Add actions/checkout and r-lib setup to solve errors #88
Annotations
2 errors and 18 warnings
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Set up R and install BiocManager
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
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Set up R
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
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Set up R and install BiocManager
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R and install BiocManager
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Set up R and install BiocManager
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Run BiocCheck
unable to access index for repository https://bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
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Run BiocCheck
unable to access index for repository https://bioconductor.org/packages/3.21/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
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Run BiocCheck
unable to access index for repository https://bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
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Run BiocCheck
unable to access index for repository https://bioconductor.org/packages/3.21/books/bin/macosx/big-sur-arm64/contrib/4.4:
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Run BiocCheck
unable to access index for repository https://bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
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Run BiocCheck
unable to access index for repository https://bioconductor.org/packages/3.21/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
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Run BiocCheck
unable to access index for repository https://bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
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Install R package dependencies
unable to access index for repository https://bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
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Install R package dependencies
unable to access index for repository https://bioconductor.org/packages/3.21/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
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Install R package dependencies
unable to access index for repository https://bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
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Install R package dependencies
unable to access index for repository https://bioconductor.org/packages/3.21/books/bin/macosx/big-sur-arm64/contrib/4.4:
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Set up R
qpdf 11.9.1 is already installed and up-to-date.
To reinstall 11.9.1, run:
brew reinstall qpdf
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Set up R
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R
checkbashisms 2.25.1 is already installed and up-to-date.
To reinstall 2.25.1, run:
brew reinstall checkbashisms
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Set up R
ghostscript 10.04.0 is already installed and up-to-date.
To reinstall 10.04.0, run:
brew reinstall ghostscript
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