From ead9058b766578de5de4f9728dbd380f3222cb06 Mon Sep 17 00:00:00 2001 From: weberse2 Date: Wed, 8 Jan 2025 12:59:55 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20Novartis?= =?UTF-8?q?/RBesT@4be5c2604216a9c8c0fc6b4bad7eee6979bb521a=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/PoS_codata.html | 2 +- articles/PoS_interim.html | 2 +- articles/customizing_plots.html | 2 +- articles/introduction.html | 2 +- articles/introduction_normal.html | 2 +- articles/variances_MAP.html | 2 +- authors.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/AS.html | 2 +- reference/BinaryExactCI.html | 2 +- reference/Curry.html | 2 +- reference/RBesT-package.html | 2 +- reference/SimSum.html | 2 +- reference/automixfit.html | 2 +- reference/chains2sample.html | 2 +- reference/colVars.html | 2 +- reference/colitis.html | 2 +- reference/crohn.html | 2 +- reference/dBetaBinomial.html | 2 +- reference/decision1S.html | 2 +- reference/decision1S_boundary.html | 2 +- reference/decision2S.html | 2 +- reference/decision2S_boundary.html | 2 +- reference/dlink-set.html | 2 +- reference/ess.html | 2 +- reference/fill.html | 2 +- reference/forest_plot.html | 2 +- reference/gMAP.html | 2 +- reference/integrate_density_log.html | 2 +- reference/knn.html | 2 +- reference/likelihood.html | 2 +- reference/lodds.html | 2 +- reference/logLik.EM.html | 2 +- reference/log_inv_logit.html | 2 +- reference/mix.html | 2 +- reference/mixbeta.html | 2 +- reference/mixcombine.html | 2 +- reference/mixdiff.html | 2 +- reference/mixdist3.html | 2 +- reference/mixfit.html | 2 +- reference/mixgamma.html | 2 +- reference/mixlink.html | 2 +- reference/mixmvnorm.html | 2 +- reference/mixnorm.html | 2 +- reference/mixplot.html | 2 +- reference/mixstanvar.html | 2 +- reference/oc1S.html | 2 +- reference/oc2S.html | 2 +- reference/plot.EM.html | 2 +- reference/plot.gMAP.html | 2 +- reference/pos1S.html | 2 +- reference/pos2S.html | 2 +- reference/postmix.html | 2 +- reference/preddist.html | 2 +- reference/predict.gMAP.html | 2 +- reference/robustify.html | 2 +- reference/support.html | 2 +- reference/transplant.html | 2 +- reference/uniroot_int.html | 2 +- 60 files changed, 60 insertions(+), 60 deletions(-) diff --git a/articles/PoS_codata.html b/articles/PoS_codata.html index 69c7aab..cb56c47 100644 --- a/articles/PoS_codata.html +++ b/articles/PoS_codata.html @@ -69,7 +69,7 @@

Sebastian

2025-01-08

- Source: vignettes/articles/PoS_codata.Rmd + Source: vignettes/articles/PoS_codata.Rmd
PoS_codata.Rmd
diff --git a/articles/PoS_interim.html b/articles/PoS_interim.html index d1cde4e..323479f 100644 --- a/articles/PoS_interim.html +++ b/articles/PoS_interim.html @@ -66,7 +66,7 @@

Yue Li

2025-01-08

- Source: vignettes/articles/PoS_interim.Rmd + Source: vignettes/articles/PoS_interim.Rmd
PoS_interim.Rmd
diff --git a/articles/customizing_plots.html b/articles/customizing_plots.html index 840a15e..20bffc8 100644 --- a/articles/customizing_plots.html +++ b/articles/customizing_plots.html @@ -67,7 +67,7 @@

Baldur

2025-01-08

- Source: vignettes/articles/customizing_plots.Rmd + Source: vignettes/articles/customizing_plots.Rmd
customizing_plots.Rmd
diff --git a/articles/introduction.html b/articles/introduction.html index f2d5d95..e1197da 100644 --- a/articles/introduction.html +++ b/articles/introduction.html @@ -67,7 +67,7 @@

