From 8032ad5135779a4ac84bd9922ebdf7aa02258cf2 Mon Sep 17 00:00:00 2001
From: Heriette <la.heriette@gmail.com>
Date: Mon, 4 Dec 2023 12:15:38 +0100
Subject: [PATCH 1/3] Volcano plot 1.0.6 - qualitative changes

---
 .../Graphs/Volcano plot/.savedWithData        |   2 +-
 .../settings.xml                              |  60 ++
 .../settings.xml                              |  60 ++
 .../Boolean Configuration (#336)/settings.xml |  10 +-
 .../Column Appender (#1527)/settings.xml      |   4 +-
 .../Column Filter (#1530)/settings.xml        | 222 +++++
 .../Column Filter (#330)/settings.xml         |   6 +-
 .../Column Filter (#331)/settings.xml         |   6 +-
 .../Column Filter (#349)/settings.xml         |   6 +-
 .../settings.xml                              |  72 ++
 .../Column Rename _Regex_ (#351)/settings.xml |   6 +-
 .../Column Rename _Regex_ (#352)/settings.xml |   6 +-
 .../Column Rename _Regex_ (#353)/settings.xml |   6 +-
 .../settings.xml                              | 300 +++++++
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   6 +-
 .../settings.xml                              |   6 +-
 .../Component Input (#217)/settings.xml       |  12 +-
 .../Component Output (#219)/settings.xml      |   4 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   8 +-
 .../Double Configuration (#337)/settings.xml  |   6 +-
 .../Volcano plot/End IF (#1537)/settings.xml  |  39 +
 .../IF Switch (#1536)/settings.xml            |  59 ++
 .../settings.xml                              |   8 +-
 .../settings.xml                              |  63 ++
 .../Volcano plot/Joiner (#1532)/settings.xml  | 186 ++++
 .../Volcano plot/Joiner (#1534)/settings.xml  | 186 ++++
 .../settings.xml                              |  16 +-
 .../R Snippet (#1528)/settings.xml            |   8 +-
 .../R View _Table_ (#357)/settings.xml        |   8 +-
 .../settings.xml                              |  53 ++
 .../settings.xml                              |  10 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |  10 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |   8 +-
 .../settings.xml                              |  12 +-
 .../settings.xml                              |  12 +-
 .../settings.xml                              |  12 +-
 .../Graphs/Volcano plot/settings.xml          |  10 +-
 .../Graphs/Volcano plot/template.knime        |   4 +-
 .../Graphs/Volcano plot/workflow.knime        | 794 ++++++++++++------
 48 files changed, 1996 insertions(+), 382 deletions(-)
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1535)/settings.xml
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1555)/settings.xml
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Column Filter (#1530)/settings.xml
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#1533)/settings.xml
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#1539)/settings.xml
 rename Metanodes templates/Graphs/Volcano plot/{Column Selection Configuration (#346) => Column Selection Configuration (#1548)}/settings.xml (97%)
 rename Metanodes templates/Graphs/Volcano plot/{Double Configuration (#338) => Double Configuration (#1540)}/settings.xml (93%)
 rename Metanodes templates/Graphs/Volcano plot/{Double Configuration (#339) => Double Configuration (#1541)}/settings.xml (93%)
 create mode 100644 Metanodes templates/Graphs/Volcano plot/End IF (#1537)/settings.xml
 create mode 100644 Metanodes templates/Graphs/Volcano plot/IF Switch (#1536)/settings.xml
 rename Metanodes templates/Graphs/Volcano plot/{Integer Configuration (#373) => Integer Configuration (#1557)}/settings.xml (92%)
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Integer Configuration (#1559)/settings.xml
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Joiner (#1532)/settings.xml
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Joiner (#1534)/settings.xml
 rename Metanodes templates/Graphs/Volcano plot/{Python Edit Variable (#348) => Python Edit Variable _legacy_ (#348)}/settings.xml (87%)
 create mode 100644 Metanodes templates/Graphs/Volcano plot/Rule_based Row Splitter (#1566)/settings.xml
 rename Metanodes templates/Graphs/Volcano plot/{Single Selection Configuration (#372) => Single Selection Configuration (#1556)}/settings.xml (92%)
 rename Metanodes templates/Graphs/Volcano plot/{Single Selection Configuration (#374) => Single Selection Configuration (#1558)}/settings.xml (94%)
 rename Metanodes templates/Graphs/Volcano plot/{Single Selection Configuration (#375) => Single Selection Configuration (#1560)}/settings.xml (93%)
 rename Metanodes templates/Graphs/Volcano plot/{String Configuration (#340) => String Configuration (#1542)}/settings.xml (93%)
 rename Metanodes templates/Graphs/Volcano plot/{String Configuration (#341) => String Configuration (#1543)}/settings.xml (92%)
 rename Metanodes templates/Graphs/Volcano plot/{String Configuration (#342) => String Configuration (#1544)}/settings.xml (93%)
 rename Metanodes templates/Graphs/Volcano plot/{String Configuration (#343) => String Configuration (#1545)}/settings.xml (93%)
 rename Metanodes templates/Graphs/Volcano plot/{String Configuration (#344) => String Configuration (#1546)}/settings.xml (93%)
 rename Metanodes templates/Graphs/Volcano plot/{String Configuration (#376) => String Configuration (#1561)}/settings.xml (93%)
 rename Metanodes templates/Graphs/Volcano plot/{String Configuration (#378) => String Configuration (#1563)}/settings.xml (92%)
 rename Metanodes templates/Graphs/Volcano plot/{String Input (#377) => String Input _legacy_ (#1562)}/settings.xml (89%)
 rename Metanodes templates/Graphs/Volcano plot/{String Input (#1525) => String Input _legacy_ (#1564)}/settings.xml (90%)
 rename Metanodes templates/Graphs/Volcano plot/{String Input (#1526) => String Input _legacy_ (#1565)}/settings.xml (90%)

diff --git a/Metanodes templates/Graphs/Volcano plot/.savedWithData b/Metanodes templates/Graphs/Volcano plot/.savedWithData
index 34adf2cea..d7cbb0a66 100644
--- a/Metanodes templates/Graphs/Volcano plot/.savedWithData	
+++ b/Metanodes templates/Graphs/Volcano plot/.savedWithData	
@@ -1,4 +1,4 @@
 Do not delete this file!
 This file serves to indicate that the workflow was written as part of the usual save routine (not exported).
 
-Workflow was last saved by user knimeuser on Wed Feb 22 15:49:34 CET 2023
\ No newline at end of file
+Workflow was last saved by user knimeuser on Mon Dec 04 12:12:38 CET 2023
\ No newline at end of file
diff --git a/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1535)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1535)/settings.xml
new file mode 100644
index 000000000..ae1a82601
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1535)/settings.xml	
@@ -0,0 +1,60 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="defaultValue">
+            <entry key="boolean" type="xboolean" value="false"/>
+        </config>
+        <entry key="hideInDialog" type="xboolean" value="false"/>
+        <entry key="parameterName" type="xstring" value="qual_bool"/>
+        <entry key="label" type="xstring" value="Display also qualitative changes?"/>
+        <entry key="description" type="xstring" value="If checked, additional subplot will be created containing qualitative changes for cases where either p-value or logFC were missing"/>
+        <entry key="required" type="xboolean" value="true"/>
+        <entry key="flowVariableName" type="xstring" value="qual_bool"/>
+        <entry key="pushIntVar" type="xboolean" value="true"/>
+    </config>
+    <config key="nodeAnnotation">
+        <entry key="text" type="xstring" value="display qualitative%%00010changes"/>
+        <entry key="bgcolor" type="xint" value="16777215"/>
+        <entry key="x-coordinate" type="xint" value="350"/>
+        <entry key="y-coordinate" type="xint" value="-41"/>
+        <entry key="width" type="xint" value="142"/>
+        <entry key="height" type="xint" value="32"/>
+        <entry key="alignment" type="xstring" value="CENTER"/>
+        <entry key="borderSize" type="xint" value="0"/>
+        <entry key="borderColor" type="xint" value="16777215"/>
+        <entry key="defFontSize" type="xint" value="10"/>
+        <entry key="annotation-version" type="xint" value="20151123"/>
+        <config key="styles"/>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.bool.BooleanDialogNodeFactory"/>
+    <entry key="node-name" type="xstring" value="Boolean Configuration"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Boolean Configuration"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1555)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1555)/settings.xml
new file mode 100644
index 000000000..15b2ba5cd
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1555)/settings.xml	
@@ -0,0 +1,60 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="defaultValue">
+            <entry key="boolean" type="xboolean" value="false"/>
+        </config>
+        <entry key="hideInDialog" type="xboolean" value="false"/>
+        <entry key="parameterName" type="xstring" value="label_qual"/>
+        <entry key="label" type="xstring" value="Label also qualitative changes?"/>
+        <entry key="description" type="xstring" value="If checked, cases with only qualitative changes will be also labelled based on the selected criteria. This setting will be only used if qualitative changes are to be displayed"/>
+        <entry key="required" type="xboolean" value="true"/>
+        <entry key="flowVariableName" type="xstring" value="label_qual"/>
+        <entry key="pushIntVar" type="xboolean" value="true"/>
+    </config>
+    <config key="nodeAnnotation">
+        <entry key="text" type="xstring" value="label also%%00010qualitative changes?"/>
+        <entry key="bgcolor" type="xint" value="16777215"/>
+        <entry key="x-coordinate" type="xint" value="510"/>
+        <entry key="y-coordinate" type="xint" value="119"/>
+        <entry key="width" type="xint" value="142"/>
+        <entry key="height" type="xint" value="32"/>
+        <entry key="alignment" type="xstring" value="CENTER"/>
+        <entry key="borderSize" type="xint" value="0"/>
+        <entry key="borderColor" type="xint" value="16777215"/>
+        <entry key="defFontSize" type="xint" value="10"/>
+        <entry key="annotation-version" type="xint" value="20151123"/>
+        <config key="styles"/>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.bool.BooleanDialogNodeFactory"/>
+    <entry key="node-name" type="xstring" value="Boolean Configuration"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Boolean Configuration"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#336)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#336)/settings.xml
index ac4b2f6ea..39c0cd9bc 100644
--- a/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#336)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#336)/settings.xml	
@@ -41,21 +41,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
-    <config key="nodecontainer_message">
-        <entry key="type" type="xstring" value="WARNING"/>
-        <entry key="message" type="xstring" value="Component does not have input data, execute upstream nodes first"/>
-    </config>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.bool.BooleanDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Boolean Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Boolean Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Appender (#1527)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Appender (#1527)/settings.xml
index 2ae0286d0..81e100936 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Appender (#1527)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Appender (#1527)/settings.xml	
@@ -38,11 +38,11 @@
     <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings"/>
     <config key="node_creation_config">
         <config key="input">
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Filter (#1530)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Filter (#1530)/settings.xml
new file mode 100644
index 000000000..bb7f95acb
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Column Filter (#1530)/settings.xml	
@@ -0,0 +1,222 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="column-filter">
+            <entry key="filter-type" type="xstring" value="STANDARD"/>
+            <config key="included_names">
+                <entry key="array-size" type="xint" value="0"/>
+            </config>
+            <config key="excluded_names">
+                <entry key="array-size" type="xint" value="126"/>
+                <entry key="0" type="xstring" value="PG.ID"/>
+                <entry key="1" type="xstring" value="Protein.Group"/>
+                <entry key="2" type="xstring" value="Lib.PG.Q.Value"/>
+                <entry key="3" type="xstring" value="UniProt_Entry"/>
+                <entry key="4" type="xstring" value="UniProt_Protein names"/>
+                <entry key="5" type="xstring" value="PG.Prec.Norm.Sum+1_1"/>
+                <entry key="6" type="xstring" value="PG.Prec.Norm.Sum+1_2"/>
+                <entry key="7" type="xstring" value="PG.Prec.Norm.Sum+1_3"/>
+                <entry key="8" type="xstring" value="PG.Prec.Norm.Sum+2_1"/>
+                <entry key="9" type="xstring" value="PG.Prec.Norm.Sum+2_2"/>
+                <entry key="10" type="xstring" value="PG.Prec.Norm.Sum+2_3"/>
+                <entry key="11" type="xstring" value="PG.Q.Value+1_1"/>
+                <entry key="12" type="xstring" value="PG.Q.Value+1_2"/>
+                <entry key="13" type="xstring" value="PG.Q.Value+1_3"/>
+                <entry key="14" type="xstring" value="PG.Q.Value+2_1"/>
+                <entry key="15" type="xstring" value="PG.Q.Value+2_2"/>
+                <entry key="16" type="xstring" value="PG.Q.Value+2_3"/>
+                <entry key="17" type="xstring" value="Protein.Q.Value+1_1"/>
+                <entry key="18" type="xstring" value="Protein.Q.Value+1_2"/>
+                <entry key="19" type="xstring" value="Protein.Q.Value+1_3"/>
+                <entry key="20" type="xstring" value="Protein.Q.Value+2_1"/>
+                <entry key="21" type="xstring" value="Protein.Q.Value+2_2"/>
+                <entry key="22" type="xstring" value="Protein.Q.Value+2_3"/>
+                <entry key="23" type="xstring" value="UniProt_Mass"/>
+                <entry key="24" type="xstring" value="UniProt_Length"/>
+                <entry key="25" type="xstring" value="UniProt_Sequence"/>
+                <entry key="26" type="xstring" value="UniProt_InterPro"/>
+                <entry key="27" type="xstring" value="UniProt_Pfam"/>
+                <entry key="28" type="xstring" value="UniProt_IntAct"/>
+                <entry key="29" type="xstring" value="Stripped.Sequence (Concatenate)"/>
+                <entry key="30" type="xstring" value="Stripped.Sequence (Count)"/>
+                <entry key="31" type="xstring" value="UniProt_Protein ID"/>
+                <entry key="32" type="xstring" value="UniProt_Entry Name"/>
+                <entry key="33" type="xstring" value="UniProt_Reviewed"/>
+                <entry key="34" type="xstring" value="UniProt_Gene Names (primary)"/>
+                <entry key="35" type="xstring" value="UniProt_Organism"/>
+                <entry key="36" type="xstring" value="UniProt_Gene Ontology (GO)"/>
+                <entry key="37" type="xstring" value="UniProt_Gene Ontology (biological process)"/>
+                <entry key="38" type="xstring" value="UniProt_Gene Ontology (molecular function)"/>
+                <entry key="39" type="xstring" value="UniProt_Gene Ontology (cellular component)"/>
+                <entry key="40" type="xstring" value="UniProt_Gene Ontology IDs"/>
+                <entry key="41" type="xstring" value="UniProt_Subcellular location [CC]"/>
+                <entry key="42" type="xstring" value="UniProt_Protein families"/>
+                <entry key="43" type="xstring" value="UniProt_Interacts with"/>
+                <entry key="44" type="xstring" value="PG.Quantity_sum"/>
+                <entry key="45" type="xstring" value="PG.MaxLFQ+1_1"/>
+                <entry key="46" type="xstring" value="PG.MaxLFQ+1_2"/>
+                <entry key="47" type="xstring" value="PG.MaxLFQ+1_3"/>
+                <entry key="48" type="xstring" value="PG.MaxLFQ+2_1"/>
+                <entry key="49" type="xstring" value="PG.MaxLFQ+2_2"/>
+                <entry key="50" type="xstring" value="PG.MaxLFQ+2_3"/>
+                <entry key="51" type="xstring" value="PG.Normalised+1_1"/>
+                <entry key="52" type="xstring" value="PG.Normalised+1_2"/>
+                <entry key="53" type="xstring" value="PG.Normalised+1_3"/>
+                <entry key="54" type="xstring" value="PG.Normalised+2_1"/>
+                <entry key="55" type="xstring" value="PG.Normalised+2_2"/>
+                <entry key="56" type="xstring" value="PG.Normalised+2_3"/>
+                <entry key="57" type="xstring" value="PG.Quantity+1_1"/>
+                <entry key="58" type="xstring" value="PG.Quantity+1_2"/>
+                <entry key="59" type="xstring" value="PG.Quantity+1_3"/>
+                <entry key="60" type="xstring" value="PG.Quantity+2_1"/>
+                <entry key="61" type="xstring" value="PG.Quantity+2_2"/>
+                <entry key="62" type="xstring" value="PG.Quantity+2_3"/>
+                <entry key="63" type="xstring" value="Precursor.Id+1_1"/>
+                <entry key="64" type="xstring" value="Precursor.Id+1_2"/>
+                <entry key="65" type="xstring" value="Precursor.Id+1_3"/>
+                <entry key="66" type="xstring" value="Precursor.Id+2_1"/>
+                <entry key="67" type="xstring" value="Precursor.Id+2_2"/>
+                <entry key="68" type="xstring" value="Precursor.Id+2_3"/>
+                <entry key="69" type="xstring" value="Proteotypic+1_1"/>
+                <entry key="70" type="xstring" value="Proteotypic+1_2"/>
+                <entry key="71" type="xstring" value="Proteotypic+1_3"/>
+                <entry key="72" type="xstring" value="Proteotypic+2_1"/>
+                <entry key="73" type="xstring" value="Proteotypic+2_2"/>
+                <entry key="74" type="xstring" value="Proteotypic+2_3"/>
+                <entry key="75" type="xstring" value="PG.Prec.Norm.Sum+1_1_log2"/>
+                <entry key="76" type="xstring" value="PG.Prec.Norm.Sum+1_2_log2"/>
+                <entry key="77" type="xstring" value="PG.Prec.Norm.Sum+1_3_log2"/>
+                <entry key="78" type="xstring" value="PG.Prec.Norm.Sum+2_1_log2"/>
