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application.yml
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server:
address: 0.0.0.0
proxy:
title: OHDSI Evidence Sharing
logo-url: file:///srv/ohdsi-logo.png
heartbeat-rate: 30000
heartbeat-timeout: 900000
port: 8080
default-max-instances: 1
authentication: none
docker:
internal-networking: false
specs:
- id: 01_SqlDeveloper
display-name: SqlRender Developer Application
description: This is the OHDSI SqlRender developer application
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/SqlDeveloper', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/sqldeveloper:1.0.0
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 02_LegendBasicViewer
display-name: OHDSI Legend basic viewer
description: This is the OHDSI Legend study basic viewer
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/LegendBasicViewer', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/legendbasicviewer:1.0.0
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 03_OhdsiPredictionTutorial
display-name: OHDSI Prediction Tutorial
description: This is the OHDSI Prediction Tutorial
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/OhdsiPredictionTutorial', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/ohdsipredictiontutorial:main
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 04_WhatllHappenToMe
display-name: Whatll Happen To Me
description: Find your personalized risk for hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/WhatllHappenToMe', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/whatllhappentome:0.0.5
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 05_HowOften_Andreas
display-name: How Often Andreas
description: Incidence of hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften:0.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
RESULT_DATABASE_SCHEMA: howoften_andreas
- id: 06_HowOften_Azza
display-name: How Often Azza
description: Incidence of hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften:0.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
RESULT_DATABASE_SCHEMA: howoften_azza
- id: 07_HowOften_Evan
display-name: How Often Evan
description: Incidence of hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften:0.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
RESULT_DATABASE_SCHEMA: howoften_evan
- id: 08_HowOften_George
display-name: How Often George
description: Incidence of hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften:0.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
RESULT_DATABASE_SCHEMA: howoften_george
- id: 09_HowOften_Gowza
display-name: How Often Gowza
description: Incidence of hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften:0.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
RESULT_DATABASE_SCHEMA: howoften_gowza
- id: 10_HowOften_Joel
display-name: How Often Joel
description: Incidence of hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften:0.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
RESULT_DATABASE_SCHEMA: howoften_joel
- id: 11_HowOften_overall
display-name: How Often overall
description: Incidence of hundreds of outcomes
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften:0.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
RESULT_DATABASE_SCHEMA: howoften_overall
- id: 12_HowOften_Db_diagnostics
display-name: How Often Db Diagnostics
description: Database diagnostics for how often study
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/HowOften_Db_Diagnostics', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/howoften_db_diagnostics:0.0.1
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
dbDiagnosticsdbSchema: analysis
- id: 13_DiagnosticsExplorerDemo
display-name: Diagnostics Explorer Demo
description: Demo of the diagnostics explorer app
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/diagnosticsexplorer:3.2.5
- id: 14_UveitisSafetyOutcomes
display-name: Uveitis Safety Outcomes
description: Cohort Diagnostics
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/outcomes', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/uvetis_safety:1.0.0
- id: 15_UveitisSafetyIndications
display-name: Uveitis Safety Indications
description: Cohort Diagnostics
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/indications', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/uvetis_safety:1.0.0
- id: 16_PhenotypePhebAlzh
display-name: Phenotype Phebruary Alzheimers
description: Cohort Diagnostics
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/phepheb2024:1.0.3
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
- id: 17_PhenotypePhebMdd
display-name: Phenotype Phebruary MDD
description: Cohort Diagnostics
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/phepheb2024:1.0.5
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
TABLE_PREFIX: mdd_
- id: 18_PhenotypePhebPah
display-name: Phenotype Phebruary PAH
description: Cohort Diagnostics
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/phepheb2024:1.0.5
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
TABLE_PREFIX: pah_
- id: 19_SOS_AA
display-name: SOS 2023 Aortic aneurysm cohorts
description: Cohort Diagnostics
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/phepheb2024:1.0.5
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
TABLE_PREFIX: sos_aa_
- id: 20_Semanaion_Char
display-name: Semaglutide NAION characterization results
description: Cohort Characterization
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/SemaglutideNaionCharApp', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/semaglutidenaioncharapp:1.0.11
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 21_Semanaion_Est
display-name: Semaglutide NAION population level estimation results
description: Population level estimation
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/SemaglutideNaionEstApp', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/semaglutidenaionestapp:1.0.6
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 22_ohdsi_analysis_viewer_app_demo
display-name: OHDSI Analysis Viewer Demo (2024)
description: OHDSI Analysis Viewer Demo (2024)
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/OhdsiAnalysisViewerDemoApp', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/ohdsianalysisviewerdemoapp:1.0.2
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 23_TutorialDemo2024
display-name: OHDSI Tutorial Demo 2024
description: This is the OHDSI Tutorial demo for 2024
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/TutorialDemo2024', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/tutorialdemo2024:0.0.3
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 24_Glp1Dili
display-name: GLP-1RA and acute liver injury
description: Population level estimation
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/Glp1DiliApp', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/glp1diliapp:1.0.5
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 25_EstimationTutorial
display-name: Estimation Tutorial
description: CohortMethod and SelfControlledCaseSeries tutorial for population-level estimation
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/EstimationTutorial', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/estimationtutorial:0.0.1
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root
- id: 26_PhenotypePhebruary2025
display-name: Phenotype Phebruary 2025
description: Shiny app for Phenotype Phebruary 2025
container-cmd: ["R", "-e", "shiny::runApp('/srv/shiny-server/PhenotypePhebruary2025', host = '0.0.0.0', port = 3838)"]
container-image: ohdsi/phenotypephebruary2025:1.0.3
container-volumes:
- "/home/jenkins/shinyproxy/.Renviron:/root/.Renviron"
- "/home/jenkins/minio/data/sp-app-data:/data"
container-env:
DATABASECONNECTOR_JAR_FOLDER: /root