Sebastian

2025-01-08

- Source: vignettes/introduction.Rmd + Source: vignettes/introduction.Rmd
introduction.Rmd
diff --git a/articles/introduction_normal.html b/articles/introduction_normal.html index 2f0efea..a5110c8 100644 --- a/articles/introduction_normal.html +++ b/articles/introduction_normal.html @@ -66,7 +66,7 @@

Yue Li

2025-01-08

- Source: vignettes/articles/introduction_normal.Rmd + Source: vignettes/articles/introduction_normal.Rmd
introduction_normal.Rmd
diff --git a/articles/variances_MAP.html b/articles/variances_MAP.html index 543d051..d8dc68c 100644 --- a/articles/variances_MAP.html +++ b/articles/variances_MAP.html @@ -67,7 +67,7 @@

Sebastian

2025-01-08

- Source: vignettes/articles/variances_MAP.Rmd + Source: vignettes/articles/variances_MAP.Rmd
variances_MAP.Rmd
diff --git a/authors.html b/authors.html index 3527fff..6eb4734 100644 --- a/authors.html +++ b/authors.html @@ -79,7 +79,7 @@

Authors

Citation

-

Source: inst/CITATION

+

Source: inst/CITATION

Weber S, Li Y, Seaman JW, Kakizume T, Schmidli H (2021). “Applying Meta-Analytic-Predictive Priors with the R Bayesian Evidence Synthesis Tools.” diff --git a/news/index.html b/news/index.html index c291885..fcde2ca 100644 --- a/news/index.html +++ b/news/index.html @@ -38,7 +38,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index 07e6dd9..c1cd378 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -8,7 +8,7 @@ articles: articles/PoS_codata: PoS_codata.html articles/PoS_interim: PoS_interim.html articles/variances_MAP: variances_MAP.html -last_built: 2025-01-08T12:29Z +last_built: 2025-01-08T12:57Z urls: reference: https://opensource.nibr.com/RBesT/reference article: https://opensource.nibr.com/RBesT/articles diff --git a/reference/AS.html b/reference/AS.html index 54846ee..db4ca8c 100644 --- a/reference/AS.html +++ b/reference/AS.html @@ -46,7 +46,7 @@

Ankylosing Spondylitis.

- Source: R/AS.R + Source: R/AS.R
AS.Rd
diff --git a/reference/BinaryExactCI.html b/reference/BinaryExactCI.html index 0b4300c..8329eda 100644 --- a/reference/BinaryExactCI.html +++ b/reference/BinaryExactCI.html @@ -40,7 +40,7 @@

Exact Confidence interval for Binary Proportion

- Source: R/BinaryExactCI.R + Source: R/BinaryExactCI.R
BinaryExactCI.Rd
diff --git a/reference/Curry.html b/reference/Curry.html index 0dae683..8e2af1d 100644 --- a/reference/Curry.html +++ b/reference/Curry.html @@ -38,7 +38,7 @@

Functional programming utilities

- Source: R/Curry.R + Source: R/Curry.R
Curry.Rd
diff --git a/reference/RBesT-package.html b/reference/RBesT-package.html index 8a4c585..0c91350 100644 --- a/reference/RBesT-package.html +++ b/reference/RBesT-package.html @@ -44,7 +44,7 @@

R Bayesian Evidence Synthesis Tools

- Source: R/RBesT-package.R + Source: R/RBesT-package.R
RBesT-package.Rd
diff --git a/reference/SimSum.html b/reference/SimSum.html index a3ab98f..57c394c 100644 --- a/reference/SimSum.html +++ b/reference/SimSum.html @@ -38,7 +38,7 @@

Summarize Arrays

- Source: R/SimSum.R + Source: R/SimSum.R
SimSum.Rd
diff --git a/reference/automixfit.html b/reference/automixfit.html index 5a597a4..24b2c63 100644 --- a/reference/automixfit.html +++ b/reference/automixfit.html @@ -48,7 +48,7 @@

Automatic Fitting of Mixtures of Conjugate Distributions to a Sample

- Source: R/automixfit.R + Source: R/automixfit.R
automixfit.Rd
diff --git a/reference/chains2sample.html b/reference/chains2sample.html index e5a64b6..9aae607 100644 --- a/reference/chains2sample.html +++ b/reference/chains2sample.html @@ -42,7 +42,7 @@

Scrambles the order of a mcmc array object for usage as a mcmc sample. It is advisable to set order once per mcmc run, otherwise correlations in the mcmc sample will be lost.