+                <entry key="79" type="xstring" value="PG.Prec.Norm.Sum+2_2_log2"/>
+                <entry key="80" type="xstring" value="PG.Prec.Norm.Sum+2_3_log2"/>
+                <entry key="81" type="xstring" value="PG.Q.Value+1_1_log2"/>
+                <entry key="82" type="xstring" value="PG.Q.Value+1_2_log2"/>
+                <entry key="83" type="xstring" value="PG.Q.Value+1_3_log2"/>
+                <entry key="84" type="xstring" value="PG.Q.Value+2_1_log2"/>
+                <entry key="85" type="xstring" value="PG.Q.Value+2_2_log2"/>
+                <entry key="86" type="xstring" value="PG.Q.Value+2_3_log2"/>
+                <entry key="87" type="xstring" value="PG.Quantity_sum_log2"/>
+                <entry key="88" type="xstring" value="PG.MaxLFQ+1_1_log2"/>
+                <entry key="89" type="xstring" value="PG.MaxLFQ+1_2_log2"/>
+                <entry key="90" type="xstring" value="PG.MaxLFQ+1_3_log2"/>
+                <entry key="91" type="xstring" value="PG.MaxLFQ+2_1_log2"/>
+                <entry key="92" type="xstring" value="PG.MaxLFQ+2_2_log2"/>
+                <entry key="93" type="xstring" value="PG.MaxLFQ+2_3_log2"/>
+                <entry key="94" type="xstring" value="PG.Quantity+1_1_log2"/>
+                <entry key="95" type="xstring" value="PG.Quantity+1_2_log2"/>
+                <entry key="96" type="xstring" value="PG.Quantity+1_3_log2"/>
+                <entry key="97" type="xstring" value="PG.Quantity+2_1_log2"/>
+                <entry key="98" type="xstring" value="PG.Quantity+2_2_log2"/>
+                <entry key="99" type="xstring" value="PG.Quantity+2_3_log2"/>
+                <entry key="100" type="xstring" value="Proteotypic_max"/>
+                <entry key="101" type="xstring" value="PG.Normalised+1_1_log2"/>
+                <entry key="102" type="xstring" value="PG.Normalised+1_2_log2"/>
+                <entry key="103" type="xstring" value="PG.Normalised+1_3_log2"/>
+                <entry key="104" type="xstring" value="PG.Normalised+2_1_log2"/>
+                <entry key="105" type="xstring" value="PG.Normalised+2_2_log2"/>
+                <entry key="106" type="xstring" value="PG.Normalised+2_3_log2"/>
+                <entry key="107" type="xstring" value="PG.MaxLFQ+1_1_log2_bin"/>
+                <entry key="108" type="xstring" value="PG.MaxLFQ+1_2_log2_bin"/>
+                <entry key="109" type="xstring" value="PG.MaxLFQ+1_3_log2_bin"/>
+                <entry key="110" type="xstring" value="PG.MaxLFQ+2_1_log2_bin"/>
+                <entry key="111" type="xstring" value="PG.MaxLFQ+2_2_log2_bin"/>
+                <entry key="112" type="xstring" value="PG.MaxLFQ+2_3_log2_bin"/>
+                <entry key="113" type="xstring" value="PG.MaxLFQ_all_log2_bin_sum"/>
+                <entry key="114" type="xstring" value="PG.MaxLFQ_A_log2_bin_sum"/>
+                <entry key="115" type="xstring" value="PG.MaxLFQ_B_log2_bin_sum"/>
+                <entry key="116" type="xstring" value="LIMMA_DIA_s2-s1.logFC"/>
+                <entry key="117" type="xstring" value="LIMMA_DIA_s2-s1.AveExpr"/>
+                <entry key="118" type="xstring" value="LIMMA_DIA_s2-s1.t"/>
+                <entry key="119" type="xstring" value="LIMMA_DIA_s2-s1.P.Value"/>
+                <entry key="120" type="xstring" value="LIMMA_DIA_s2-s1.adj.P.Val"/>
+                <entry key="121" type="xstring" value="LIMMA_DIA_s2-s1.B"/>
+                <entry key="122" type="xstring" value="PG.MaxLFQ+S1_median"/>
+                <entry key="123" type="xstring" value="PG.MaxLFQ+S2_median"/>
+                <entry key="124" type="xstring" value="S1/S2_ratio"/>
+                <entry key="125" type="xstring" value="S1/S2_ratio_all"/>
+            </config>
+            <entry key="enforce_option" type="xstring" value="EnforceInclusion"/>
+            <config key="name_pattern">
+                <entry key="pattern" type="xstring" value=""/>
+                <entry key="type" type="xstring" value="Wildcard"/>
+                <entry key="caseSensitive" type="xboolean" value="true"/>
+                <entry key="excludeMatching" type="xboolean" value="false"/>
+            </config>
+            <config key="datatype">
+                <config key="typelist">
+                    <entry key="org.knime.core.data.DoubleValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.StringValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.IntValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.BooleanValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.LongValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.date.DateAndTimeValue" type="xboolean" value="false"/>
+                </config>
+            </config>
+        </config>
+    </config>
+    <config key="variables">
+        <entry key="version" type="xstring" value="V_2019_09_13"/>
+        <config key="tree">
+            <config key="column-filter">
+                <config key="included_names">
+                    <entry key="used_variable" type="xstring" value="ratio_column"/>
+                    <entry key="exposed_variable" type="xstring" isnull="true" value=""/>
+                </config>
+            </config>
+        </config>
+    </config>
+    <config key="nodeAnnotation">
+        <entry key="text" type="xstring" value="select ID %%00010column only"/>
+        <entry key="bgcolor" type="xint" value="16777215"/>
+        <entry key="x-coordinate" type="xint" value="369"/>
+        <entry key="y-coordinate" type="xint" value="959"/>
+        <entry key="width" type="xint" value="142"/>
+        <entry key="height" type="xint" value="32"/>
+        <entry key="alignment" type="xstring" value="CENTER"/>
+        <entry key="borderSize" type="xint" value="0"/>
+        <entry key="borderColor" type="xint" value="16777215"/>
+        <entry key="defFontSize" type="xint" value="10"/>
+        <entry key="annotation-version" type="xint" value="20151123"/>
+        <config key="styles">
+            <config key="style_0">
+                <entry key="start" type="xint" value="21"/>
+                <entry key="length" type="xint" value="1"/>
+                <entry key="fontname" type="xstring" value="Sans"/>
+                <entry key="fontstyle" type="xint" value="0"/>
+                <entry key="fontsize" type="xint" value="10"/>
+                <entry key="fgcolor" type="xint" value="0"/>
+            </config>
+        </config>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.base.node.preproc.filter.column.DataColumnSpecFilterNodeFactory"/>
+    <entry key="node-name" type="xstring" value="Column Filter"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Column Filter"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Filter (#330)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Filter (#330)/settings.xml
index cffe65c42..999bdce95 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Filter (#330)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Filter (#330)/settings.xml	
@@ -1461,17 +1461,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.base.node.preproc.filter.column.DataColumnSpecFilterNodeFactory"/>
     <entry key="node-name" type="xstring" value="Column Filter"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Filter"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Filter (#331)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Filter (#331)/settings.xml
index 1571c47aa..b509cb3e6 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Filter (#331)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Filter (#331)/settings.xml	
@@ -1461,17 +1461,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.base.node.preproc.filter.column.DataColumnSpecFilterNodeFactory"/>
     <entry key="node-name" type="xstring" value="Column Filter"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Filter"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Filter (#349)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Filter (#349)/settings.xml
index 2992ba82d..ae7ce55e1 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Filter (#349)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Filter (#349)/settings.xml	
@@ -159,17 +159,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.base.node.preproc.filter.column.DataColumnSpecFilterNodeFactory"/>
     <entry key="node-name" type="xstring" value="Column Filter"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Filter"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#1533)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#1533)/settings.xml
new file mode 100644
index 000000000..2374bee50
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#1533)/settings.xml	
@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <entry key="searchString" type="xstring" value="(.+)"/>
+        <entry key="replaceString" type="xstring" value="Ratio"/>
+        <entry key="isCaseInsensitive" type="xboolean" value="false"/>
+        <entry key="isLiteral" type="xboolean" value="true"/>
+    </config>
+    <config key="variables">
+        <entry key="version" type="xstring" value="V_2019_09_13"/>
+        <config key="tree">
+            <config key="searchString">
+                <entry key="used_variable" type="xstring" value="ratio_column"/>
+                <entry key="exposed_variable" type="xstring" isnull="true" value=""/>
+            </config>
+        </config>
+    </config>
+    <config key="nodeAnnotation">
+        <entry key="text" type="xstring" value="new name: Ratio"/>
+        <entry key="bgcolor" type="xint" value="16777215"/>
+        <entry key="x-coordinate" type="xint" value="610"/>
+        <entry key="y-coordinate" type="xint" value="959"/>
+        <entry key="width" type="xint" value="142"/>
+        <entry key="height" type="xint" value="17"/>
+        <entry key="alignment" type="xstring" value="CENTER"/>
+        <entry key="borderSize" type="xint" value="0"/>
+        <entry key="borderColor" type="xint" value="16777215"/>
+        <entry key="defFontSize" type="xint" value="10"/>
+        <entry key="annotation-version" type="xint" value="20151123"/>
+        <config key="styles">
+            <config key="style_0">
+                <entry key="start" type="xint" value="0"/>
+                <entry key="length" type="xint" value="15"/>
+                <entry key="fontname" type="xstring" value="Sans"/>
+                <entry key="fontstyle" type="xint" value="0"/>
+                <entry key="fontsize" type="xint" value="10"/>
+                <entry key="fgcolor" type="xint" value="0"/>
+            </config>
+        </config>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.base.node.preproc.columnrenameregex.ColumnRenameRegexNodeFactory"/>
+    <entry key="node-name" type="xstring" value="Column Rename (Regex)"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Column Rename (Regex)"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#351)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#351)/settings.xml
index 47a4bf309..39ce6f0b0 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#351)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#351)/settings.xml	
@@ -35,17 +35,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.base.node.preproc.columnrenameregex.ColumnRenameRegexNodeFactory"/>
     <entry key="node-name" type="xstring" value="Column Rename (Regex)"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Rename (Regex)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#352)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#352)/settings.xml
index 71cf47937..6133f180a 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#352)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#352)/settings.xml	
@@ -44,17 +44,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.base.node.preproc.columnrenameregex.ColumnRenameRegexNodeFactory"/>
     <entry key="node-name" type="xstring" value="Column Rename (Regex)"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Rename (Regex)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#353)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#353)/settings.xml
index 402fad3e4..a342ba083 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#353)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Rename _Regex_ (#353)/settings.xml	
@@ -44,17 +44,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.base.node.preproc.columnrenameregex.ColumnRenameRegexNodeFactory"/>
     <entry key="node-name" type="xstring" value="Column Rename (Regex)"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Rename (Regex)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#1539)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#1539)/settings.xml
new file mode 100644
index 000000000..499023ac8
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#1539)/settings.xml	
@@ -0,0 +1,300 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="defaultValue">
+            <entry key="column" type="xstring" value="PG.ID"/>
+        </config>
+        <entry key="hideInDialog" type="xboolean" value="false"/>
+        <entry key="parameterName" type="xstring" value="ratio_column"/>
+        <entry key="label" type="xstring" value="Column containing qualitative changes"/>
+        <entry key="description" type="xstring" value="Select the column containing qualitative changes (such as ratio), if these are to be plotted. These values should be in the logFC format, any desired transformation needs to be performed prior to running this metanode"/>
+        <entry key="required" type="xboolean" value="true"/>
+        <entry key="flowVariableName" type="xstring" value="ratio_column"/>
+        <config key="possibleColumns">
+            <entry key="array-size" type="xint" value="214"/>
+            <entry key="0" type="xstring" value="PG.ID"/>
+            <entry key="1" type="xstring" value="Protein.Group"/>
+            <entry key="2" type="xstring" value="Lib.PG.Q.Value"/>
+            <entry key="3" type="xstring" value="UniProt_Entry"/>
+            <entry key="4" type="xstring" value="UniProt_Protein names"/>
+            <entry key="5" type="xstring" value="PG.MaxLFQ+MBT_300_2"/>
+            <entry key="6" type="xstring" value="PG.MaxLFQ+D355N_300_1"/>
+            <entry key="7" type="xstring" value="PG.MaxLFQ+D355N_300_2"/>
+            <entry key="8" type="xstring" value="PG.MaxLFQ+MBT_600_1"/>
+            <entry key="9" type="xstring" value="PG.MaxLFQ+MBT_600_2"/>
+            <entry key="10" type="xstring" value="PG.MaxLFQ+D355N_600_1"/>
+            <entry key="11" type="xstring" value="PG.MaxLFQ+D355N_600_2"/>
+            <entry key="12" type="xstring" value="PG.MaxLFQ+MBT_150_1"/>
+            <entry key="13" type="xstring" value="PG.MaxLFQ+MBT_150_2"/>
+            <entry key="14" type="xstring" value="PG.MaxLFQ+D355N_150_1"/>
+            <entry key="15" type="xstring" value="PG.MaxLFQ+D355N_150_2"/>
+            <entry key="16" type="xstring" value="PG.MaxLFQ+MBT_300_1"/>
+            <entry key="17" type="xstring" value="PG.Normalised+MBT_300_2"/>
+            <entry key="18" type="xstring" value="PG.Normalised+D355N_300_1"/>
+            <entry key="19" type="xstring" value="PG.Normalised+D355N_300_2"/>
+            <entry key="20" type="xstring" value="PG.Normalised+MBT_600_1"/>
+            <entry key="21" type="xstring" value="PG.Normalised+MBT_600_2"/>
+            <entry key="22" type="xstring" value="PG.Normalised+D355N_600_1"/>
+            <entry key="23" type="xstring" value="PG.Normalised+D355N_600_2"/>
+            <entry key="24" type="xstring" value="PG.Normalised+MBT_150_1"/>
+            <entry key="25" type="xstring" value="PG.Normalised+MBT_150_2"/>
+            <entry key="26" type="xstring" value="PG.Normalised+D355N_150_1"/>
+            <entry key="27" type="xstring" value="PG.Normalised+D355N_150_2"/>
+            <entry key="28" type="xstring" value="PG.Normalised+MBT_300_1"/>
+            <entry key="29" type="xstring" value="PG.Prec.Norm.Sum+MBT_300_2"/>
+            <entry key="30" type="xstring" value="PG.Prec.Norm.Sum+D355N_300_1"/>
+            <entry key="31" type="xstring" value="PG.Prec.Norm.Sum+D355N_300_2"/>
+            <entry key="32" type="xstring" value="PG.Prec.Norm.Sum+MBT_600_1"/>
+            <entry key="33" type="xstring" value="PG.Prec.Norm.Sum+MBT_600_2"/>
+            <entry key="34" type="xstring" value="PG.Prec.Norm.Sum+D355N_600_1"/>
+            <entry key="35" type="xstring" value="PG.Prec.Norm.Sum+D355N_600_2"/>
+            <entry key="36" type="xstring" value="PG.Prec.Norm.Sum+MBT_150_1"/>
+            <entry key="37" type="xstring" value="PG.Prec.Norm.Sum+MBT_150_2"/>
+            <entry key="38" type="xstring" value="PG.Prec.Norm.Sum+D355N_150_1"/>
+            <entry key="39" type="xstring" value="PG.Prec.Norm.Sum+D355N_150_2"/>
+            <entry key="40" type="xstring" value="PG.Prec.Norm.Sum+MBT_300_1"/>
+            <entry key="41" type="xstring" value="PG.Q.Value+MBT_300_2"/>
+            <entry key="42" type="xstring" value="PG.Q.Value+D355N_300_1"/>
+            <entry key="43" type="xstring" value="PG.Q.Value+D355N_300_2"/>
+            <entry key="44" type="xstring" value="PG.Q.Value+MBT_600_1"/>
+            <entry key="45" type="xstring" value="PG.Q.Value+MBT_600_2"/>
+            <entry key="46" type="xstring" value="PG.Q.Value+D355N_600_1"/>
+            <entry key="47" type="xstring" value="PG.Q.Value+D355N_600_2"/>
+            <entry key="48" type="xstring" value="PG.Q.Value+MBT_150_1"/>
+            <entry key="49" type="xstring" value="PG.Q.Value+MBT_150_2"/>
+            <entry key="50" type="xstring" value="PG.Q.Value+D355N_150_1"/>
+            <entry key="51" type="xstring" value="PG.Q.Value+D355N_150_2"/>
+            <entry key="52" type="xstring" value="PG.Q.Value+MBT_300_1"/>
+            <entry key="53" type="xstring" value="PG.Quantity+MBT_300_2"/>
+            <entry key="54" type="xstring" value="PG.Quantity+D355N_300_1"/>
+            <entry key="55" type="xstring" value="PG.Quantity+D355N_300_2"/>
+            <entry key="56" type="xstring" value="PG.Quantity+MBT_600_1"/>
+            <entry key="57" type="xstring" value="PG.Quantity+MBT_600_2"/>
+            <entry key="58" type="xstring" value="PG.Quantity+D355N_600_1"/>
+            <entry key="59" type="xstring" value="PG.Quantity+D355N_600_2"/>
+            <entry key="60" type="xstring" value="PG.Quantity+MBT_150_1"/>
+            <entry key="61" type="xstring" value="PG.Quantity+MBT_150_2"/>
+            <entry key="62" type="xstring" value="PG.Quantity+D355N_150_1"/>
