Skip to content

Commit ee334bb

Browse files
xingzhongyuxingzhongyu
committed
Merge remote-tracking branch 'origin/celltype_annotation_automl' into celltype_annotation_automl
2 parents 6b6f79b + 135136c commit ee334bb

File tree

6 files changed

+48
-48
lines changed

6 files changed

+48
-48
lines changed

‎examples/atlas/sweep_results/Blood_ans.csv

+13-13
Large diffs are not rendered by default.

‎examples/atlas/sweep_results/Brain_ans.csv

+9-9
Original file line numberDiff line numberDiff line change
@@ -386,7 +386,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
386386
config_dict:
387387
feature_channel: feature.cell
388388
label_channel: cell_type
389-
",0.3549999892711639,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/hpa8itbf|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/yxhw6hrg,https://wandb.ai/xzy11632/dance-dev/sweeps/ogwvhde7,https://wandb.ai/xzy11632/dance-dev/sweeps/1mzn11g0","- type: filter.gene
389+
",0.35499998927116394,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/hpa8itbf|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/yxhw6hrg,https://wandb.ai/xzy11632/dance-dev/sweeps/ogwvhde7,https://wandb.ai/xzy11632/dance-dev/sweeps/1mzn11g0","- type: filter.gene
390390
target: FilterGenesPlaceHolder
391391
params: {}
392392
- type: normalize
@@ -1432,7 +1432,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
14321432
config_dict:
14331433
feature_channel: feature.cell
14341434
label_channel: cell_type
1435-
",0.3120000064373016,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/66gvcj96|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/dfkmrl1i,https://wandb.ai/xzy11632/dance-dev/sweeps/ciietvtw,https://wandb.ai/xzy11632/dance-dev/sweeps/f1mqyetb","- type: filter.gene
1435+
",0.31200000643730164,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/66gvcj96|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/dfkmrl1i,https://wandb.ai/xzy11632/dance-dev/sweeps/ciietvtw,https://wandb.ai/xzy11632/dance-dev/sweeps/f1mqyetb","- type: filter.gene
14361436
target: FilterGenesScanpyOrder
14371437
params:
14381438
order:
@@ -1497,7 +1497,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
14971497
config_dict:
14981498
feature_channel: feature.cell
14991499
label_channel: cell_type
1500-
",0.34150001406669617,all_total_runs:600|all_finished_runs:483|step2_total_runs:540|step2_finished_runs:423|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:20|finished_rate:80.50%,all_total_runs:150|all_finished_runs:104|step2_total_runs:90|step2_finished_runs:69|step3_0_total_runs:20|step3_0_finished_runs:17|step3_1_total_runs:20|step3_1_finished_runs:0|step3_2_total_runs:20|step3_2_finished_runs:18|finished_rate:69.33%,all_total_runs:510|all_finished_runs:346|step2_total_runs:450|step2_finished_runs:343|step3_0_total_runs:20|step3_0_finished_runs:1|step3_1_total_runs:20|step3_1_finished_runs:1|step3_2_total_runs:20|step3_2_finished_runs:1|finished_rate:67.84%,all_total_runs:196|all_finished_runs:144|step2_total_runs:150|step2_finished_runs:118|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:6|step3_2_total_runs:6|step3_2_finished_runs:0|finished_rate:73.47%,False,False,False,False
1500+
",0.3415000140666961,all_total_runs:600|all_finished_runs:483|step2_total_runs:540|step2_finished_runs:423|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:20|finished_rate:80.50%,all_total_runs:150|all_finished_runs:104|step2_total_runs:90|step2_finished_runs:69|step3_0_total_runs:20|step3_0_finished_runs:17|step3_1_total_runs:20|step3_1_finished_runs:0|step3_2_total_runs:20|step3_2_finished_runs:18|finished_rate:69.33%,all_total_runs:510|all_finished_runs:346|step2_total_runs:450|step2_finished_runs:343|step3_0_total_runs:20|step3_0_finished_runs:1|step3_1_total_runs:20|step3_1_finished_runs:1|step3_2_total_runs:20|step3_2_finished_runs:1|finished_rate:67.84%,all_total_runs:196|all_finished_runs:144|step2_total_runs:150|step2_finished_runs:118|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:6|step3_2_total_runs:6|step3_2_finished_runs:0|finished_rate:73.47%,False,False,False,False