- Source: R/chains2sample.R + Source: R/chains2sample.R
chains2sample.Rd
diff --git a/reference/colVars.html b/reference/colVars.html index 913b82d..6344aab 100644 --- a/reference/colVars.html +++ b/reference/colVars.html @@ -38,7 +38,7 @@

Fast column-wise calculation of unbiased variances

- Source: R/colVars.R + Source: R/colVars.R
colVars.Rd
diff --git a/reference/colitis.html b/reference/colitis.html index b7ef18d..cc7bc6b 100644 --- a/reference/colitis.html +++ b/reference/colitis.html @@ -42,7 +42,7 @@

Ulcerative Colitis.

- Source: R/colitis.R + Source: R/colitis.R
colitis.Rd
diff --git a/reference/crohn.html b/reference/crohn.html index a0dbbed..013edb3 100644 --- a/reference/crohn.html +++ b/reference/crohn.html @@ -46,7 +46,7 @@

Crohn's disease.

- Source: R/crohn.R + Source: R/crohn.R
crohn.Rd
diff --git a/reference/dBetaBinomial.html b/reference/dBetaBinomial.html index 2e3b023..d28bd59 100644 --- a/reference/dBetaBinomial.html +++ b/reference/dBetaBinomial.html @@ -38,7 +38,7 @@

Beta-Binomial Probabilities

- Source: R/dBetaBinomial.R + Source: R/dBetaBinomial.R
dBetaBinomial.Rd
diff --git a/reference/decision1S.html b/reference/decision1S.html index 1208f18..bf8671a 100644 --- a/reference/decision1S.html +++ b/reference/decision1S.html @@ -40,7 +40,7 @@

Decision Function for 1 Sample Designs

- Source: R/decision1S.R + Source: R/decision1S.R
decision1S.Rd
diff --git a/reference/decision1S_boundary.html b/reference/decision1S_boundary.html index 2d64daf..69e004a 100644 --- a/reference/decision1S_boundary.html +++ b/reference/decision1S_boundary.html @@ -42,7 +42,7 @@

Decision Boundary for 1 Sample Designs

- Source: R/decision1S_boundary.R + Source: R/decision1S_boundary.R
decision1S_boundary.Rd
diff --git a/reference/decision2S.html b/reference/decision2S.html index 9e17c08..48d3951 100644 --- a/reference/decision2S.html +++ b/reference/decision2S.html @@ -40,7 +40,7 @@

Decision Function for 2 Sample Designs

- Source: R/decision2S.R + Source: R/decision2S.R
decision2S.Rd
diff --git a/reference/decision2S_boundary.html b/reference/decision2S_boundary.html index 8108c6b..5ce54ac 100644 --- a/reference/decision2S_boundary.html +++ b/reference/decision2S_boundary.html @@ -50,7 +50,7 @@

Decision Boundary for 2 Sample Designs

- Source: R/decision2S_boundary.R + Source: R/decision2S_boundary.R
decision2S_boundary.Rd
diff --git a/reference/dlink-set.html b/reference/dlink-set.html index 3ecc790..08f9e78 100644 --- a/reference/dlink-set.html +++ b/reference/dlink-set.html @@ -38,7 +38,7 @@

Transform Densities with a link function

- Source: R/dlink.R + Source: R/dlink.R
dlink-set.Rd
diff --git a/reference/ess.html b/reference/ess.html index b42f71e..395e16c 100644 --- a/reference/ess.html +++ b/reference/ess.html @@ -42,7 +42,7 @@