+            <entry key="63" type="xstring" value="PG.Quantity+D355N_150_2"/>
+            <entry key="64" type="xstring" value="PG.Quantity+MBT_300_1"/>
+            <entry key="65" type="xstring" value="Precursor.Id+MBT_300_2"/>
+            <entry key="66" type="xstring" value="Precursor.Id+D355N_300_1"/>
+            <entry key="67" type="xstring" value="Precursor.Id+D355N_300_2"/>
+            <entry key="68" type="xstring" value="Precursor.Id+MBT_600_1"/>
+            <entry key="69" type="xstring" value="Precursor.Id+MBT_600_2"/>
+            <entry key="70" type="xstring" value="Precursor.Id+D355N_600_1"/>
+            <entry key="71" type="xstring" value="Precursor.Id+D355N_600_2"/>
+            <entry key="72" type="xstring" value="Precursor.Id+MBT_150_1"/>
+            <entry key="73" type="xstring" value="Precursor.Id+MBT_150_2"/>
+            <entry key="74" type="xstring" value="Precursor.Id+D355N_150_1"/>
+            <entry key="75" type="xstring" value="Precursor.Id+D355N_150_2"/>
+            <entry key="76" type="xstring" value="Precursor.Id+MBT_300_1"/>
+            <entry key="77" type="xstring" value="Protein.Q.Value+MBT_300_2"/>
+            <entry key="78" type="xstring" value="Protein.Q.Value+D355N_300_1"/>
+            <entry key="79" type="xstring" value="Protein.Q.Value+D355N_300_2"/>
+            <entry key="80" type="xstring" value="Protein.Q.Value+MBT_600_1"/>
+            <entry key="81" type="xstring" value="Protein.Q.Value+MBT_600_2"/>
+            <entry key="82" type="xstring" value="Protein.Q.Value+D355N_600_1"/>
+            <entry key="83" type="xstring" value="Protein.Q.Value+D355N_600_2"/>
+            <entry key="84" type="xstring" value="Protein.Q.Value+MBT_150_1"/>
+            <entry key="85" type="xstring" value="Protein.Q.Value+MBT_150_2"/>
+            <entry key="86" type="xstring" value="Protein.Q.Value+D355N_150_1"/>
+            <entry key="87" type="xstring" value="Protein.Q.Value+D355N_150_2"/>
+            <entry key="88" type="xstring" value="Protein.Q.Value+MBT_300_1"/>
+            <entry key="89" type="xstring" value="Proteotypic+MBT_300_2"/>
+            <entry key="90" type="xstring" value="Proteotypic+D355N_300_1"/>
+            <entry key="91" type="xstring" value="Proteotypic+D355N_300_2"/>
+            <entry key="92" type="xstring" value="Proteotypic+MBT_600_1"/>
+            <entry key="93" type="xstring" value="Proteotypic+MBT_600_2"/>
+            <entry key="94" type="xstring" value="Proteotypic+D355N_600_1"/>
+            <entry key="95" type="xstring" value="Proteotypic+D355N_600_2"/>
+            <entry key="96" type="xstring" value="Proteotypic+MBT_150_1"/>
+            <entry key="97" type="xstring" value="Proteotypic+MBT_150_2"/>
+            <entry key="98" type="xstring" value="Proteotypic+D355N_150_1"/>
+            <entry key="99" type="xstring" value="Proteotypic+D355N_150_2"/>
+            <entry key="100" type="xstring" value="Proteotypic+MBT_300_1"/>
+            <entry key="101" type="xstring" value="UniProt_Mass"/>
+            <entry key="102" type="xstring" value="UniProt_Length"/>
+            <entry key="103" type="xstring" value="UniProt_Sequence"/>
+            <entry key="104" type="xstring" value="UniProt_InterPro"/>
+            <entry key="105" type="xstring" value="UniProt_Pfam"/>
+            <entry key="106" type="xstring" value="UniProt_IntAct"/>
+            <entry key="107" type="xstring" value="Stripped.Sequence (Concatenate)"/>
+            <entry key="108" type="xstring" value="Stripped.Sequence (Count)"/>
+            <entry key="109" type="xstring" value="UniProt_Protein ID"/>
+            <entry key="110" type="xstring" value="UniProt_Entry Name"/>
+            <entry key="111" type="xstring" value="UniProt_Reviewed"/>
+            <entry key="112" type="xstring" value="UniProt_Gene Names (primary)"/>
+            <entry key="113" type="xstring" value="UniProt_Organism"/>
+            <entry key="114" type="xstring" value="UniProt_Gene Ontology (GO)"/>
+            <entry key="115" type="xstring" value="UniProt_Gene Ontology (biological process)"/>
+            <entry key="116" type="xstring" value="UniProt_Gene Ontology (molecular function)"/>
+            <entry key="117" type="xstring" value="UniProt_Gene Ontology (cellular component)"/>
+            <entry key="118" type="xstring" value="UniProt_Gene Ontology IDs"/>
+            <entry key="119" type="xstring" value="UniProt_Subcellular location [CC]"/>
+            <entry key="120" type="xstring" value="UniProt_Protein families"/>
+            <entry key="121" type="xstring" value="UniProt_Interacts with"/>
+            <entry key="122" type="xstring" value="PG.Quantity_sum"/>
+            <entry key="123" type="xstring" value="PG.MaxLFQ+MBT_300_2_log2"/>
+            <entry key="124" type="xstring" value="PG.MaxLFQ+D355N_300_1_log2"/>
+            <entry key="125" type="xstring" value="PG.MaxLFQ+D355N_300_2_log2"/>
+            <entry key="126" type="xstring" value="PG.MaxLFQ+MBT_600_1_log2"/>
+            <entry key="127" type="xstring" value="PG.MaxLFQ+MBT_600_2_log2"/>
+            <entry key="128" type="xstring" value="PG.MaxLFQ+D355N_600_1_log2"/>
+            <entry key="129" type="xstring" value="PG.MaxLFQ+D355N_600_2_log2"/>
+            <entry key="130" type="xstring" value="PG.MaxLFQ+MBT_150_1_log2"/>
+            <entry key="131" type="xstring" value="PG.MaxLFQ+MBT_150_2_log2"/>
+            <entry key="132" type="xstring" value="PG.MaxLFQ+D355N_150_1_log2"/>
+            <entry key="133" type="xstring" value="PG.MaxLFQ+D355N_150_2_log2"/>
+            <entry key="134" type="xstring" value="PG.MaxLFQ+MBT_300_1_log2"/>
+            <entry key="135" type="xstring" value="PG.Prec.Norm.Sum+MBT_300_2_log2"/>
+            <entry key="136" type="xstring" value="PG.Prec.Norm.Sum+D355N_300_1_log2"/>
+            <entry key="137" type="xstring" value="PG.Prec.Norm.Sum+D355N_300_2_log2"/>
+            <entry key="138" type="xstring" value="PG.Prec.Norm.Sum+MBT_600_1_log2"/>
+            <entry key="139" type="xstring" value="PG.Prec.Norm.Sum+MBT_600_2_log2"/>
+            <entry key="140" type="xstring" value="PG.Prec.Norm.Sum+D355N_600_1_log2"/>
+            <entry key="141" type="xstring" value="PG.Prec.Norm.Sum+D355N_600_2_log2"/>
+            <entry key="142" type="xstring" value="PG.Prec.Norm.Sum+MBT_150_1_log2"/>
+            <entry key="143" type="xstring" value="PG.Prec.Norm.Sum+MBT_150_2_log2"/>
+            <entry key="144" type="xstring" value="PG.Prec.Norm.Sum+D355N_150_1_log2"/>
+            <entry key="145" type="xstring" value="PG.Prec.Norm.Sum+D355N_150_2_log2"/>
+            <entry key="146" type="xstring" value="PG.Prec.Norm.Sum+MBT_300_1_log2"/>
+            <entry key="147" type="xstring" value="PG.Q.Value+MBT_300_2_log2"/>
+            <entry key="148" type="xstring" value="PG.Q.Value+D355N_300_1_log2"/>
+            <entry key="149" type="xstring" value="PG.Q.Value+D355N_300_2_log2"/>
+            <entry key="150" type="xstring" value="PG.Q.Value+MBT_600_1_log2"/>
+            <entry key="151" type="xstring" value="PG.Q.Value+MBT_600_2_log2"/>
+            <entry key="152" type="xstring" value="PG.Q.Value+D355N_600_1_log2"/>
+            <entry key="153" type="xstring" value="PG.Q.Value+D355N_600_2_log2"/>
+            <entry key="154" type="xstring" value="PG.Q.Value+MBT_150_1_log2"/>
+            <entry key="155" type="xstring" value="PG.Q.Value+MBT_150_2_log2"/>
+            <entry key="156" type="xstring" value="PG.Q.Value+D355N_150_1_log2"/>
+            <entry key="157" type="xstring" value="PG.Q.Value+D355N_150_2_log2"/>
+            <entry key="158" type="xstring" value="PG.Q.Value+MBT_300_1_log2"/>
+            <entry key="159" type="xstring" value="PG.Quantity+MBT_300_2_log2"/>
+            <entry key="160" type="xstring" value="PG.Quantity+D355N_300_1_log2"/>
+            <entry key="161" type="xstring" value="PG.Quantity+D355N_300_2_log2"/>
+            <entry key="162" type="xstring" value="PG.Quantity+MBT_600_1_log2"/>
+            <entry key="163" type="xstring" value="PG.Quantity+MBT_600_2_log2"/>
+            <entry key="164" type="xstring" value="PG.Quantity+D355N_600_1_log2"/>
+            <entry key="165" type="xstring" value="PG.Quantity+D355N_600_2_log2"/>
+            <entry key="166" type="xstring" value="PG.Quantity+MBT_150_1_log2"/>
+            <entry key="167" type="xstring" value="PG.Quantity+MBT_150_2_log2"/>
+            <entry key="168" type="xstring" value="PG.Quantity+D355N_150_1_log2"/>
+            <entry key="169" type="xstring" value="PG.Quantity+D355N_150_2_log2"/>
+            <entry key="170" type="xstring" value="PG.Quantity+MBT_300_1_log2"/>
+            <entry key="171" type="xstring" value="PG.Quantity_sum_log2"/>
+            <entry key="172" type="xstring" value="Proteotypic_max"/>
+            <entry key="173" type="xstring" value="PG.Normalised+MBT_300_2_log2"/>
+            <entry key="174" type="xstring" value="PG.Normalised+D355N_300_1_log2"/>
+            <entry key="175" type="xstring" value="PG.Normalised+D355N_300_2_log2"/>
+            <entry key="176" type="xstring" value="PG.Normalised+MBT_600_1_log2"/>
+            <entry key="177" type="xstring" value="PG.Normalised+MBT_600_2_log2"/>
+            <entry key="178" type="xstring" value="PG.Normalised+D355N_600_1_log2"/>
+            <entry key="179" type="xstring" value="PG.Normalised+D355N_600_2_log2"/>
+            <entry key="180" type="xstring" value="PG.Normalised+MBT_150_1_log2"/>
+            <entry key="181" type="xstring" value="PG.Normalised+MBT_150_2_log2"/>
+            <entry key="182" type="xstring" value="PG.Normalised+D355N_150_1_log2"/>
+            <entry key="183" type="xstring" value="PG.Normalised+D355N_150_2_log2"/>
+            <entry key="184" type="xstring" value="PG.Normalised+MBT_300_1_log2"/>
+            <entry key="185" type="xstring" value="PG.MaxLFQ+MBT_300_2_log2_bin"/>
+            <entry key="186" type="xstring" value="PG.MaxLFQ+D355N_300_1_log2_bin"/>
+            <entry key="187" type="xstring" value="PG.MaxLFQ+D355N_300_2_log2_bin"/>
+            <entry key="188" type="xstring" value="PG.MaxLFQ+MBT_600_1_log2_bin"/>
+            <entry key="189" type="xstring" value="PG.MaxLFQ+MBT_600_2_log2_bin"/>
+            <entry key="190" type="xstring" value="PG.MaxLFQ+D355N_600_1_log2_bin"/>
+            <entry key="191" type="xstring" value="PG.MaxLFQ+D355N_600_2_log2_bin"/>
+            <entry key="192" type="xstring" value="PG.MaxLFQ+MBT_150_1_log2_bin"/>
+            <entry key="193" type="xstring" value="PG.MaxLFQ+MBT_150_2_log2_bin"/>
+            <entry key="194" type="xstring" value="PG.MaxLFQ+D355N_150_1_log2_bin"/>
+            <entry key="195" type="xstring" value="PG.MaxLFQ+D355N_150_2_log2_bin"/>
+            <entry key="196" type="xstring" value="PG.MaxLFQ+MBT_300_1_log2_bin"/>
+            <entry key="197" type="xstring" value="PG.MaxLFQ_all_log2_bin_sum"/>
+            <entry key="198" type="xstring" value="PG.MaxLFQ_D355N_150_log2_bin_sum"/>
+            <entry key="199" type="xstring" value="PG.MaxLFQ_D355N_300_log2_bin_sum"/>
+            <entry key="200" type="xstring" value="PG.MaxLFQ_D355N_600_log2_bin_sum"/>
+            <entry key="201" type="xstring" value="PG.MaxLFQ_MBT_150_log2_bin_sum"/>
+            <entry key="202" type="xstring" value="PG.MaxLFQ_MBT_300_log2_bin_sum"/>
+            <entry key="203" type="xstring" value="PG.MaxLFQ_MBT_600_log2_bin_sum"/>
+            <entry key="204" type="xstring" value="LIMMA_DIA_s300-s150.logFC"/>
+            <entry key="205" type="xstring" value="LIMMA_DIA_s300-s150.AveExpr"/>
+            <entry key="206" type="xstring" value="LIMMA_DIA_s300-s150.t"/>
+            <entry key="207" type="xstring" value="LIMMA_DIA_s300-s150.P.Value"/>
+            <entry key="208" type="xstring" value="LIMMA_DIA_s300-s150.adj.P.Val"/>
+            <entry key="209" type="xstring" value="LIMMA_DIA_s300-s150.B"/>
+            <entry key="210" type="xstring" value="PG.MaxLFQ+s150_median"/>
+            <entry key="211" type="xstring" value="PG.MaxLFQ+s300_median"/>
+            <entry key="212" type="xstring" value="s300/s150_ratio"/>
+            <entry key="213" type="xstring" value="s300/s150_ratio_all"/>
+        </config>
+        <entry key="type" type="xstring" value="Dropdown"/>
+        <entry key="limit_number_visible_options" type="xboolean" value="false"/>
+        <entry key="number_visible_options" type="xint" value="10"/>
+        <config key="input_filter">
+            <config key="type_filter">
+                <entry key="org.knime.core.data.DoubleValue" type="xboolean" value="false"/>
+                <entry key="org.knime.core.data.StringValue" type="xboolean" value="false"/>
+                <entry key="org.knime.core.data.IntValue" type="xboolean" value="false"/>
+                <entry key="org.knime.core.data.BooleanValue" type="xboolean" value="false"/>
+                <entry key="org.knime.core.data.LongValue" type="xboolean" value="false"/>
+                <entry key="org.knime.core.data.time.localdatetime.LocalDateTimeValue" type="xboolean" value="false"/>
+            </config>
+            <entry key="allow_all_types" type="xboolean" value="true"/>
+            <entry key="filter_columns_without_domain" type="xboolean" value="false"/>
+        </config>
+    </config>
+    <config key="nodeAnnotation">
+        <entry key="text" type="xstring" value="ratio column%%00010selection"/>
+        <entry key="bgcolor" type="xint" value="16777215"/>
+        <entry key="x-coordinate" type="xint" value="170"/>
+        <entry key="y-coordinate" type="xint" value="959"/>
+        <entry key="width" type="xint" value="142"/>
+        <entry key="height" type="xint" value="32"/>
+        <entry key="alignment" type="xstring" value="CENTER"/>
+        <entry key="borderSize" type="xint" value="0"/>
+        <entry key="borderColor" type="xint" value="16777215"/>
+        <entry key="defFontSize" type="xint" value="10"/>
+        <entry key="annotation-version" type="xint" value="20151123"/>
+        <config key="styles">
+            <config key="style_0">
+                <entry key="start" type="xint" value="0"/>
+                <entry key="length" type="xint" value="22"/>
+                <entry key="fontname" type="xstring" value="Sans"/>
+                <entry key="fontstyle" type="xint" value="0"/>
+                <entry key="fontsize" type="xint" value="10"/>
+                <entry key="fgcolor" type="xint" value="0"/>
+            </config>
+        </config>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.selection.column.ColumnSelectionDialogNodeFactory2"/>
+    <entry key="node-name" type="xstring" value="Column Selection Configuration"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Column Selection Configuration"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#346)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#1548)/settings.xml
similarity index 97%
rename from Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#346)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#1548)/settings.xml
index ffec1f09c..754f6119d 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#346)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#1548)/settings.xml	
@@ -140,7 +140,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="annotation column%%00010selection"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="169"/>
+        <entry key="x-coordinate" type="xint" value="170"/>
         <entry key="y-coordinate" type="xint" value="819"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -161,17 +161,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.selection.column.ColumnSelectionDialogNodeFactory2"/>
     <entry key="node-name" type="xstring" value="Column Selection Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Selection Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#334)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#334)/settings.xml
index 0167f4553..17286c834 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#334)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#334)/settings.xml	
@@ -152,17 +152,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.selection.column.ColumnSelectionDialogNodeFactory2"/>
     <entry key="node-name" type="xstring" value="Column Selection Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Selection Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#335)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#335)/settings.xml
index 99b8c30af..804a04281 100644
--- a/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#335)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Column Selection Configuration (#335)/settings.xml	
@@ -161,17 +161,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.selection.column.ColumnSelectionDialogNodeFactory2"/>
     <entry key="node-name" type="xstring" value="Column Selection Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Column Selection Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml
index bf9c34b25..1e6ff8ccb 100644
--- a/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml	
@@ -31,25 +31,21 @@
             <entry key="array-size" type="xint" value="1"/>
             <entry key="0" type="xstring" value="Input table containing columns to be selected for visualization"/>
         </config>
-        <entry key="sub-node-description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value.%%00010%%00010Ratios/fold changes should be provided in log transformed format (logFC) together with the logFC limit for values categorization, visualization and summary.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.6 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 3.6 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.6.3 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.6.3a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.5 from 2023-02-22%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
+        <entry key="sub-node-description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.6 from 2023-12-04%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
     </config>
     <entry key="customDescription" type="xstring" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
-    <config key="nodecontainer_message">
-        <entry key="type" type="xstring" value="WARNING"/>
-        <entry key="message" type="xstring" value="Component does not have input data, execute upstream nodes first"/>
-    </config>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="isDeletable" type="xboolean" value="false"/>
