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‎examples/atlas/sweep_results/Blood_ans.csv

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‎examples/atlas/sweep_results/Brain_ans.csv

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@@ -1466,7 +1466,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
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config_dict:
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feature_channel: feature.cell
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label_channel: cell_type
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14701470
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target: FilterGenesPercentile
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params: {}
@@ -2060,7 +2060,7 @@ e8681d74-ac9e-4be5-be14-1cf1bbd54dd7,"step2:https://wandb.ai/xzy11632/dance-dev/
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config_dict:
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feature_channel: feature.cell
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label_channel: cell_type
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93cb76aa-a84b-4a92-8e6c-66a914e26d4c,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/aqfmsmpx|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/sxj7ndgn,https://wandb.ai/xzy11632/dance-dev/sweeps/kf6pxhij,https://wandb.ai/xzy11632/dance-dev/sweeps/kfpas6cb","- type: filter.gene
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target: FilterGenesPlaceHolder
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params: {}

‎examples/atlas/sweep_results/Heart_ans.csv

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@@ -1,5 +1,5 @@
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Dataset_id,cta_actinn,cta_actinn_best_yaml,cta_actinn_best_res,cta_singlecellnet,cta_singlecellnet_best_yaml,cta_singlecellnet_best_res,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_celltypist,cta_celltypist_best_yaml,cta_celltypist_best_res,cta_scdeepsort_run_stats,cta_actinn_run_stats,cta_singlecellnet_run_stats,cta_celltypist_run_stats,cta_scdeepsort_check,cta_celltypist_check,cta_actinn_check,cta_singlecellnet_check
2-
5a11f879-d1ef-458a-910c-9b0bdfca5ebf,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/vzuxzpj3|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/d7f23zg1,https://wandb.ai/xzy11632/dance-dev/sweeps/uzh7wc9b,https://wandb.ai/xzy11632/dance-dev/sweeps/675mh1vq","- type: filter.gene
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5a11f879-d1ef-458a-910c-9b0bdfca5ebf,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/uvd74lau|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/j8nt0tvf,https://wandb.ai/xzy11632/dance-dev/sweeps/30givefv,https://wandb.ai/xzy11632/dance-dev/sweeps/ce943o71","- type: filter.gene
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target: FilterGenesPlaceHolder
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params: {}
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- type: normalize
@@ -78,7 +78,7 @@ Dataset_id,cta_actinn,cta_actinn_best_yaml,cta_actinn_best_res,cta_singlecellnet
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config_dict:
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feature_channel: feature.cell
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label_channel: cell_type
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target: FilterGenesPercentile
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params: {}
@@ -376,7 +376,7 @@ c5d88abe-f23a-45fa-a534-788985e93dad,"step2:https://wandb.ai/xzy11632/dance-dev/
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config_dict:
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feature_channel: feature.cell
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label_channel: cell_type
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target: FilterGenesScanpyOrder
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params:

‎examples/atlas/sweep_results/Intestine_ans.csv

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@@ -348,7 +348,7 @@ f7c1c579-2dc0-47e2-ba19-8165c5a0e353(Intestine),"step2:https://wandb.ai/xzy11632
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config_dict:
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feature_channel: feature.cell
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label_channel: cell_type
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- type: normalize

‎examples/atlas/sweep_results/Kidney_ans.csv

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@@ -458,7 +458,7 @@ dea717d4-7bc0-4e46-950f-fd7e1cc8df7d,"step2:https://wandb.ai/xzy11632/dance-dev/
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config_dict:
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feature_channel: feature.cell
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label_channel: cell_type
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params: {}
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- type: normalize
@@ -1003,7 +1003,7 @@ be39785b-67cb-4177-be19-a40ee3747e45,"step2:https://wandb.ai/xzy11632/dance-dev/
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config_dict:
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feature_channel: SCNFeature
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label_channel: cell_type
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1006+
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target: FilterGenesScanpyOrder
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params:
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order:
@@ -1098,7 +1098,7 @@ f801b7a9-80a6-4d09-9161-71474deb58ae,"step2:https://wandb.ai/xzy11632/dance-dev/
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config_dict:
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11041104
- type: normalize
@@ -1171,7 +1171,7 @@ f801b7a9-80a6-4d09-9161-71474deb58ae,"step2:https://wandb.ai/xzy11632/dance-dev/
11711171
config_dict:
11721172
feature_channel: feature.cell
11731173
label_channel: cell_type
1174-
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1174+
",0.332479178905487,all_total_runs:600|all_finished_runs:483|step2_total_runs:540|step2_finished_runs:423|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:20|finished_rate:80.50%,,,,,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/ajwsfjty|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/m73ege01,https://wandb.ai/xzy11632/dance-dev/sweeps/tnm2ji4l,https://wandb.ai/xzy11632/dance-dev/sweeps/acrse11l","- type: filter.gene
11751175
target: FilterGenesPlaceHolder
11761176
- type: normalize
11771177
target: NormalizeTotal
@@ -1288,7 +1288,7 @@ f801b7a9-80a6-4d09-9161-71474deb58ae,"step2:https://wandb.ai/xzy11632/dance-dev/
12881288
config_dict:
12891289
feature_channel: SCNFeature
12901290
label_channel: cell_type
1291-
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1291+
",0.37664233576642336,all_total_runs:150|all_finished_runs:96|step2_total_runs:90|step2_finished_runs:74|step3_0_total_runs:20|step3_0_finished_runs:1|step3_1_total_runs:20|step3_1_finished_runs:1|step3_2_total_runs:20|step3_2_finished_runs:20|finished_rate:64.00%,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/pvarw0pp|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/x4irukl6,https://wandb.ai/xzy11632/dance-dev/sweeps/5lzcuql4,https://wandb.ai/xzy11632/dance-dev/sweeps/h1ibvdke","- type: filter.gene
12921292
target: FilterGenesPlaceHolder
12931293
- type: normalize
12941294
target: Log1P
@@ -1358,7 +1358,7 @@ fd072bc3-2dfb-46f8-b4e3-467cb3223182,"step2:https://wandb.ai/xzy11632/dance-dev/
13581358
config_dict:
13591359
feature_channel: feature.cell
13601360
label_channel: cell_type
1361-
",0.28049999475479126,all_total_runs:600|all_finished_runs:487|step2_total_runs:540|step2_finished_runs:427|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:20|finished_rate:81.17%,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/rfy7muvr|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/0pdtdvge,https://wandb.ai/xzy11632/dance-dev/sweeps/7qoqqm29,https://wandb.ai/xzy11632/dance-dev/sweeps/z3tsakmq","- type: filter.gene
1361+
",0.2804999947547912,all_total_runs:600|all_finished_runs:487|step2_total_runs:540|step2_finished_runs:427|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:20|finished_rate:81.17%,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/rfy7muvr|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/0pdtdvge,https://wandb.ai/xzy11632/dance-dev/sweeps/7qoqqm29,https://wandb.ai/xzy11632/dance-dev/sweeps/z3tsakmq","- type: filter.gene
13621362
target: FilterGenesPercentile
13631363
params: {}
13641364
- type: normalize

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