Effective Sample Size for a Conjugate Prior

- Source: R/mixess.R + Source: R/mixess.R
ess.Rd
diff --git a/reference/fill.html b/reference/fill.html index 60424a5..2562be0 100644 --- a/reference/fill.html +++ b/reference/fill.html @@ -40,7 +40,7 @@

Fill numeric objects

- Source: R/dlink.R + Source: R/dlink.R
fill.Rd
diff --git a/reference/forest_plot.html b/reference/forest_plot.html index 9cfa081..46646d6 100644 --- a/reference/forest_plot.html +++ b/reference/forest_plot.html @@ -38,7 +38,7 @@

Forest Plot

- Source: R/forest_plot.R + Source: R/forest_plot.R
forest_plot.Rd
diff --git a/reference/gMAP.html b/reference/gMAP.html index 5b6c8ae..c571b43 100644 --- a/reference/gMAP.html +++ b/reference/gMAP.html @@ -44,7 +44,7 @@

Meta-Analytic-Predictive Analysis for Generalized Linear Models

- Source: R/gMAP.R + Source: R/gMAP.R
gMAP.Rd
diff --git a/reference/integrate_density_log.html b/reference/integrate_density_log.html index 444de5f..32a38f4 100644 --- a/reference/integrate_density_log.html +++ b/reference/integrate_density_log.html @@ -44,7 +44,7 @@

internal function used for integration of densities which appears to be much more stable from -Inf to +Inf in the logit space while the density to be integrated recieves inputs from 0 to 1 such that the inverse distribution function must be used. The integral solved is int_x dmix(mix,x) integrand(x) where integrand must be given as log and we integrate over the support of mix.

- Source: R/integrate_logit_log.R + Source: R/integrate_logit_log.R
integrate_density_log.Rd
diff --git a/reference/knn.html b/reference/knn.html index d6048f7..8394606 100644 --- a/reference/knn.html +++ b/reference/knn.html @@ -38,7 +38,7 @@

k nearest neighbor algorithm for multi-variate data

- Source: R/knn.R + Source: R/knn.R
knn.Rd
diff --git a/reference/likelihood.html b/reference/likelihood.html index 64d6328..2b0c21f 100644 --- a/reference/likelihood.html +++ b/reference/likelihood.html @@ -38,7 +38,7 @@

Read and Set Likelihood to the Corresponding Conjugate Prior

- Source: R/likelihood.R + Source: R/likelihood.R
likelihood.Rd
diff --git a/reference/lodds.html b/reference/lodds.html index 79ae305..9077295 100644 --- a/reference/lodds.html +++ b/reference/lodds.html @@ -38,7 +38,7 @@

Logit (log-odds) and inverse-logit function.

- Source: R/lodds.R + Source: R/lodds.R
lodds.Rd
diff --git a/reference/logLik.EM.html b/reference/logLik.EM.html index bc582cd..2639afa 100644 --- a/reference/logLik.EM.html +++ b/reference/logLik.EM.html @@ -38,7 +38,7 @@

Extract log likelihood from fitted EM objects

- Source: R/EM_logLik.R + Source: R/EM_logLik.R
logLik.EM.Rd
diff --git a/reference/log_inv_logit.html b/reference/log_inv_logit.html index 0794099..b6cbce5 100644 --- a/reference/log_inv_logit.html +++ b/reference/log_inv_logit.html @@ -38,7 +38,7 @@

Numerically stable log of the inv_logit function

- Source: R/log_inv_logit.R + Source: R/log_inv_logit.R
log_inv_logit.Rd
diff --git a/reference/mix.html b/reference/mix.html index 1245325..8c8d7aa 100644 --- a/reference/mix.html +++ b/reference/mix.html @@ -44,7 +44,7 @@

Mixture Distributions

- Source: R/mix.R + Source: R/mix.R
mix.Rd
diff --git a/reference/mixbeta.html b/reference/mixbeta.html index d3381ac..620046b 100644 --- a/reference/mixbeta.html +++ b/reference/mixbeta.html @@ -38,7 +38,7 @@