     <entry key="factory" type="xstring" value="org.knime.core.node.workflow.virtual.subnode.VirtualSubNodeInputNodeFactory"/>
     <entry key="node-name" type="xstring" value="Component Input"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Core API"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.core"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.3.v202209271016"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308161346"/>
     <entry key="node-feature-name" type="xstring" value="KNIME AP Core feature"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.core.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.3.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings">
         <config key="port_0">
             <entry key="index" type="xint" value="0"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Component Output (#219)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Component Output (#219)/settings.xml
index 9f6ab44e9..ce8b3aeb8 100644
--- a/Metanodes templates/Graphs/Volcano plot/Component Output (#219)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Component Output (#219)/settings.xml	
@@ -39,11 +39,11 @@
     <entry key="node-bundle-name" type="xstring" value="KNIME Core API"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.core"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.3.v202209271016"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308161346"/>
     <entry key="node-feature-name" type="xstring" value="KNIME AP Core feature"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.core.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.3.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
     <config key="factory_settings">
         <config key="port_0">
             <entry key="index" type="xint" value="0"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Double Configuration (#338)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Double Configuration (#1540)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/Double Configuration (#338)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Double Configuration (#1540)/settings.xml
index 60a57566d..6f7577fe1 100644
--- a/Metanodes templates/Graphs/Volcano plot/Double Configuration (#338)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Double Configuration (#1540)/settings.xml	
@@ -23,7 +23,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="x axis (logFC)%%00010threshold"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="349"/>
+        <entry key="x-coordinate" type="xint" value="510"/>
         <entry key="y-coordinate" type="xint" value="-41"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -44,17 +44,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.dbl.DoubleDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Double Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Double Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Double Configuration (#339)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Double Configuration (#1541)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/Double Configuration (#339)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Double Configuration (#1541)/settings.xml
index 97355af61..26c6ea813 100644
--- a/Metanodes templates/Graphs/Volcano plot/Double Configuration (#339)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Double Configuration (#1541)/settings.xml	
@@ -23,7 +23,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="y axis (p)%%00010threshold"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="509"/>
+        <entry key="x-coordinate" type="xint" value="670"/>
         <entry key="y-coordinate" type="xint" value="-41"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -44,17 +44,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.dbl.DoubleDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Double Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Double Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Double Configuration (#337)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Double Configuration (#337)/settings.xml
index 50c1b3fc9..acad13da3 100644
--- a/Metanodes templates/Graphs/Volcano plot/Double Configuration (#337)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Double Configuration (#337)/settings.xml	
@@ -35,17 +35,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.dbl.DoubleDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Double Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Double Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/End IF (#1537)/settings.xml b/Metanodes templates/Graphs/Volcano plot/End IF (#1537)/settings.xml
new file mode 100644
index 000000000..03e5a61ac
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/End IF (#1537)/settings.xml	
@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <entry key="append_suffix" type="xboolean" value="true"/>
+        <entry key="suffix" type="xstring" value="_dup"/>
+        <entry key="enable_hiliting" type="xboolean" value="false"/>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.base.node.switches.endif.EndifNodeFactory"/>
+    <entry key="node-name" type="xstring" value="End IF"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="End IF"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/IF Switch (#1536)/settings.xml b/Metanodes templates/Graphs/Volcano plot/IF Switch (#1536)/settings.xml
new file mode 100644
index 000000000..13ef4bcfe
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/IF Switch (#1536)/settings.xml	
@@ -0,0 +1,59 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="PortChoice_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="PortChoice" type="xstring" value="both"/>
+        <config key="activate_all_outputs_during_configure_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="activate_all_outputs_during_configure" type="xboolean" value="true"/>
+    </config>
+    <config key="variables">
+        <entry key="version" type="xstring" value="V_2019_09_13"/>
+        <config key="tree">
+            <config key="PortChoice">
+                <entry key="used_variable" type="xstring" value="qual_switch"/>
+                <entry key="exposed_variable" type="xstring" isnull="true" value=""/>
+            </config>
+        </config>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.base.node.switches.manualif.ManualIfNodeFactory"/>
+    <entry key="node-name" type="xstring" value="IF Switch"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="IF Switch"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+        <config key="port_2">
+            <entry key="index" type="xint" value="2"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Integer Configuration (#373)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Integer Configuration (#1557)/settings.xml
similarity index 92%
rename from Metanodes templates/Graphs/Volcano plot/Integer Configuration (#373)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Integer Configuration (#1557)/settings.xml
index ecc563a59..dbe4a2a24 100644
--- a/Metanodes templates/Graphs/Volcano plot/Integer Configuration (#373)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Integer Configuration (#1557)/settings.xml	
@@ -23,7 +23,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="top N"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="809"/>
+        <entry key="x-coordinate" type="xint" value="829"/>
         <entry key="y-coordinate" type="xint" value="119"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -35,17 +35,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.integer.IntegerDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Integer Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Integer Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Integer Configuration (#1559)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Integer Configuration (#1559)/settings.xml
new file mode 100644
index 000000000..172812fa6
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Integer Configuration (#1559)/settings.xml	
@@ -0,0 +1,63 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="defaultValue">
+            <entry key="integer" type="xint" value="0"/>
+        </config>
+        <entry key="hideInDialog" type="xboolean" value="false"/>
+        <entry key="parameterName" type="xstring" value="top_n_qual"/>
+        <entry key="label" type="xstring" value="Label only top N points with qualitative changes"/>
+        <entry key="description" type="xstring" value="If qualitative changes are also to be displayed, provide the number of top N qualitatively changed points which will be labelled. If left at 0, no labelling will be performed"/>
+        <entry key="required" type="xboolean" value="true"/>
+        <entry key="flowVariableName" type="xstring" value="top_n_qual"/>
+        <entry key="useMin" type="xboolean" value="true"/>
+        <entry key="useMax" type="xboolean" value="false"/>
+        <entry key="min" type="xint" value="0"/>
+        <entry key="max" type="xint" value="100"/>
+    </config>
+    <config key="nodeAnnotation">
+        <entry key="text" type="xstring" value="top N,%%00010qual."/>
+        <entry key="bgcolor" type="xint" value="16777215"/>
+        <entry key="x-coordinate" type="xint" value="9"/>
+        <entry key="y-coordinate" type="xint" value="279"/>
+        <entry key="width" type="xint" value="142"/>
+        <entry key="height" type="xint" value="32"/>
+        <entry key="alignment" type="xstring" value="CENTER"/>
+        <entry key="borderSize" type="xint" value="0"/>
+        <entry key="borderColor" type="xint" value="16777215"/>
+        <entry key="defFontSize" type="xint" value="10"/>
+        <entry key="annotation-version" type="xint" value="20151123"/>
+        <config key="styles"/>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.integer.IntegerDialogNodeFactory"/>
+    <entry key="node-name" type="xstring" value="Integer Configuration"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Integer Configuration"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Joiner (#1532)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Joiner (#1532)/settings.xml
new file mode 100644
index 000000000..4d85887ed
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Joiner (#1532)/settings.xml	
@@ -0,0 +1,186 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="includeMatchesInOutput_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="includeMatchesInOutput" type="xboolean" value="true"/>
+        <config key="includeLeftUnmatchedInOutput_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="includeLeftUnmatchedInOutput" type="xboolean" value="false"/>
+        <config key="includeRightUnmatchedInOutput_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="includeRightUnmatchedInOutput" type="xboolean" value="false"/>
+        <config key="leftTableJoinPredicate_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_stringarray"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <config key="leftTableJoinPredicate">
+            <entry key="array-size" type="xint" value="1"/>
+            <entry key="0" type="xstring" value="$RowID$"/>
+        </config>
+        <config key="rightTableJoinPredicate_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_stringarray"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <config key="rightTableJoinPredicate">
+            <entry key="array-size" type="xint" value="1"/>
+            <entry key="0" type="xstring" value="$RowID$"/>
+        </config>
+        <config key="compositionMode_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="compositionMode" type="xstring" value="MATCH_ALL"/>
+        <config key="mergeJoinColumns_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="mergeJoinColumns" type="xboolean" value="false"/>
+        <config key="dataCellComparisonMode_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="dataCellComparisonMode" type="xstring" value="STRICT"/>
+        <config key="outputUnmatchedRowsToSeparatePorts_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="outputUnmatchedRowsToSeparatePorts" type="xboolean" value="false"/>
+        <config key="rowKeyFactory_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="rowKeyFactory" type="xstring" value="KEEP_ROWID"/>
+        <config key="rowKeySeparator_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="false"/>
+        </config>
+        <entry key="rowKeySeparator" type="xstring" value="_"/>
+        <config key="duplicateHandling_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="duplicateHandling" type="xstring" value="APPEND_SUFFIX"/>
+        <config key="suffix_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="suffix" type="xstring" value=" (right)"/>
+        <config key="outputRowOrder_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="outputRowOrder" type="xstring" value="ARBITRARY"/>
+        <config key="maxOpenFiles_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_integer"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="maxOpenFiles" type="xint" value="200"/>
+        <config key="enableHiliting_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="enableHiliting" type="xboolean" value="false"/>
+        <config key="leftColumnSelectionConfig">
+            <entry key="filter-type" type="xstring" value="STANDARD"/>
+            <config key="included_names">
+                <entry key="array-size" type="xint" value="0"/>
+            </config>
+            <config key="excluded_names">
+                <entry key="array-size" type="xint" value="3"/>
+                <entry key="0" type="xstring" value="logFC"/>
+                <entry key="1" type="xstring" value="p"/>
+                <entry key="2" type="xstring" value="ID"/>
+            </config>
+            <entry key="enforce_option" type="xstring" value="EnforceInclusion"/>
+            <config key="name_pattern">
+                <entry key="pattern" type="xstring" value=""/>
+                <entry key="type" type="xstring" value="Wildcard"/>
+                <entry key="caseSensitive" type="xboolean" value="true"/>
+                <entry key="excludeMatching" type="xboolean" value="false"/>
+            </config>
+            <config key="datatype">
+                <config key="typelist">
+                    <entry key="org.knime.core.data.DoubleValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.StringValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.BooleanValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.IntValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.LongValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.date.DateAndTimeValue" type="xboolean" value="false"/>
+                </config>
+            </config>
+        </config>
+        <config key="rightColumnSelectionConfig">
+            <entry key="filter-type" type="xstring" value="STANDARD"/>
+            <config key="included_names">
+                <entry key="array-size" type="xint" value="1"/>
+                <entry key="0" type="xstring" value="Ratio"/>
+            </config>
+            <config key="excluded_names">
+                <entry key="array-size" type="xint" value="0"/>
+            </config>
+            <entry key="enforce_option" type="xstring" value="EnforceExclusion"/>
+            <config key="name_pattern">
+                <entry key="pattern" type="xstring" value=""/>
+                <entry key="type" type="xstring" value="Wildcard"/>
+                <entry key="caseSensitive" type="xboolean" value="true"/>
+                <entry key="excludeMatching" type="xboolean" value="false"/>
+            </config>
+            <config key="datatype">
+                <config key="typelist">
+                    <entry key="org.knime.core.data.DoubleValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.BooleanValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.IntValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.LongValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.StringValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.date.DateAndTimeValue" type="xboolean" value="false"/>
+                </config>
+            </config>
+        </config>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.base.node.preproc.joiner3.Joiner3NodeFactory"/>
+    <entry key="node-name" type="xstring" value="Joiner"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Joiner"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+        <config key="port_2">
+            <entry key="index" type="xint" value="2"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+        <config key="port_3">
+            <entry key="index" type="xint" value="3"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Joiner (#1534)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Joiner (#1534)/settings.xml
new file mode 100644
index 000000000..9d21dcea3
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Joiner (#1534)/settings.xml	
@@ -0,0 +1,186 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="includeMatchesInOutput_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="includeMatchesInOutput" type="xboolean" value="true"/>
+        <config key="includeLeftUnmatchedInOutput_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="includeLeftUnmatchedInOutput" type="xboolean" value="true"/>
+        <config key="includeRightUnmatchedInOutput_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="includeRightUnmatchedInOutput" type="xboolean" value="true"/>
+        <config key="leftTableJoinPredicate_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_stringarray"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <config key="leftTableJoinPredicate">
+            <entry key="array-size" type="xint" value="1"/>
+            <entry key="0" type="xstring" value="$RowID$"/>
+        </config>
+        <config key="rightTableJoinPredicate_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_stringarray"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <config key="rightTableJoinPredicate">
+            <entry key="array-size" type="xint" value="1"/>
+            <entry key="0" type="xstring" value="$RowID$"/>
+        </config>
+        <config key="compositionMode_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="compositionMode" type="xstring" value="MATCH_ALL"/>
+        <config key="mergeJoinColumns_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="mergeJoinColumns" type="xboolean" value="false"/>
