regenerate doc

Novartis · Nov 21, 2024 · 6d7eb25 · 6d7eb25
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -9,7 +9,7 @@ Description: Tool-set to support Bayesian evidence synthesis.  This
     <doi:10.1177/1740774509356002> and Schmidli et al. (2014)
     <doi:10.1111/biom.12242> explain details on the methodology.
 Version: 1.7-4
-Date: 2024-11-20
+Date: 2024-11-21
 Authors@R: c(person("Novartis", "Pharma AG", role = "cph")
             ,person("Sebastian", "Weber", email="sebastian.weber@novartis.com", role=c("aut", "cre"))
             ,person("Beat", "Neuenschwander", email="beat.neuenschwander@novartis.com", role="ctb")

diff --git a/NAMESPACE b/NAMESPACE
@@ -76,6 +76,7 @@ S3method(print,betaBinomialMix)
 S3method(print,betaMix)
 S3method(print,decision1S)
 S3method(print,decision2S)
+S3method(print,dlink)
 S3method(print,gMAP)
 S3method(print,gMAPpred)
 S3method(print,gMAPsummary)

diff --git a/NEWS.md b/NEWS.md
@@ -1,4 +1,4 @@
-# RBesT 1.7-4 - November 20th, 2024
+# RBesT 1.7-4 - November 21st, 2024
 
 ## Enhancements
 
@@ -7,7 +7,7 @@
 * Slight speed increase for Stan model by more efficient construction
   of likelihood. Also reducing object size of `gMAP` objects by
   avoiding to store redundant variables.
-* Upgraded testhat edition to version 3.
+* Upgraded `testthat` edition to version 3.
 
 ## Bugfixes
 

diff --git a/R/RBesT-package.R b/R/RBesT-package.R
@@ -38,6 +38,7 @@
 #' \tab \code{rel.tol=.Machine$double.eps^0.25,} \tab \cr
 #' \tab \code{abs.tol=.Machine$double.eps^0.25,} \tab \cr
 #' \tab \code{subdivisions=1E3)} \tab \cr
+#' \code{RBesT.integrate_prob_eps} \tab \code{1E-6} \tab probability mass left out from tails if integration needs to be restricted in range \cr
 #' }
 #'
 #' @section Version History:

diff --git a/R/sysdata.rda b/R/sysdata.rda
diff --git a/data/AS.rda b/data/AS.rda
diff --git a/data/colitis.rda b/data/colitis.rda
diff --git a/data/crohn.rda b/data/crohn.rda
diff --git a/data/transplant.rda b/data/transplant.rda
diff --git a/man/RBesT-package.Rd b/man/RBesT-package.Rd
diff --git a/man/ess.Rd b/man/ess.Rd
diff --git a/man/integrate_density_log.Rd b/man/integrate_density_log.Rd
diff --git a/man/mixbeta.Rd b/man/mixbeta.Rd
diff --git a/man/mixcombine.Rd b/man/mixcombine.Rd
diff --git a/man/mixgamma.Rd b/man/mixgamma.Rd
diff --git a/man/mixmvnorm.Rd b/man/mixmvnorm.Rd
diff --git a/man/mixnorm.Rd b/man/mixnorm.Rd
diff --git a/man/mixplot.Rd b/man/mixplot.Rd
diff --git a/man/oc1S.Rd b/man/oc1S.Rd
diff --git a/man/oc2S.Rd b/man/oc2S.Rd
diff --git a/man/plot.gMAP.Rd b/man/plot.gMAP.Rd
diff --git a/man/pos1S.Rd b/man/pos1S.Rd
diff --git a/man/pos2S.Rd b/man/pos2S.Rd
diff --git a/man/predict.gMAP.Rd b/man/predict.gMAP.Rd
diff --git a/tools/make-ds.R b/tools/make-ds.R
@@ -43,7 +43,7 @@ make_internal_ds <- function() {
     calibration_meta["MD5"]  <- vals["MD5"]
 
     pkg_create_date  <- Sys.time()
-    pkg_sha <- "a0c573a"
+    pkg_sha <- "ff4fcab"
 
     if (gsub("\\$", "", pkg_sha) == "Format:%h") {
         pkg_sha <- system("git rev-parse --short HEAD", intern=TRUE)