Beta Mixture Density

- Source: R/mixbeta.R + Source: R/mixbeta.R
mixbeta.Rd
diff --git a/reference/mixcombine.html b/reference/mixcombine.html index f1faf13..905118a 100644 --- a/reference/mixcombine.html +++ b/reference/mixcombine.html @@ -38,7 +38,7 @@

Combine Mixture Distributions

- Source: R/mixcombine.R + Source: R/mixcombine.R
mixcombine.Rd
diff --git a/reference/mixdiff.html b/reference/mixdiff.html index 25f4833..22a5787 100644 --- a/reference/mixdiff.html +++ b/reference/mixdiff.html @@ -42,7 +42,7 @@

Difference of mixture distributions

- Source: R/mixdiff.R + Source: R/mixdiff.R
mixdiff.Rd
diff --git a/reference/mixdist3.html b/reference/mixdist3.html index 03e2492..5239f66 100644 --- a/reference/mixdist3.html +++ b/reference/mixdist3.html @@ -38,7 +38,7 @@

Utility function to instantiate 2 parameter mixture densities.

- Source: R/mixdist3.R + Source: R/mixdist3.R
mixdist3.Rd
diff --git a/reference/mixfit.html b/reference/mixfit.html index 7123c3c..18ac590 100644 --- a/reference/mixfit.html +++ b/reference/mixfit.html @@ -42,7 +42,7 @@

Fit of Mixture Densities to Samples

- Source: R/mixfit.R + Source: R/mixfit.R
mixfit.Rd
diff --git a/reference/mixgamma.html b/reference/mixgamma.html index b84d48d..e11899b 100644 --- a/reference/mixgamma.html +++ b/reference/mixgamma.html @@ -38,7 +38,7 @@

The Gamma Mixture Distribution

- Source: R/mixgamma.R + Source: R/mixgamma.R
mixgamma.Rd
diff --git a/reference/mixlink.html b/reference/mixlink.html index cb9d243..3b0dd92 100644 --- a/reference/mixlink.html +++ b/reference/mixlink.html @@ -40,7 +40,7 @@

takes x and transforms it according to the defined link function of the mixture

- Source: R/mix.R + Source: R/mix.R
mixlink.Rd
diff --git a/reference/mixmvnorm.html b/reference/mixmvnorm.html index 246e238..24f4acb 100644 --- a/reference/mixmvnorm.html +++ b/reference/mixmvnorm.html @@ -40,7 +40,7 @@

Multivariate Normal Mixture Density

- Source: R/mixmvnorm.R + Source: R/mixmvnorm.R
mixmvnorm.Rd
diff --git a/reference/mixnorm.html b/reference/mixnorm.html index d79b3ec..bde1073 100644 --- a/reference/mixnorm.html +++ b/reference/mixnorm.html @@ -38,7 +38,7 @@

Normal Mixture Density

- Source: R/mixnorm.R + Source: R/mixnorm.R
mixnorm.Rd
diff --git a/reference/mixplot.html b/reference/mixplot.html index 0360552..0679584 100644 --- a/reference/mixplot.html +++ b/reference/mixplot.html @@ -38,7 +38,7 @@

Plot mixture distributions

- Source: R/mixplot.R + Source: R/mixplot.R
mixplot.Rd
diff --git a/reference/mixstanvar.html b/reference/mixstanvar.html index 69041ab..657d078 100644 --- a/reference/mixstanvar.html +++ b/reference/mixstanvar.html @@ -42,7 +42,7 @@

Mixture distributions as brms priors

- Source: R/mixstanvar.R + Source: R/mixstanvar.R
mixstanvar.Rd
diff --git a/reference/oc1S.html b/reference/oc1S.html index 6443627..39e1555 100644 --- a/reference/oc1S.html +++ b/reference/oc1S.html @@ -46,7 +46,7 @@

Operating Characteristics for 1 Sample Design

- Source: R/oc1S.R + Source: R/oc1S.R
oc1S.Rd
diff --git a/reference/oc2S.html b/reference/oc2S.html index b00e949..905445e 100644 --- a/reference/oc2S.html +++ b/reference/oc2S.html @@ -46,7 +46,7 @@