+        <config key="dataCellComparisonMode_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="dataCellComparisonMode" type="xstring" value="STRICT"/>
+        <config key="outputUnmatchedRowsToSeparatePorts_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="outputUnmatchedRowsToSeparatePorts" type="xboolean" value="false"/>
+        <config key="rowKeyFactory_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="rowKeyFactory" type="xstring" value="SEQUENTIAL"/>
+        <config key="rowKeySeparator_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="false"/>
+        </config>
+        <entry key="rowKeySeparator" type="xstring" value="_"/>
+        <config key="duplicateHandling_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="duplicateHandling" type="xstring" value="APPEND_SUFFIX"/>
+        <config key="suffix_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="suffix" type="xstring" value=" (right)"/>
+        <config key="outputRowOrder_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_string"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="outputRowOrder" type="xstring" value="ARBITRARY"/>
+        <config key="maxOpenFiles_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_integer"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="maxOpenFiles" type="xint" value="200"/>
+        <config key="enableHiliting_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="enableHiliting" type="xboolean" value="false"/>
+        <config key="leftColumnSelectionConfig">
+            <entry key="filter-type" type="xstring" value="STANDARD"/>
+            <config key="included_names">
+                <entry key="array-size" type="xint" value="3"/>
+                <entry key="0" type="xstring" value="logFC"/>
+                <entry key="1" type="xstring" value="p"/>
+                <entry key="2" type="xstring" value="ID"/>
+            </config>
+            <config key="excluded_names">
+                <entry key="array-size" type="xint" value="0"/>
+            </config>
+            <entry key="enforce_option" type="xstring" value="EnforceExclusion"/>
+            <config key="name_pattern">
+                <entry key="pattern" type="xstring" value=""/>
+                <entry key="type" type="xstring" value="Wildcard"/>
+                <entry key="caseSensitive" type="xboolean" value="true"/>
+                <entry key="excludeMatching" type="xboolean" value="false"/>
+            </config>
+            <config key="datatype">
+                <config key="typelist">
+                    <entry key="org.knime.core.data.DoubleValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.StringValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.BooleanValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.IntValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.LongValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.date.DateAndTimeValue" type="xboolean" value="false"/>
+                </config>
+            </config>
+        </config>
+        <config key="rightColumnSelectionConfig">
+            <entry key="filter-type" type="xstring" value="STANDARD"/>
+            <config key="included_names">
+                <entry key="array-size" type="xint" value="1"/>
+                <entry key="0" type="xstring" value="Ratio"/>
+            </config>
+            <config key="excluded_names">
+                <entry key="array-size" type="xint" value="0"/>
+            </config>
+            <entry key="enforce_option" type="xstring" value="EnforceExclusion"/>
+            <config key="name_pattern">
+                <entry key="pattern" type="xstring" value=""/>
+                <entry key="type" type="xstring" value="Wildcard"/>
+                <entry key="caseSensitive" type="xboolean" value="true"/>
+                <entry key="excludeMatching" type="xboolean" value="false"/>
+            </config>
+            <config key="datatype">
+                <config key="typelist">
+                    <entry key="org.knime.core.data.DoubleValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.BooleanValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.IntValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.LongValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.StringValue" type="xboolean" value="false"/>
+                    <entry key="org.knime.core.data.date.DateAndTimeValue" type="xboolean" value="false"/>
+                </config>
+            </config>
+        </config>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.base.node.preproc.joiner3.Joiner3NodeFactory"/>
+    <entry key="node-name" type="xstring" value="Joiner"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Joiner"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+        <config key="port_2">
+            <entry key="index" type="xint" value="2"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+        <config key="port_3">
+            <entry key="index" type="xint" value="3"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Python Edit Variable (#348)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Python Edit Variable _legacy_ (#348)/settings.xml
similarity index 87%
rename from Metanodes templates/Graphs/Volcano plot/Python Edit Variable (#348)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Python Edit Variable _legacy_ (#348)/settings.xml
index 1c7fa813c..a39ec232c 100644
--- a/Metanodes templates/Graphs/Volcano plot/Python Edit Variable (#348)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Python Edit Variable _legacy_ (#348)/settings.xml	
@@ -6,7 +6,7 @@
         <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
     </config>
     <config key="model">
-        <entry key="sourceCode" type="xstring" value="# modify subtitle variable%%00010thresholds = 'Visualization thresholds: logFC ' + str(flow_variables['logFC_threshold']) + ', P ' + str(flow_variables['p_threshold'])%%00010%%00010if flow_variables['subtitle'].strip() != '':%%00010%%00009flow_variables['full_subtitle'] = flow_variables['subtitle'] + '\n' + thresholds%%00010else:%%00010%%00009flow_variables['full_subtitle'] = thresholds%%00010%%00010# plot size%%00010if flow_variables['plot_size'] == '':%%00010%%00009flow_variables['plot_width'] = 600%%00010%%00009flow_variables['plot_height'] = 600%%00010else:%%00010%%00009flow_variables['plot_width'], flow_variables['plot_height'] = flow_variables['plot_size'].split(';')%%00010%%00009flow_variables['plot_width'] = int(flow_variables['plot_width'].strip())%%00010%%00009flow_variables['plot_height'] = int(flow_variables['plot_height'].strip())%%00010%%00010# modify title variable%%00010if flow_variables['plot_width'] &lt; 400:%%00010%%00009flow_variables['title'] = 'Volcano plot\nwith selected categories'%%00010else:%%00010%%00009flow_variables['title'] = 'Volcano plot with selected categories'"/>
+        <entry key="sourceCode" type="xstring" value="# modify subtitle variable%%00010thresholds = 'Visualization thresholds: logFC ' + str(flow_variables['logFC_threshold']) + ', P ' + str(flow_variables['p_threshold'])%%00010%%00010if flow_variables['subtitle'].strip() != '':%%00010%%00009flow_variables['full_subtitle'] = flow_variables['subtitle'] + '\n' + thresholds%%00010else:%%00010%%00009flow_variables['full_subtitle'] = thresholds%%00010%%00010# plot size%%00010if flow_variables['plot_size'] == '':%%00010%%00009flow_variables['plot_width'] = 800%%00010%%00009flow_variables['plot_height'] = 900%%00010else:%%00010%%00009flow_variables['plot_width'], flow_variables['plot_height'] = flow_variables['plot_size'].split(';')%%00010%%00009flow_variables['plot_width'] = int(flow_variables['plot_width'].strip())%%00010%%00009flow_variables['plot_height'] = int(flow_variables['plot_height'].strip())%%00010%%00010# modify title variable%%00010if flow_variables['plot_width'] &lt; 400:%%00010%%00009flow_variables['title'] = 'Volcano plot\nwith selected categories'%%00010else:%%00010%%00009flow_variables['title'] = 'Volcano plot with selected categories'%%00010%%00010# qualitative variable changes%%00010if flow_variables['qual_bool'] == 0:%%00010%%00009flow_variables['qual_switch'] = 'top'%%00010else:%%00010%%00009flow_variables['qual_switch'] = 'bottom'"/>
         <entry key="rowLimit" type="xint" value="1000"/>
         <entry key="convertMissingToPython" type="xboolean" value="false"/>
         <entry key="convertMissingFromPython" type="xboolean" value="false"/>
@@ -29,7 +29,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="edit variables"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="949"/>
+        <entry key="x-coordinate" type="xint" value="1150"/>
         <entry key="y-coordinate" type="xint" value="279"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -41,19 +41,19 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.python2.nodes.variables.Python2VariablesNodeFactory"/>
-    <entry key="node-name" type="xstring" value="Python Edit Variable"/>
+    <entry key="node-name" type="xstring" value="Python Edit Variable (legacy)"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Python nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.python2.nodes"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202206032030"/>
-    <entry key="node-feature-name" type="xstring" value="KNIME Python Integration"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202211291448"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Python 2 Integration (legacy)"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.python2.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202206100850"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.1.v202301311311"/>
     <config key="factory_settings"/>
-    <entry key="name" type="xstring" value="Python Edit Variable"/>
+    <entry key="name" type="xstring" value="Python Edit Variable (legacy)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
     <entry key="isInactive" type="xboolean" value="false"/>
     <config key="ports">
diff --git a/Metanodes templates/Graphs/Volcano plot/R Snippet (#1528)/settings.xml b/Metanodes templates/Graphs/Volcano plot/R Snippet (#1528)/settings.xml
index b27891196..22f326e10 100644
--- a/Metanodes templates/Graphs/Volcano plot/R Snippet (#1528)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/R Snippet (#1528)/settings.xml	
@@ -33,7 +33,7 @@
         <entry key="x-coordinate" type="xint" value="830"/>
         <entry key="y-coordinate" type="xint" value="819"/>
         <entry key="width" type="xint" value="142"/>
-        <entry key="height" type="xint" value="51"/>
+        <entry key="height" type="xint" value="48"/>
         <entry key="alignment" type="xstring" value="CENTER"/>
         <entry key="borderSize" type="xint" value="0"/>
         <entry key="borderColor" type="xint" value="16777215"/>
@@ -42,17 +42,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.r.RSnippetNodeFactory"/>
     <entry key="node-name" type="xstring" value="R Snippet"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME R-Project nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.r"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202205161326"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202206271529"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Interactive R Statistics Integration"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.r.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202205161326"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.0.v202211090002"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="R Snippet"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml b/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml
index 0431b2080..35bea5e1e 100644
--- a/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml	
@@ -12,7 +12,7 @@
         <entry key="Image background color" type="xstring" value="#ffffff"/>
         <entry key="Text point size" type="xint" value="12"/>
         <config key="R settings">
-            <entry key="script" type="xstring" value="# load required libraries%%00010library(ggplot2)%%00010library(dplyr)%%00010library(magrittr)%%00010library(ggrepel)%%00010%%00010# categories for individual points in the scatter plot%%00010category_significant = 'Significant'%%00010category_significant_up = 'Up&amp;Sign.'%%00010category_significant_down = 'Down&amp;Sign.'%%00010category_notsignificant = 'Not sign.'%%00010%%00010# load table and perform -log10 transformation%%00010df &lt;- knime.in%%00010%%00010if(knime.flow.in[[&quot;zero_p_replacement&quot;]] != 0){%%00010%%00009zero_index &lt;- which(df$p == 0)%%00010%%00009df$p[zero_index] &lt;- knime.flow.in[[&quot;zero_p_replacement&quot;]]%%00010}%%00010%%00010df &lt;- na.omit(df)%%00010%%00010if(knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009df &lt;- df %&gt;%%%00010%%00009%%00009mutate(p = -log10(p))%%00010}%%00010%%00010p_threshold &lt;- -log10(knime.flow.in[[&quot;p_threshold&quot;]])%%00010logFC_threshold &lt;- knime.flow.in[[&quot;logFC_threshold&quot;]]%%00010%%00010# add column containing info about expression change%%00010df &lt;- df %&gt;%%%00010%%00009mutate(change = case_when(p &gt; p_threshold &amp; logFC &gt; logFC_threshold ~ category_significant_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; -logFC_threshold ~ category_significant_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; logFC_threshold &amp; logFC &gt; -logFC_threshold ~ category_significant,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 TRUE ~ category_notsignificant))%%00010%%00010# get number of proteins in each category%%00010df_summary &lt;- df %&gt;%%%00010%%00009group_by(change) %&gt;%%%00010%%00009summarize(n = n()) %&gt;%%%00010%%00009as.data.frame()%%00010%%00010all_changes &lt;- c(category_significant_up, category_significant_down, category_significant, category_notsignificant)%%00010observed_changes &lt;- df_summary$change%%00010not_observed_changes &lt;- setdiff(all_changes, observed_changes)%%00010%%00010if(length(not_observed_changes) &gt; 0){%%00010%%00009df_summary_append &lt;- data.frame(change = not_observed_changes,%%00010%%00009%%00009%%00009%%00009%%00009%%00009%%00009  n = rep(0, times = length(not_observed_changes)))%%00010%%00009df_summary &lt;- rbind(df_summary, df_summary_append)%%00010}%%00010%%00010# add number of observed values in each category to the dataframe%%00010df &lt;- df %&gt;%%%00010%%00009mutate(count = case_when(change == category_significant_up ~ df_summary$n[which(df_summary$change == category_significant_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant_down ~ df_summary$n[which(df_summary$change == category_significant_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant ~ df_summary$n[which(df_summary$change == category_significant)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009TRUE ~ df_summary$n[which(df_summary$change == category_notsignificant)])) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, count, &quot;)&quot;),%%00010%%00009%%00009  color = case_when(change == category_significant_up ~ &quot;olivedrab3&quot;,%%00010%%00009%%00009                    change == category_significant_down ~ &quot;firebrick2&quot;,%%00010%%00009%%00009                    change == category_significant ~ &quot;goldenrod2&quot;,%%00010%%00009%%00009                    TRUE ~ &quot;grey40&quot;))%%00010%%00009%%00009                    %%00010if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 0){%%00010%%00009df$sorting &lt;- abs(df$logFC)%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 1){%%00010%%00009df$sorting &lt;- df$p%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 2){%%00010%%00009df$sorting &lt;- df$p*abs(df$logFC)%%00010}%%00010%%00009%%00009                    %%00010df &lt;- df %&gt;%%%00010%%00009arrange(desc(sorting))%%00009   %%00010%%00010# create values for plot legend%%00010df$change &lt;- factor(df$change, levels = c(category_significant_up, category_significant_down, category_significant, category_notsignificant))%%00010df$color &lt;- factor(df$color, levels = c(&quot;olivedrab3&quot;, &quot;firebrick2&quot;, &quot;goldenrod2&quot;, &quot;grey40&quot;))%%00010%%00010df_summary &lt;- df_summary %&gt;%%%00010%%00009arrange(match(change, c(category_significant_up, category_significant_down, category_significant, category_notsignificant))) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, n, &quot;)&quot;)) %&gt;%%%00010%%00009filter(n &gt; 0)%%00010%%00010# create a df for labelling%%00010m &lt;- matrix(0, ncol = ncol(df), nrow = 0)%%00010df_label &lt;- as.data.frame(m)%%00010colnames(df_label) &lt;- colnames(df)%%00010top_n &lt;- knime.flow.in[[&quot;top_n&quot;]]%%00010%%00010%%00010# get all rows of points that should be labelled%%00010if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 1){ # all significant%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] %in% c(0,1)){ # ignore thresholds &amp; all changed%%00010%%00009%%00009temp &lt;- df[df$change %in% c(category_significant_up, category_significant_down),]%%00010%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){ # up%%00010%%00009%%00009temp &lt;- df[df$change == category_significant_up,]%%00010%%00009} else {%%00010%%00009%%00009temp &lt;- df[df$change == category_significant_down,]%%00010%%00009}%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00009%%00010}%%00010%%00010if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 2){ # top n%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 0){ # ignore thresholds%%00010%%00009%%00009if(top_n &gt; nrow(df)) top_n &lt;- nrow(df)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- df[1:top_n,]%%00010%%00009} else {%%00010%%00009%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 1){ # all changed%%00010%%00009%%00009%%00009temp &lt;- df[df$change %in% c(category_significant_up, category_significant_down),]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_up,]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 3){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_down,]%%00010%%00009%%00009}%%00010%%00009%%00009%%00010%%00009%%00009if(top_n &gt; nrow(temp)) top_n &lt;- nrow(temp)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- temp[1:top_n,]%%00010%%00009}%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00009%%00010}%%00010%%00010if(trimws(knime.flow.in[[&quot;manual_points&quot;]]) != &quot;&quot;){%%00010%%00009label_proteins &lt;- trimws(unlist(strsplit(knime.flow.in[[&quot;manual_points&quot;]], knime.flow.in[[&quot;delim&quot;]])))%%00010%%00009i_proteins &lt;- which(df$ID %in% label_proteins)%%00010%%00009temp &lt;- df[i_proteins,]%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010}%%00010%%00010# manual