15011501
9372df2d-13d6-4fac-980b-919a5b7eb483,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/nmy20c1k|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/bf71t9iq,https://wandb.ai/xzy11632/dance-dev/sweeps/hj5g01na,https://wandb.ai/xzy11632/dance-dev/sweeps/6yqm4q5t","- type: filter.gene
15021502
target: FilterGenesPercentile
15031503
params: {}
@@ -1660,7 +1660,7 @@ Dataset_id,cta_scdeepsort,cta_scdeepsort_best_yaml,cta_scdeepsort_best_res,cta_c
16601660
config_dict:
16611661
feature_channel: feature.cell
16621662
label_channel: cell_type
1663-
",0.4510000050067901,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/ol3ztzsp|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/4y8mkdbc,https://wandb.ai/xzy11632/dance-dev/sweeps/227yfu9d,https://wandb.ai/xzy11632/dance-dev/sweeps/p7ic9i6t","- type: filter.gene
1663+
",0.45100000500679016,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/ol3ztzsp|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/4y8mkdbc,https://wandb.ai/xzy11632/dance-dev/sweeps/227yfu9d,https://wandb.ai/xzy11632/dance-dev/sweeps/p7ic9i6t","- type: filter.gene
16641664
target: FilterGenesScanpyOrder
16651665
params:
16661666
order:
@@ -2038,7 +2038,7 @@ e8681d74-ac9e-4be5-be14-1cf1bbd54dd7,"step2:https://wandb.ai/xzy11632/dance-dev/
20382038
config_dict:
20392039
feature_channel: feature.cell
20402040
label_channel: cell_type
2041-
",0.4550000131130218,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/9ulcm4zs|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/lc65vlu9,https://wandb.ai/xzy11632/dance-dev/sweeps/102sw7wh,https://wandb.ai/xzy11632/dance-dev/sweeps/xg2gclj5","- type: filter.gene
2041+
",0.45500001311302185,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/9ulcm4zs|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/lc65vlu9,https://wandb.ai/xzy11632/dance-dev/sweeps/102sw7wh,https://wandb.ai/xzy11632/dance-dev/sweeps/xg2gclj5","- type: filter.gene
20422042
target: FilterGenesScanpyOrder
20432043
params:
20442044
order:
@@ -2091,7 +2091,7 @@ e8681d74-ac9e-4be5-be14-1cf1bbd54dd7,"step2:https://wandb.ai/xzy11632/dance-dev/
20912091
config_dict:
20922092
feature_channel: feature.cell
20932093
label_channel: cell_type
2094-
",0.47200000286102295,all_total_runs:600|all_finished_runs:484|step2_total_runs:540|step2_finished_runs:425|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:19|finished_rate:80.67%,all_total_runs:150|all_finished_runs:98|step2_total_runs:90|step2_finished_runs:62|step3_0_total_runs:20|step3_0_finished_runs:17|step3_1_total_runs:20|step3_1_finished_runs:18|step3_2_total_runs:20|step3_2_finished_runs:1|finished_rate:65.33%,all_total_runs:493|all_finished_runs:322|step2_total_runs:450|step2_finished_runs:301|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:3|step3_1_finished_runs:0|step3_2_total_runs:20|step3_2_finished_runs:1|finished_rate:65.31%,all_total_runs:182|all_finished_runs:77|step2_total_runs:150|step2_finished_runs:65|step3_0_total_runs:20|step3_0_finished_runs:12|step3_1_total_runs:6|step3_1_finished_runs:0|step3_2_total_runs:6|step3_2_finished_runs:0|finished_rate:42.31%,True,False,False,False
2094+
