From 707a0e06b50becda19e8bb067e46bfd10fa403af Mon Sep 17 00:00:00 2001 From: Caibin Sheng Date: Sat, 27 Jul 2024 16:15:25 +0200 Subject: [PATCH] refactor(scar): refactor dataloading to improve efficiency --- scar/main/_scar.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scar/main/_scar.py b/scar/main/_scar.py index 9beef7a..24e2773 100644 --- a/scar/main/_scar.py +++ b/scar/main/_scar.py @@ -275,7 +275,7 @@ def __init__( raise ValueError(f"{batch_key} not found in AnnData.obs.") self.logger.info( - f"Estimating ambient profile for each batch defined by {batch_key} in AnnData.obs..." + f"Found {raw_count.obs[batch_key].nunique()} batches defined by {batch_key} in AnnData.obs. Estimating ambient profile per batch..." ) batch_id_per_cell = pd.Categorical(raw_count.obs[batch_key]).codes ambient_profile = np.empty((len(np.unique(batch_id_per_cell)),raw_count.shape[1]))