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add warning message
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dance/automl_config/step2_config.py

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@@ -2,7 +2,7 @@
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import itertools
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import wandb
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from dance import logger
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from dance.automl_config.fun2code import fun2code_dict
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from dance.transforms.misc import SetConfig
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@@ -64,7 +64,7 @@ def get_transforms(config=None, set_data_config=True, save_raw=False):
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process."""
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if ("normalize" not in config.keys() or config.normalize
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!= "log1p") and ("gene_filter" in config.keys() and config.gene_filter == "highly_variable_genes"):
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logger.warning("Expects logarithmized data, except when flavor='seurat_v3', in which count data is expected.")
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return None
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transforms = []

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