",0.4720000028610229,all_total_runs:600|all_finished_runs:484|step2_total_runs:540|step2_finished_runs:425|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:20|step3_1_finished_runs:20|step3_2_total_runs:20|step3_2_finished_runs:19|finished_rate:80.67%,all_total_runs:150|all_finished_runs:98|step2_total_runs:90|step2_finished_runs:62|step3_0_total_runs:20|step3_0_finished_runs:17|step3_1_total_runs:20|step3_1_finished_runs:18|step3_2_total_runs:20|step3_2_finished_runs:1|finished_rate:65.33%,all_total_runs:493|all_finished_runs:322|step2_total_runs:450|step2_finished_runs:301|step3_0_total_runs:20|step3_0_finished_runs:20|step3_1_total_runs:3|step3_1_finished_runs:0|step3_2_total_runs:20|step3_2_finished_runs:1|finished_rate:65.31%,all_total_runs:182|all_finished_runs:77|step2_total_runs:150|step2_finished_runs:65|step3_0_total_runs:20|step3_0_finished_runs:12|step3_1_total_runs:6|step3_1_finished_runs:0|step3_2_total_runs:6|step3_2_finished_runs:0|finished_rate:42.31%,True,False,False,False
20952095
93cb76aa-a84b-4a92-8e6c-66a914e26d4c,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/aqfmsmpx|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/sxj7ndgn,https://wandb.ai/xzy11632/dance-dev/sweeps/kf6pxhij,https://wandb.ai/xzy11632/dance-dev/sweeps/kfpas6cb","- type: filter.gene
20962096
target: FilterGenesPlaceHolder
20972097
params: {}
@@ -2784,7 +2784,7 @@ f64e1be1-de15-4d27-8da4-82225cd4c035,"step2:https://wandb.ai/xzy11632/dance-dev/
27842784
config_dict:
27852785
feature_channel: feature.cell
27862786
label_channel: cell_type
2787-
",0.4739454090595245,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/zzzd70pb|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/h6iokqel,https://wandb.ai/xzy11632/dance-dev/sweeps/8tcdt2ii,https://wandb.ai/xzy11632/dance-dev/sweeps/g7s2t70w","- type: filter.gene
2787+
",0.47394540905952454,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/zzzd70pb|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/h6iokqel,https://wandb.ai/xzy11632/dance-dev/sweeps/8tcdt2ii,https://wandb.ai/xzy11632/dance-dev/sweeps/g7s2t70w","- type: filter.gene
27882788
target: FilterGenesPlaceHolder
27892789
params: {}
27902790
- type: normalize
@@ -2878,7 +2878,7 @@ ed11cc3e-2947-407c-883c-c53b043917c3,"step2:https://wandb.ai/xzy11632/dance-dev/
28782878
config_dict:
28792879
feature_channel: feature.cell
28802880
label_channel: cell_type
2881-
",0.468804657459259,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/d2u4p3ti|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/5tarnk33,https://wandb.ai/xzy11632/dance-dev/sweeps/pyebz1b7,https://wandb.ai/xzy11632/dance-dev/sweeps/vtfdyrpk","- type: filter.gene
2881+
",0.46880465745925903,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/d2u4p3ti|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/5tarnk33,https://wandb.ai/xzy11632/dance-dev/sweeps/pyebz1b7,https://wandb.ai/xzy11632/dance-dev/sweeps/vtfdyrpk","- type: filter.gene
28822882
target: FilterGenesScanpyOrder
28832883
params:
28842884
order:
@@ -2979,7 +2979,7 @@ ed11cc3e-2947-407c-883c-c53b043917c3,"step2:https://wandb.ai/xzy11632/dance-dev/
29792979
config_dict:
29802980
feature_channel: feature.cell
29812981
label_channel: cell_type
2982-
",0.3235000073909759,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/o748tsyg|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/py2yh3r8,https://wandb.ai/xzy11632/dance-dev/sweeps/cdz2iob0,https://wandb.ai/xzy11632/dance-dev/sweeps/ax6j7ylt","- type: filter.gene
2982+
",0.32350000739097595,"step2:https://wandb.ai/xzy11632/dance-dev/sweeps/o748tsyg|step3:https://wandb.ai/xzy11632/dance-dev/sweeps/py2yh3r8,https://wandb.ai/xzy11632/dance-dev/sweeps/cdz2iob0,https://wandb.ai/xzy11632/dance-dev/sweeps/ax6j7ylt","- type: filter.gene
29832983
target: FilterGenesPercentile
29842984
params: {}
29852985
- type: normalize

0 commit comments

Comments
 (0)