axis limits%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009x_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_x_limits&quot;]], &quot;;&quot;))%%00010%%00009x_min &lt;- as.numeric(x_limits[1])%%00010%%00009x_max &lt;- as.numeric(x_limits[2])%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009y_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_y_limits&quot;]], &quot;;&quot;))%%00010%%00009y_min &lt;- as.numeric(y_limits[1])%%00010%%00009y_max &lt;- as.numeric(y_limits[2])%%00010}%%00010%%00010# modify y axis label%%00010if (knime.flow.in[[&quot;y_axis_label&quot;]] == &quot;&quot;){%%00010%%00009if (knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009%%00009y_label &lt;- paste(&quot;-log&quot;, knime.flow.in[[&quot;p_value_column&quot;]])%%00010%%00009} else {%%00010%%00009%%00009y_label &lt;- knime.flow.in[[&quot;p_value_column&quot;]]%%00010%%00009}%%00010} else if (startsWith(knime.flow.in[[&quot;y_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009y_raw &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010%%00009y_raw &lt;- substr(y_raw, start = 12, stop = nchar(y_raw)-1)%%00010%%00009y_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, y_raw)%%00010%%00009y_label &lt;- parse(text = y_raw)%%00010} else {%%00010%%00009y_label &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010}%%00010%%00010# modify x axis label%%00010if (knime.flow.in[[&quot;x_axis_label&quot;]] == &quot;&quot;){%%00010%%00009x_label &lt;- knime.flow.in[[&quot;logFC_column&quot;]]%%00010} else if (startsWith(knime.flow.in[[&quot;x_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009x_raw &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010%%00009x_raw &lt;- substr(x_raw, start = 12, stop = nchar(x_raw)-1)%%00010%%00009x_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, x_raw)%%00010%%00009x_label &lt;- parse(text = x_raw)%%00010} else {%%00010%%00009x_label &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010}%%00010%%00010# calculate nudges%%00010if(logFC_threshold &gt; max(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_max &lt;- logFC_threshold%%00010} else {%%00010%%00009x_nudge_max &lt;- max(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010if(-logFC_threshold &lt; min(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_min &lt;- -logFC_threshold%%00010} else {%%00010%%00009x_nudge_min &lt;- min(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010x_nudge &lt;- (x_nudge_max - x_nudge_min) * 0.04%%00010%%00010if(p_threshold &gt; max(df$p, na.rm = TRUE)) {%%00010%%00009y_nudge &lt;- p_threshold * 0.04%%00010} else {%%00010%%00009y_nudge &lt;- max(df$p, na.rm = TRUE) * 0.04%%00010}%%00010%%00010if(nrow(df_label) &gt; 0) {%%00010%%00009df_label &lt;- mutate(df_label, nudge = ifelse(logFC &gt; 0, x_nudge, -x_nudge))%%00010}%%00010%%00010# plot the volcano plot%%00010p &lt;- ggplot() +%%00010%%00009geom_point(df, mapping = aes(x = logFC, y = p, color = color), size = 2) +%%00010%%00009scale_color_identity(guide = &quot;legend&quot;, labels = df_summary$full_change) +%%00010%%00009labs(title = knime.flow.in[[&quot;title&quot;]],%%00010%%00009%%00009subtitle = knime.flow.in[[&quot;full_subtitle&quot;]],%%00010%%00009%%00009y = y_label,%%00010%%00009%%00009x = x_label) +%%00010%%00009geom_hline(aes(yintercept = p_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = -logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009theme_bw(base_size = 14) +%%00010%%00009theme(plot.title = element_text(face = &quot;bold&quot;, hjust = 0.5),%%00010%%00009%%00009 legend.title = element_blank(),%%00010%%00009%%00009 #legend.justification = c(1.05, -0.1), %%00010%%00009%%00009 legend.position = &quot;bottom&quot;,%%00010%%00009%%00009 legend.box.background = element_rect(color = &quot;grey20&quot;, size = 1))%%00010%%00010if(nrow(df_label) &gt; 0){%%00010%%00009p &lt;- p +%%00010%%00009%%00009geom_text_repel(df_label, mapping = aes(x = logFC, y = p, label = ID), %%00010%%00009%%00009%%00009%%00009%%00009 inherit.aes = FALSE,%%00010%%00009%%00009%%00009%%00009%%00009 min.segment.length = 0,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_x = df_label$nudge,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_y = y_nudge,%%00010%%00009%%00009%%00009%%00009%%00009 max.time = 2,%%00010%%00009%%00009%%00009%%00009%%00009 max.overlaps = nrow(df_label),%%00010%%00009%%00009%%00009%%00009%%00009 force = 1)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009xlim(x_min, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009ylim(y_min, y_max)%%00010}%%00010%%00010p"/>
+            <entry key="script" type="xstring" value="# load required libraries%%00010library(ggplot2)%%00010library(dplyr)%%00010library(magrittr)%%00010library(ggrepel)%%00010library(gtable)%%00010library(grid)%%00010%%00010# categories for individual points in the scatter plot%%00010category_significant = 'Significant'%%00010category_significant_up = 'Up&amp;Sign.'%%00010category_significant_down = 'Down&amp;Sign.'%%00010category_notsignificant = 'Not sign.'%%00010category_ratio_up = 'Qual. up'%%00010category_ratio_down = 'Qual. down'%%00010%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_up &lt;- c(category_significant_up, category_ratio_up) else category_all_up &lt;- category_significant_up%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_down &lt;- c(category_significant_down, category_ratio_down) else category_all_up &lt;- category_significant_down%%00010%%00010# load table and perform -log10 transformation%%00010df &lt;- knime.in%%00010%%00010if(knime.flow.in[[&quot;zero_p_replacement&quot;]] != 0){%%00010%%00009zero_index &lt;- which(df$p == 0)%%00010%%00009df$p[zero_index] &lt;- knime.flow.in[[&quot;zero_p_replacement&quot;]]%%00010}%%00010%%00010if(knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009df &lt;- df %&gt;%%%00010%%00009%%00009mutate(p = -log10(p))%%00010}%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 0){%%00010%%00009df$Ratio &lt;- NA%%00010}%%00010%%00010p_threshold &lt;- -log10(knime.flow.in[[&quot;p_threshold&quot;]])%%00010logFC_threshold &lt;- knime.flow.in[[&quot;logFC_threshold&quot;]]%%00010%%00010# add column containing info about expression change%%00010df &lt;- df %&gt;%%%00010%%00009mutate(change = case_when(p &gt; p_threshold &amp; logFC &gt; logFC_threshold ~ category_significant_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; -logFC_threshold ~ category_significant_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; logFC_threshold &amp; logFC &gt; -logFC_threshold ~ category_significant,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &gt; 1 ~ category_ratio_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &lt; -1 ~ category_ratio_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 TRUE ~ category_notsignificant))%%00010%%00010# get number of proteins in each category%%00010df_summary &lt;- df %&gt;%%%00010%%00009group_by(change) %&gt;%%%00010%%00009summarize(n = n()) %&gt;%%%00010%%00009as.data.frame()%%00010%%00010all_changes &lt;- c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down)%%00010observed_changes &lt;- df_summary$change%%00010not_observed_changes &lt;- setdiff(all_changes, observed_changes)%%00010%%00010if(length(not_observed_changes) &gt; 0){%%00010%%00009df_summary_append &lt;- data.frame(change = not_observed_changes,%%00010%%00009%%00009%%00009%%00009%%00009%%00009%%00009  n = rep(0, times = length(not_observed_changes)))%%00010%%00009df_summary &lt;- rbind(df_summary, df_summary_append)%%00010}%%00010%%00010# add number of observed values in each category to the dataframe%%00010df &lt;- df %&gt;%%%00010%%00009mutate(count = case_when(change == category_significant_up ~ df_summary$n[which(df_summary$change == category_significant_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant_down ~ df_summary$n[which(df_summary$change == category_significant_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant ~ df_summary$n[which(df_summary$change == category_significant)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_up ~ df_summary$n[which(df_summary$change == category_ratio_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_down ~ df_summary$n[which(df_summary$change == category_ratio_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009TRUE ~ df_summary$n[which(df_summary$change == category_notsignificant)])) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, count, &quot;)&quot;),%%00010%%00009%%00009  color = case_when(change == category_significant_up ~ &quot;olivedrab3&quot;,%%00010%%00009%%00009                    change == category_significant_down ~ &quot;firebrick2&quot;,%%00010%%00009%%00009                    change == category_significant ~ &quot;goldenrod2&quot;,%%00010%%00009%%00009                    change == category_ratio_up ~ &quot;lightseagreen&quot;, %%00010%%00009%%00009                    change == category_ratio_down ~ &quot;maroon1&quot;,%%00010%%00009%%00009                    TRUE ~ &quot;grey40&quot;))%%00010%%00009%%00009                    %%00010if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 0){%%00010%%00009df$sorting &lt;- abs(df$logFC)%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 1){%%00010%%00009df$sorting &lt;- df$p%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 2){%%00010%%00009df$sorting &lt;- df$p*abs(df$logFC)%%00010}%%00010%%00009%%00009                    %%00010df &lt;- df %&gt;%%%00010%%00009arrange(desc(sorting))%%00009   %%00010%%00010# create values for plot legend%%00010df$change &lt;- factor(df$change, levels = c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))%%00010df$color &lt;- factor(df$color, levels = c(&quot;olivedrab3&quot;, &quot;firebrick2&quot;, &quot;goldenrod2&quot;, &quot;grey40&quot;, &quot;lightseagreen&quot;, 'maroon1'))%%00010%%00010df_summary &lt;- df_summary %&gt;%%%00010%%00009arrange(match(change, c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, n, &quot;)&quot;)) %&gt;%%%00010%%00009filter(n &gt; 0)%%00010%%00010# coalesce ratio and LIMMA columns%%00010df &lt;- df |&gt;%%00010%%00009mutate(facet = ifelse(is.na(Ratio), 'LIMMA', 'Ratio')) |&gt;%%00010%%00009mutate(logFC = coalesce(logFC, Ratio))%%00010%%00010df$p[which(is.na(df$p) &amp; df$facet == 'Ratio')] &lt;- -1%%00010%%00010# create a df for labelling%%00010m &lt;- matrix(0, ncol = ncol(df), nrow = 0)%%00010df_label &lt;- as.data.frame(m)%%00010colnames(df_label) &lt;- colnames(df)%%00010top_n &lt;- knime.flow.in[[&quot;top_n&quot;]]%%00010top_n_qual &lt;- knime.flow.in[[&quot;top_n_qual&quot;]]%%00010%%00010# get all rows of points that should be labelled%%00010if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 1){ # all significant%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] %in% c(0,1)){ # ignore thresholds &amp; all changed%%00010%%00009%%00009temp &lt;- df[df$change %in% c(category_all_up, category_all_down),]%%00010%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){ # up%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_up,]%%00010%%00009} else {%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_down,]%%00010%%00009}%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00009%%00010} else if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 2){ # top n%%00010%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) {%%00010%%00009%%00009%%00009df_qual &lt;- df |&gt;%%00010%%00009%%00009%%00009%%00009filter(facet == 'Ratio') |&gt;%%00010%%00009%%00009%%00009%%00009mutate(logFC_abs = abs(logFC)) |&gt;%%00010%%00009%%00009%%00009%%00009arrange(desc(logFC_abs)) |&gt;%%00010%%00009%%00009%%00009%%00009select(-logFC_abs)%%00010%%00009}%%00010%%00009%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 0) { # ignore thresholds%%00010%%00009%%00009if(top_n &gt; nrow(df)) top_n &lt;- nrow(df)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- df[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(df_qual)) top_n_qual &lt;- nrow(df_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, df_qual[1:top_n_qual,])%%00009%%00010%%00009} else {%%00010%%00009%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 1){ # all changed%%00010%%00009%%00009%%00009temp &lt;- df[df$change %in% c(category_significant_up, category_significant_down),]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change %in% c(category_ratio_up, category_ratio_down),]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_up,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_up,]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 3){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_down,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_down,]%%00010%%00009%%00009}%%00010%%00009%%00009%%00010%%00009%%00009if(top_n &gt; nrow(temp)) top_n &lt;- nrow(temp)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- temp[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(temp_qual)) top_n_qual &lt;- nrow(temp_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, temp_qual[1:top_n_qual,])%%00010%%00009}%%00010%%00009%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010}%%00010%%00010if(trimws(knime.flow.in[[&quot;manual_points&quot;]]) != &quot;&quot;){%%00010%%00009label_proteins &lt;- trimws(unlist(strsplit(knime.flow.in[[&quot;manual_points&quot;]], knime.flow.in[[&quot;delim&quot;]])))%%00010%%00009i_proteins &lt;- which(df$ID %in% label_proteins)%%00010%%00009temp &lt;- df[i_proteins,]%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010}%%00010%%00010# initiate variables for manual breaks%%00010max_break_y &lt;- c(max(df$p, na.rm = TRUE), p_threshold)%%00010max_break_x &lt;- c(max(df$logFC, na.rm = TRUE), logFC_threshold)%%00010%%00010# manual axis limits%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009x_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_x_limits&quot;]], &quot;;&quot;))%%00010%%00009x_min &lt;- as.numeric(x_limits[1])%%00010%%00009x_max &lt;- as.numeric(x_limits[2])%%00010%%00009max_break_x &lt;- c(max_break_x, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009y_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_y_limits&quot;]], &quot;;&quot;))%%00010%%00009y_min &lt;- as.numeric(y_limits[1])%%00010%%00009y_max &lt;- as.numeric(y_limits[2])%%00010%%00009max_break_y &lt;- c(max_break_y, y_max)%%00010}%%00010%%00010# modify y axis label%%00010if (knime.flow.in[[&quot;y_axis_label&quot;]] == &quot;&quot;){%%00010%%00009if (knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009%%00009y_label &lt;- paste(&quot;-log&quot;, knime.flow.in[[&quot;p_value_column&quot;]])%%00010%%00009} else {%%00010%%00009%%00009y_label &lt;- knime.flow.in[[&quot;p_value_column&quot;]]%%00010%%00009}%%00010} else if (startsWith(knime.flow.in[[&quot;y_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009y_raw &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010%%00009y_raw &lt;- substr(y_raw, start = 12, stop = nchar(y_raw)-1)%%00010%%00009y_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, y_raw)%%00010%%00009y_label &lt;- parse(text = y_raw)%%00010} else {%%00010%%00009y_label &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010}%%00010%%00010# modify x axis label%%00010if (knime.flow.in[[&quot;x_axis_label&quot;]] == &quot;&quot;){%%00010%%00009x_label &lt;- knime.flow.in[[&quot;logFC_column&quot;]]%%00010} else if (startsWith(knime.flow.in[[&quot;x_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009x_raw &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010%%00009x_raw &lt;- substr(x_raw, start = 12, stop = nchar(x_raw)-1)%%00010%%00009x_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, x_raw)%%00010%%00009x_label &lt;- parse(text = x_raw)%%00010} else {%%00010%%00009x_label &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010}%%00010%%00010# calculate nudges%%00010if(logFC_threshold &gt; max(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_max &lt;- logFC_threshold%%00010} else {%%00010%%00009x_nudge_max &lt;- max(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010if(-logFC_threshold &lt; min(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_min &lt;- -logFC_threshold%%00010} else {%%00010%%00009x_nudge_min &lt;- min(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010x_nudge &lt;- (x_nudge_max - x_nudge_min) * 0.04%%00010%%00010if(p_threshold &gt; max(df$p, na.rm = TRUE)) {%%00010%%00009y_nudge &lt;- p_threshold * 0.04%%00010} else {%%00010%%00009y_nudge &lt;- max(df$p, na.rm = TRUE) * 0.04%%00010}%%00010%%00010if(nrow(df_label) &gt; 0) {%%00010%%00009df_label &lt;- mutate(df_label, nudge = ifelse(logFC &gt; 0, x_nudge, -x_nudge))%%00010}%%00010%%00010# get major breaks%%00010max_break_y &lt;- max(max_break_y)%%00010five_breaks &lt;- max_break_y / 5%%00010break_length &lt;- round(five_breaks/0.5)*0.5%%00010breaks &lt;- 0%%00010while(breaks[length(breaks)] &lt;= max_break_y) breaks &lt;- c(breaks, breaks[length(breaks)] + break_length)%%00010%%00010# plot the volcano plot%%00010p &lt;- df |&gt;%%00010%%00009ggplot() +%%00010%%00009geom_point(df, mapping = aes(x = logFC, y = p, color = color), size = 2) +%%00010%%00009scale_color_identity(guide = &quot;legend&quot;, labels = df_summary$full_change) +%%00010%%00009labs(title = knime.flow.in[[&quot;title&quot;]],%%00010%%00009%%00009subtitle = knime.flow.in[[&quot;full_subtitle&quot;]],%%00010%%00009%%00009y = y_label,%%00010%%00009%%00009x = x_label) +%%00010%%00009scale_y_continuous(breaks = c(-1, breaks,5),%%00010%%00009%%00009%%00009%%00009    labels = ~ifelse(.x == -1, 'qual.', .x)) +%%00010%%00009geom_hline(data = df %&gt;% filter(facet == 'LIMMA'), aes(yintercept = p_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = -logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009theme_bw(base_size = 14) +%%00010%%00009theme(plot.title = element_text(face = &quot;bold&quot;, hjust = 0.5),%%00010%%00009%%00009 legend.title = element_blank(),%%00010%%00009%%00009 #legend.justification = c(1.05, -0.1), %%00010%%00009%%00009 legend.position = &quot;bottom&quot;,%%00010%%00009%%00009 legend.box.background = element_rect(color = &quot;grey20&quot;, size = 1),%%00010%%00009%%00009 panel.grid.minor = element_blank(),%%00010%%00009%%00009 strip.background = element_blank(),%%00010%%00009%%00009 strip.text = element_blank()) +%%00010%%00009facet_grid(facet~., space = 'free_y', scales = 'free_y')%%00010%%00010if(nrow(df_label) &gt; 0){%%00010%%00009p &lt;- p +%%00010%%00009%%00009geom_text_repel(df_label, mapping = aes(x = logFC, y = p, label = ID), %%00010%%00009%%00009%%00009%%00009%%00009 inherit.aes = FALSE,%%00010%%00009%%00009%%00009%%00009%%00009 min.segment.length = 0,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_x = df_label$nudge,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_y = y_nudge,%%00010%%00009%%00009%%00009%%00009%%00009 max.time = 2,%%00010%%00009%%00009%%00009%%00009%%00009 max.overlaps = nrow(df_label),%%00010%%00009%%00009%%00009%%00009%%00009 force = 1)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009xlim(x_min, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009ylim(y_min, y_max)%%00010}%%00010%%00010# remove y axis labelling from the bottom facet%%00010p_tab &lt;- ggplot_gtable(ggplot_build(p))%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 1) p_tab$heights[9] &lt;- p_tab$heights[9]*3%%00010%%00010grid.newpage()%%00010grid.draw(p_tab)%%00010"/>
