The macOS-12 environment is deprecated, consider switching to macOS-13, macOS-14 (macos-latest) or macOS-15. For more details, see https://github.com/actions/runner-images/issues/10721

GitHub Actions has encountered an internal error when running your job.

Running examples in 'peakCombiner-Ex.R' failed

object 'infolder' not found

Process completed with exit code 1.

Process completed with exit code 1.

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Invalid citation information in 'inst/CITATION':

'::' or ':::' imports not declared from:

checkRd: (3) blacklist_hg38.Rd:8-9: Empty section '\code{blacklist_hg38} A tibble with 910 rows and 3 columns:'

Missing link(s) in Rd file 'check_data_structure.Rd':

Undocumented arguments in Rd file 'cr_add_summit.Rd'

'::' or ':::' import not declared from: 'dplyr'

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5: