/preddist.R
preddist.Rd
diff --git a/reference/predict.gMAP.html b/reference/predict.gMAP.html index 587ab44..ad36014 100644 --- a/reference/predict.gMAP.html +++ b/reference/predict.gMAP.html @@ -38,7 +38,7 @@

Predictions from gMAP analyses

- Source: R/predict_gMAP.R + Source: R/predict_gMAP.R
predict.gMAP.Rd
diff --git a/reference/robustify.html b/reference/robustify.html index 17d882b..98759a4 100644 --- a/reference/robustify.html +++ b/reference/robustify.html @@ -38,7 +38,7 @@

Robustify Mixture Priors

- Source: R/robustify.R + Source: R/robustify.R
robustify.Rd
diff --git a/reference/support.html b/reference/support.html index 72cdf44..7065a1e 100644 --- a/reference/support.html +++ b/reference/support.html @@ -38,7 +38,7 @@

Support of Distributions

- Source: R/support.R + Source: R/support.R
support.Rd
diff --git a/reference/transplant.html b/reference/transplant.html index 92868a5..eaef197 100644 --- a/reference/transplant.html +++ b/reference/transplant.html @@ -42,7 +42,7 @@

Transplant.

- Source: R/transplant.R + Source: R/transplant.R
transplant.Rd
diff --git a/reference/uniroot_int.html b/reference/uniroot_int.html index 9ef7b6c..5876e61 100644 --- a/reference/uniroot_int.html +++ b/reference/uniroot_int.html @@ -40,7 +40,7 @@

Find root of univariate function of integers

- Source: R/uniroot_int.R + Source: R/uniroot_int.R
uniroot_int.Rd