             <entry key="templateUUID" type="xstring" isnull="true" value=""/>
             <entry key="version" type="xstring" value="version 1.x"/>
             <entry key="Output non numbers (NaN, Inf, -Inf) as missing cells" type="xboolean" value="false"/>
@@ -48,7 +48,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="create volcano plot"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="1209"/>
+        <entry key="x-coordinate" type="xint" value="1609"/>
         <entry key="y-coordinate" type="xint" value="679"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -66,11 +66,11 @@
     <entry key="node-bundle-name" type="xstring" value="KNIME R-Project nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.r"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202205161326"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202206271529"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Interactive R Statistics Integration"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.r.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202205161326"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.0.v202211090002"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="R View (Table)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Rule_based Row Splitter (#1566)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Rule_based Row Splitter (#1566)/settings.xml
new file mode 100644
index 000000000..8f79ec79d
--- /dev/null
+++ b/Metanodes templates/Graphs/Volcano plot/Rule_based Row Splitter (#1566)/settings.xml	
@@ -0,0 +1,53 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
+    <entry key="node_file" type="xstring" value="settings.xml"/>
+    <config key="flow_stack"/>
+    <config key="internal_node_subsettings">
+        <entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
+    </config>
+    <config key="model">
+        <config key="rules">
+            <entry key="array-size" type="xint" value="1"/>
+            <entry key="0" type="xstring" value="MISSING $logFC$ OR MISSING $p$ =&gt; TRUE"/>
+        </config>
+        <entry key="new-column-name" type="xstring" value=""/>
+        <entry key="replace-column-name" type="xstring" value=""/>
+        <entry key="append-column" type="xboolean" value="true"/>
+        <entry key="disallowLongOutputForCompatibility" type="xboolean" value="false"/>
+        <config key="include_Internals">
+            <entry key="SettingsModelID" type="xstring" value="SMID_boolean"/>
+            <entry key="EnabledStatus" type="xboolean" value="true"/>
+        </config>
+        <entry key="include" type="xboolean" value="true"/>
+    </config>
+    <entry key="customDescription" type="xstring" isnull="true" value=""/>
+    <entry key="state" type="xstring" value="IDLE"/>
+    <entry key="factory" type="xstring" value="org.knime.base.node.rules.engine.RuleEngineSplitterNodeFactory"/>
+    <entry key="node-name" type="xstring" value="Rule-based Row Splitter"/>
+    <entry key="node-bundle-name" type="xstring" value="KNIME Java Snippet Nodes"/>
+    <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.jsnippets"/>
+    <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202211082357"/>
+    <entry key="node-feature-name" type="xstring" value="KNIME Javasnippet"/>
+    <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.javasnippet.feature.group"/>
+    <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.0.v202211082357"/>
+    <config key="factory_settings"/>
+    <entry key="name" type="xstring" value="Rule-based Row Splitter"/>
+    <entry key="hasContent" type="xboolean" value="false"/>
+    <entry key="isInactive" type="xboolean" value="false"/>
+    <config key="ports">
+        <config key="port_1">
+            <entry key="index" type="xint" value="1"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+        <config key="port_2">
+            <entry key="index" type="xint" value="2"/>
+            <entry key="port_dir_location" type="xstring" isnull="true" value=""/>
+        </config>
+    </config>
+    <config key="filestores">
+        <entry key="file_store_location" type="xstring" isnull="true" value=""/>
+        <entry key="file_store_id" type="xstring" isnull="true" value=""/>
+    </config>
+</config>
diff --git a/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#372)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1556)/settings.xml
similarity index 92%
rename from Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#372)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1556)/settings.xml
index 58352d3fe..562d0d92c 100644
--- a/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#372)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1556)/settings.xml	
@@ -21,7 +21,7 @@
         <config key="possible_choices">
             <entry key="array-size" type="xint" value="3"/>
             <entry key="0" type="xstring" value="none, manual only"/>
-            <entry key="1" type="xstring" value="all significant"/>
+            <entry key="1" type="xstring" value="significant"/>
             <entry key="2" type="xstring" value="top N"/>
         </config>
         <entry key="type" type="xstring" value="Dropdown"/>
@@ -31,7 +31,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="type of labelling"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="669"/>
+        <entry key="x-coordinate" type="xint" value="670"/>
         <entry key="y-coordinate" type="xint" value="119"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -52,17 +52,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.selection.single.SingleSelectionDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Single Selection Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Single Selection Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#374)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1558)/settings.xml
similarity index 94%
rename from Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#374)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1558)/settings.xml
index d20ed9a0e..a53b7181d 100644
--- a/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#374)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1558)/settings.xml	
@@ -31,7 +31,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="top N ranking%%00010criteria"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="950"/>
+        <entry key="x-coordinate" type="xint" value="970"/>
         <entry key="y-coordinate" type="xint" value="119"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -52,17 +52,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.selection.single.SingleSelectionDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Single Selection Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Single Selection Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#375)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1560)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#375)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1560)/settings.xml
index 39f5818b9..65bf3ef11 100644
--- a/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#375)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Single Selection Configuration (#1560)/settings.xml	
@@ -32,7 +32,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="use thresholds%%00010for labelling"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="30"/>
+        <entry key="x-coordinate" type="xint" value="170"/>
         <entry key="y-coordinate" type="xint" value="279"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -44,17 +44,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.selection.single.SingleSelectionDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="Single Selection Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="Single Selection Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Configuration (#340)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1542)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/String Configuration (#340)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Configuration (#1542)/settings.xml
index bcc3459db..006094af5 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Configuration (#340)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1542)/settings.xml	
@@ -24,7 +24,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="graph subtitle"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="669"/>
+        <entry key="x-coordinate" type="xint" value="829"/>
         <entry key="y-coordinate" type="xint" value="-41"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -45,17 +45,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.string.StringDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="String Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="String Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Configuration (#341)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1543)/settings.xml
similarity index 92%
rename from Metanodes templates/Graphs/Volcano plot/String Configuration (#341)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Configuration (#1543)/settings.xml
index 046ff73b1..d9ef09423 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Configuration (#341)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1543)/settings.xml	
@@ -24,8 +24,8 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="x axis title"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="29"/>
-        <entry key="y-coordinate" type="xint" value="119"/>
+        <entry key="x-coordinate" type="xint" value="969"/>
+        <entry key="y-coordinate" type="xint" value="-41"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
         <entry key="alignment" type="xstring" value="CENTER"/>
@@ -45,17 +45,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.string.StringDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="String Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="String Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Configuration (#342)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1544)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/String Configuration (#342)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Configuration (#1544)/settings.xml
index 2c4893a5e..9a169cc8b 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Configuration (#342)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1544)/settings.xml	
@@ -24,7 +24,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="y axis title"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="189"/>
+        <entry key="x-coordinate" type="xint" value="29"/>
         <entry key="y-coordinate" type="xint" value="119"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -45,17 +45,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.string.StringDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="String Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="String Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Configuration (#343)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1545)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/String Configuration (#343)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Configuration (#1545)/settings.xml
index 548ccd94c..80c068d14 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Configuration (#343)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1545)/settings.xml	
@@ -24,7 +24,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="manual x axis %%00010limits values"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="349"/>
+        <entry key="x-coordinate" type="xint" value="189"/>
         <entry key="y-coordinate" type="xint" value="119"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -36,17 +36,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.string.StringDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="String Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="String Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Configuration (#344)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1546)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/String Configuration (#344)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Configuration (#1546)/settings.xml
index 669507d6c..4b6ea34b9 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Configuration (#344)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1546)/settings.xml	
@@ -24,7 +24,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="manual y axis %%00010limits values"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="509"/>
+        <entry key="x-coordinate" type="xint" value="349"/>
         <entry key="y-coordinate" type="xint" value="119"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -45,17 +45,17 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.string.StringDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="String Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="String Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Configuration (#376)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1561)/settings.xml
similarity index 93%
rename from Metanodes templates/Graphs/Volcano plot/String Configuration (#376)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Configuration (#1561)/settings.xml
index 4e962dcd0..55e2001da 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Configuration (#376)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1561)/settings.xml	
@@ -24,7 +24,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="user-selected%%00010points"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="189"/>
+        <entry key="x-coordinate" type="xint" value="329"/>
         <entry key="y-coordinate" type="xint" value="279"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="32"/>
@@ -36,17 +36,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.string.StringDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="String Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="String Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Configuration (#378)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1563)/settings.xml
similarity index 92%
rename from Metanodes templates/Graphs/Volcano plot/String Configuration (#378)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Configuration (#1563)/settings.xml
index 1ce19f4ff..664db9004 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Configuration (#378)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Configuration (#1563)/settings.xml	
@@ -24,7 +24,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="plot size"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="509"/>
+        <entry key="x-coordinate" type="xint" value="669"/>
         <entry key="y-coordinate" type="xint" value="279"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -36,17 +36,17 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.string.StringDialogNodeFactory"/>
     <entry key="node-name" type="xstring" value="String Configuration"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
     <entry key="name" type="xstring" value="String Configuration"/>
     <entry key="hasContent" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/String Input (#377)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1562)/settings.xml
similarity index 89%
rename from Metanodes templates/Graphs/Volcano plot/String Input (#377)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1562)/settings.xml
index fb2ffa1cd..3e8965fc3 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Input (#377)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1562)/settings.xml	
@@ -26,7 +26,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="delimiter"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="349"/>
+        <entry key="x-coordinate" type="xint" value="509"/>
         <entry key="y-coordinate" type="xint" value="279"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -38,19 +38,19 @@
         <config key="styles"/>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.string.StringInputQuickFormNodeFactory"/>
-    <entry key="node-name" type="xstring" value="String Input"/>
+    <entry key="node-name" type="xstring" value="String Input (legacy)"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
-    <entry key="name" type="xstring" value="String Input"/>
+    <entry key="name" type="xstring" value="String Input (legacy)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
     <entry key="isInactive" type="xboolean" value="false"/>
     <config key="ports">
diff --git a/Metanodes templates/Graphs/Volcano plot/String Input (#1525)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1564)/settings.xml
similarity index 90%
rename from Metanodes templates/Graphs/Volcano plot/String Input (#1525)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1564)/settings.xml
index aed3fbc71..660e45d0c 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Input (#1525)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1564)/settings.xml	
@@ -26,7 +26,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="python3command"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="669"/>
+        <entry key="x-coordinate" type="xint" value="829"/>
         <entry key="y-coordinate" type="xint" value="279"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -47,19 +47,19 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.string.StringInputQuickFormNodeFactory"/>
-    <entry key="node-name" type="xstring" value="String Input"/>
+    <entry key="node-name" type="xstring" value="String Input (legacy)"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
-    <entry key="name" type="xstring" value="String Input"/>
+    <entry key="name" type="xstring" value="String Input (legacy)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
     <entry key="isInactive" type="xboolean" value="false"/>
