Merge pull request #612 from OBOFoundry/issue-611

Added preferred prefix for WBPhenotype
OBOFoundry · May 8, 2018 · 27c66d3 · 27c66d3
2 parents 727b486 + 7544b27
commit 27c66d3
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Showing 5 changed files with 13 additions and 135 deletions.
diff --git a/_layouts/ontology_detail.html b/_layouts/ontology_detail.html
@@ -44,6 +44,15 @@ <h1>
     {% endfor %}
   </div>
   {% endif %}
+
+  {% if page.preferredPrefix %}
+  <div>
+    <div class="alert alert-info" role="alert">
+      This ontology uses a mixed-case prefix. Identifiers and URIs
+      should use "{{page.preferredPrefix}}"
+    </div>
+  </div>
+  {% endif %}
 
   <div class="col-md-12">
 

diff --git a/ontology/wbphenotype.md b/ontology/wbphenotype.md
@@ -1,6 +1,7 @@
 ---
 layout: ontology_detail
 id: wbphenotype
+preferredPrefix: WBPhenotype
 contact:
   email: garys@caltech.edu
   label: Gary Schindelman

diff --git a/registry/context.jsonld b/registry/context.jsonld
diff --git a/registry/obo_context.jsonld b/registry/obo_context.jsonld
@@ -192,7 +192,7 @@
         "VTO": "http://purl.obolibrary.org/obo/VTO_",
         "WBBT": "http://purl.obolibrary.org/obo/WBBT_",
         "WBLS": "http://purl.obolibrary.org/obo/WBLS_",
-        "WBPHENOTYPE": "http://purl.obolibrary.org/obo/WBPHENOTYPE_",
+        "WBPhenotype": "http://purl.obolibrary.org/obo/WBPhenotype_",
         "XAO": "http://purl.obolibrary.org/obo/XAO_",
         "XCO": "http://purl.obolibrary.org/obo/XCO_",
         "XL": "http://purl.obolibrary.org/obo/XL_",

diff --git a/registry/ontologies.yml b/registry/ontologies.yml
@@ -1204,6 +1204,7 @@ ontologies:
   ontology_purl: http://purl.obolibrary.org/obo/fypo.owl
   products:
   - {id: fypo.owl, ontology_purl: 'http://purl.obolibrary.org/obo/fypo.owl'}
+  - {id: fypo.obo, ontology_purl: 'http://purl.obolibrary.org/obo/fypo.obo'}
   publications:
   - {id: 'http://www.ncbi.nlm.nih.gov/pubmed/23658422', title: 'FYPO: The Fission
       Yeast Phenotype Ontology.'}
@@ -2878,6 +2879,7 @@ ontologies:
   id: wbphenotype
   layout: ontology_detail
   ontology_purl: http://purl.obolibrary.org/obo/wbphenotype.owl
+  preferredPrefix: WBPhenotype
   products:
   - {id: wbphenotype.owl, ontology_purl: 'http://purl.obolibrary.org/obo/wbphenotype.owl'}
   - {id: wbphenotype.obo, ontology_purl: 'http://purl.obolibrary.org/obo/wbphenotype.obo'}