Operating Characteristics for 2 Sample Design

- Source: R/oc2S.R + Source: R/oc2S.R
oc2S.Rd
diff --git a/reference/plot.EM.html b/reference/plot.EM.html index b75ccc9..71d8da6 100644 --- a/reference/plot.EM.html +++ b/reference/plot.EM.html @@ -38,7 +38,7 @@

Diagnostic plots for EM fits

- Source: R/EM_plot.R + Source: R/EM_plot.R
plot.EM.Rd
diff --git a/reference/plot.gMAP.html b/reference/plot.gMAP.html index 28a9157..6ee9506 100644 --- a/reference/plot.gMAP.html +++ b/reference/plot.gMAP.html @@ -38,7 +38,7 @@

Diagnostic plots for gMAP analyses

- Source: R/plot_gMAP.R + Source: R/plot_gMAP.R
plot.gMAP.Rd
diff --git a/reference/pos1S.html b/reference/pos1S.html index bf1cff0..d7e544b 100644 --- a/reference/pos1S.html +++ b/reference/pos1S.html @@ -46,7 +46,7 @@

Probability of Success for a 1 Sample Design

- Source: R/pos1S.R + Source: R/pos1S.R
pos1S.Rd
diff --git a/reference/pos2S.html b/reference/pos2S.html index 3128edc..8ca91b5 100644 --- a/reference/pos2S.html +++ b/reference/pos2S.html @@ -46,7 +46,7 @@

Probability of Success for 2 Sample Design

- Source: R/pos2S.R + Source: R/pos2S.R
pos2S.Rd
diff --git a/reference/postmix.html b/reference/postmix.html index 932e3e2..6df5dca 100644 --- a/reference/postmix.html +++ b/reference/postmix.html @@ -42,7 +42,7 @@

Conjugate Posterior Analysis

- Source: R/postmix.R + Source: R/postmix.R
postmix.Rd
diff --git a/reference/preddist.html b/reference/preddist.html index 7dd5be7..0bcc94d 100644 --- a/reference/preddist.html +++ b/reference/preddist.html @@ -40,7 +40,7 @@

Predictive Distributions for Mixture Distributions

- Source: R/preddist.R + Source: R/preddist.R
preddist.Rd
diff --git a/reference/predict.gMAP.html b/reference/predict.gMAP.html index 996a184..3f5469e 100644 --- a/reference/predict.gMAP.html +++ b/reference/predict.gMAP.html @@ -38,7 +38,7 @@

Predictions from gMAP analyses

- Source: R/predict_gMAP.R + Source: R/predict_gMAP.R
predict.gMAP.Rd
diff --git a/reference/robustify.html b/reference/robustify.html index 8bfd0ff..a8b0e3d 100644 --- a/reference/robustify.html +++ b/reference/robustify.html @@ -38,7 +38,7 @@

Robustify Mixture Priors

- Source: R/robustify.R + Source: R/robustify.R
robustify.Rd
diff --git a/reference/support.html b/reference/support.html index ef2e816..b94c246 100644 --- a/reference/support.html +++ b/reference/support.html @@ -38,7 +38,7 @@

Support of Distributions

- Source: R/support.R + Source: R/support.R
support.Rd
diff --git a/reference/transplant.html b/reference/transplant.html index e9c133c..88065a9 100644 --- a/reference/transplant.html +++ b/reference/transplant.html @@ -42,7 +42,7 @@

Transplant.

- Source: R/transplant.R + Source: R/transplant.R
transplant.Rd
diff --git a/reference/uniroot_int.html b/reference/uniroot_int.html index 4bc6a5c..45bd3e6 100644 --- a/reference/uniroot_int.html +++ b/reference/uniroot_int.html @@ -40,7 +40,7 @@

Find root of univariate function of integers

- Source: R/uniroot_int.R + Source: R/uniroot_int.R
uniroot_int.Rd