     <config key="ports">
diff --git a/Metanodes templates/Graphs/Volcano plot/String Input (#1526)/settings.xml b/Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1565)/settings.xml
similarity index 90%
rename from Metanodes templates/Graphs/Volcano plot/String Input (#1526)/settings.xml
rename to Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1565)/settings.xml
index 34ce9af9b..02d085f9e 100644
--- a/Metanodes templates/Graphs/Volcano plot/String Input (#1526)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/String Input _legacy_ (#1565)/settings.xml	
@@ -26,7 +26,7 @@
     <config key="nodeAnnotation">
         <entry key="text" type="xstring" value="Rcommand"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="809"/>
+        <entry key="x-coordinate" type="xint" value="989"/>
         <entry key="y-coordinate" type="xint" value="279"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
@@ -47,19 +47,19 @@
         </config>
     </config>
     <entry key="customDescription" type="xstring" isnull="true" value=""/>
-    <entry key="state" type="xstring" value="CONFIGURED"/>
+    <entry key="state" type="xstring" value="IDLE"/>
     <entry key="factory" type="xstring" value="org.knime.js.base.node.quickform.input.string.StringInputQuickFormNodeFactory"/>
-    <entry key="node-name" type="xstring" value="String Input"/>
+    <entry key="node-name" type="xstring" value="String Input (legacy)"/>
     <entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
     <entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
     <entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
+    <entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
     <entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
     <entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
     <entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
-    <entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
+    <entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
     <config key="factory_settings"/>
-    <entry key="name" type="xstring" value="String Input"/>
+    <entry key="name" type="xstring" value="String Input (legacy)"/>
     <entry key="hasContent" type="xboolean" value="false"/>
     <entry key="isInactive" type="xboolean" value="false"/>
     <config key="ports">
diff --git a/Metanodes templates/Graphs/Volcano plot/settings.xml b/Metanodes templates/Graphs/Volcano plot/settings.xml
index 3f80d7c60..c50ba6429 100644
--- a/Metanodes templates/Graphs/Volcano plot/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/settings.xml	
@@ -8,10 +8,10 @@
     <config key="model"/>
     <config key="variables"/>
     <config key="nodeAnnotation">
-        <entry key="text" type="xstring" value=""/>
+        <entry key="text" type="xstring" value="adj.P.value"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="249"/>
-        <entry key="y-coordinate" type="xint" value="1159"/>
+        <entry key="x-coordinate" type="xint" value="309"/>
+        <entry key="y-coordinate" type="xint" value="159"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
         <entry key="alignment" type="xstring" value="CENTER"/>
@@ -43,7 +43,7 @@
         </config>
     </config>
     <config key="metadata">
-        <entry key="description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value.%%00010%%00010Ratios/fold changes should be provided in log transformed format (logFC) together with the logFC limit for values categorization, visualization and summary.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.6 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 3.6 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.6.3 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.6.3a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.5 from 2023-02-22%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
+        <entry key="description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.6 from 2023-12-04%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
         <config key="inports">
             <config key="inport_0">
                 <entry key="name" type="xstring" value="Input data"/>
@@ -61,7 +61,7 @@
     </config>
     <config key="workflow_template_information">
         <entry key="role" type="xstring" value="Template"/>
-        <entry key="timestamp" type="xstring" value="2023-02-22 15:49:34 +0100"/>
+        <entry key="timestamp" type="xstring" value="2023-12-04 12:12:37 +0100"/>
         <entry key="sourceURI" type="xstring" isnull="true" value=""/>
         <entry key="templateType" type="xstring" value="SubNode"/>
     </config>
diff --git a/Metanodes templates/Graphs/Volcano plot/template.knime b/Metanodes templates/Graphs/Volcano plot/template.knime
index 73edceba9..2ca9fd5ce 100644
--- a/Metanodes templates/Graphs/Volcano plot/template.knime	
+++ b/Metanodes templates/Graphs/Volcano plot/template.knime	
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="Template">
-    <entry key="created_by" type="xstring" value="4.6.3.v202209271016"/>
+    <entry key="created_by" type="xstring" value="4.7.7.v202308161346"/>
     <entry key="created_by_nightly" type="xboolean" value="false"/>
     <entry key="version" type="xstring" value="4.1.0"/>
     <config key="workflow_template_information">
         <entry key="role" type="xstring" value="Template"/>
-        <entry key="timestamp" type="xstring" value="2023-02-22 15:49:34 +0100"/>
+        <entry key="timestamp" type="xstring" value="2023-12-04 12:12:37 +0100"/>
         <entry key="sourceURI" type="xstring" isnull="true" value=""/>
         <entry key="templateType" type="xstring" value="SubNode"/>
     </config>
diff --git a/Metanodes templates/Graphs/Volcano plot/workflow.knime b/Metanodes templates/Graphs/Volcano plot/workflow.knime
index c54df3886..4dc91b6fc 100644
--- a/Metanodes templates/Graphs/Volcano plot/workflow.knime	
+++ b/Metanodes templates/Graphs/Volcano plot/workflow.knime	
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="workflow.knime">
-    <entry key="created_by" type="xstring" value="4.6.3.v202209271016"/>
+    <entry key="created_by" type="xstring" value="4.7.7.v202308161346"/>
     <entry key="created_by_nightly" type="xboolean" value="false"/>
     <entry key="version" type="xstring" value="4.1.0"/>
     <entry key="name" type="xstring" isnull="true" value=""/>
@@ -11,10 +11,10 @@
         <entry key="lastEdited-when" type="xstring" isnull="true" value=""/>
     </config>
     <config key="nodeAnnotation">
-        <entry key="text" type="xstring" value=""/>
+        <entry key="text" type="xstring" value="adj.P.value"/>
         <entry key="bgcolor" type="xint" value="16777215"/>
-        <entry key="x-coordinate" type="xint" value="249"/>
-        <entry key="y-coordinate" type="xint" value="1159"/>
+        <entry key="x-coordinate" type="xint" value="309"/>
+        <entry key="y-coordinate" type="xint" value="159"/>
         <entry key="width" type="xint" value="142"/>
         <entry key="height" type="xint" value="17"/>
         <entry key="alignment" type="xstring" value="CENTER"/>
@@ -53,7 +53,7 @@
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="1444"/>
+                    <entry key="0" type="xint" value="1824"/>
                     <entry key="1" type="xint" value="617"/>
                     <entry key="2" type="xint" value="155"/>
                     <entry key="3" type="xint" value="80"/>
@@ -156,329 +156,505 @@
                 </config>
             </config>
         </config>
-        <config key="node_338">
-            <entry key="id" type="xint" value="338"/>
-            <entry key="node_settings_file" type="xstring" value="Double Configuration (#338)/settings.xml"/>
+        <config key="node_348">
+            <entry key="id" type="xint" value="348"/>
+            <entry key="node_settings_file" type="xstring" value="Python Edit Variable _legacy_ (#348)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="404"/>
-                    <entry key="1" type="xint" value="-103"/>
-                    <entry key="2" type="xint" value="112"/>
+                    <entry key="0" type="xint" value="1205"/>
+                    <entry key="1" type="xint" value="217"/>
+                    <entry key="2" type="xint" value="144"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_339">
-            <entry key="id" type="xint" value="339"/>
-            <entry key="node_settings_file" type="xstring" value="Double Configuration (#339)/settings.xml"/>
+        <config key="node_349">
+            <entry key="id" type="xint" value="349"/>
+            <entry key="node_settings_file" type="xstring" value="Column Filter (#349)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="564"/>
-                    <entry key="1" type="xint" value="-103"/>
+                    <entry key="0" type="xint" value="424"/>
+                    <entry key="1" type="xint" value="757"/>
                     <entry key="2" type="xint" value="112"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_351">
+            <entry key="id" type="xint" value="351"/>
+            <entry key="node_settings_file" type="xstring" value="Column Rename _Regex_ (#351)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="664"/>
+                    <entry key="1" type="xint" value="477"/>
+                    <entry key="2" type="xint" value="133"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_340">
-            <entry key="id" type="xint" value="340"/>
-            <entry key="node_settings_file" type="xstring" value="String Configuration (#340)/settings.xml"/>
+        <config key="node_352">
+            <entry key="id" type="xint" value="352"/>
+            <entry key="node_settings_file" type="xstring" value="Column Rename _Regex_ (#352)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="724"/>
-                    <entry key="1" type="xint" value="-103"/>
-                    <entry key="2" type="xint" value="112"/>
+                    <entry key="0" type="xint" value="664"/>
+                    <entry key="1" type="xint" value="617"/>
+                    <entry key="2" type="xint" value="133"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_341">
-            <entry key="id" type="xint" value="341"/>
-            <entry key="node_settings_file" type="xstring" value="String Configuration (#341)/settings.xml"/>
+        <config key="node_353">
+            <entry key="id" type="xint" value="353"/>
+            <entry key="node_settings_file" type="xstring" value="Column Rename _Regex_ (#353)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="84"/>
-                    <entry key="1" type="xint" value="57"/>
+                    <entry key="0" type="xint" value="664"/>
+                    <entry key="1" type="xint" value="757"/>
+                    <entry key="2" type="xint" value="133"/>
+                    <entry key="3" type="xint" value="97"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_357">
+            <entry key="id" type="xint" value="357"/>
+            <entry key="node_settings_file" type="xstring" value="R View _Table_ (#357)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="1664"/>
+                    <entry key="1" type="xint" value="617"/>
+                    <entry key="2" type="xint" value="118"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1527">
+            <entry key="id" type="xint" value="1527"/>
+            <entry key="node_settings_file" type="xstring" value="Column Appender (#1527)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="1084"/>
+                    <entry key="1" type="xint" value="617"/>
+                    <entry key="2" type="xint" value="148"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1528">
+            <entry key="id" type="xint" value="1528"/>
+            <entry key="node_settings_file" type="xstring" value="R Snippet (#1528)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="885"/>
+                    <entry key="1" type="xint" value="757"/>
+                    <entry key="2" type="xint" value="81"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1530">
+            <entry key="id" type="xint" value="1530"/>
+            <entry key="node_settings_file" type="xstring" value="Column Filter (#1530)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="424"/>
+                    <entry key="1" type="xint" value="897"/>
                     <entry key="2" type="xint" value="112"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1532">
+            <entry key="id" type="xint" value="1532"/>
+            <entry key="node_settings_file" type="xstring" value="Joiner (#1532)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="1285"/>
+                    <entry key="1" type="xint" value="897"/>
+                    <entry key="2" type="xint" value="50"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1533">
+            <entry key="id" type="xint" value="1533"/>
+            <entry key="node_settings_file" type="xstring" value="Column Rename _Regex_ (#1533)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="665"/>
+                    <entry key="1" type="xint" value="897"/>
+                    <entry key="2" type="xint" value="133"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_342">
-            <entry key="id" type="xint" value="342"/>
-            <entry key="node_settings_file" type="xstring" value="String Configuration (#342)/settings.xml"/>
+        <config key="node_1534">
+            <entry key="id" type="xint" value="1534"/>
+            <entry key="node_settings_file" type="xstring" value="Joiner (#1534)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="244"/>
-                    <entry key="1" type="xint" value="57"/>
+                    <entry key="0" type="xint" value="1405"/>
+                    <entry key="1" type="xint" value="757"/>
+                    <entry key="2" type="xint" value="50"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1535">
+            <entry key="id" type="xint" value="1535"/>
+            <entry key="node_settings_file" type="xstring" value="Boolean Configuration (#1535)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="405"/>
+                    <entry key="1" type="xint" value="-103"/>
                     <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_343">
-            <entry key="id" type="xint" value="343"/>
-            <entry key="node_settings_file" type="xstring" value="String Configuration (#343)/settings.xml"/>
+        <config key="node_1536">
+            <entry key="id" type="xint" value="1536"/>
+            <entry key="node_settings_file" type="xstring" value="IF Switch (#1536)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="404"/>
-                    <entry key="1" type="xint" value="57"/>
+                    <entry key="0" type="xint" value="1225"/>
+                    <entry key="1" type="xint" value="617"/>
+                    <entry key="2" type="xint" value="75"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1537">
+            <entry key="id" type="xint" value="1537"/>
+            <entry key="node_settings_file" type="xstring" value="End IF (#1537)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="1545"/>
+                    <entry key="1" type="xint" value="617"/>
+                    <entry key="2" type="xint" value="51"/>
+                    <entry key="3" type="xint" value="80"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1539">
+            <entry key="id" type="xint" value="1539"/>
+            <entry key="node_settings_file" type="xstring" value="Column Selection Configuration (#1539)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="225"/>
+                    <entry key="1" type="xint" value="897"/>
+                    <entry key="2" type="xint" value="144"/>
+                    <entry key="3" type="xint" value="97"/>
+                </config>
+            </config>
+        </config>
+        <config key="node_1540">
+            <entry key="id" type="xint" value="1540"/>
+            <entry key="node_settings_file" type="xstring" value="Double Configuration (#1540)/settings.xml"/>
+            <entry key="node_is_meta" type="xboolean" value="false"/>
+            <entry key="node_type" type="xstring" value="NativeNode"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
+            <config key="ui_settings">
+                <config key="extrainfo.node.bounds">
+                    <entry key="array-size" type="xint" value="4"/>
+                    <entry key="0" type="xint" value="565"/>
+                    <entry key="1" type="xint" value="-103"/>
                     <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_344">
-            <entry key="id" type="xint" value="344"/>
-            <entry key="node_settings_file" type="xstring" value="String Configuration (#344)/settings.xml"/>
+        <config key="node_1541">
+            <entry key="id" type="xint" value="1541"/>
+            <entry key="node_settings_file" type="xstring" value="Double Configuration (#1541)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="564"/>
-                    <entry key="1" type="xint" value="57"/>
+                    <entry key="0" type="xint" value="725"/>
+                    <entry key="1" type="xint" value="-103"/>
                     <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_346">
-            <entry key="id" type="xint" value="346"/>
-            <entry key="node_settings_file" type="xstring" value="Column Selection Configuration (#346)/settings.xml"/>
+        <config key="node_1542">
+            <entry key="id" type="xint" value="1542"/>
+            <entry key="node_settings_file" type="xstring" value="String Configuration (#1542)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="224"/>
-                    <entry key="1" type="xint" value="757"/>
-                    <entry key="2" type="xint" value="144"/>
+                    <entry key="0" type="xint" value="884"/>
+                    <entry key="1" type="xint" value="-103"/>
+                    <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_348">
-            <entry key="id" type="xint" value="348"/>
-            <entry key="node_settings_file" type="xstring" value="Python Edit Variable (#348)/settings.xml"/>
+        <config key="node_1543">
+            <entry key="id" type="xint" value="1543"/>
+            <entry key="node_settings_file" type="xstring" value="String Configuration (#1543)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="1004"/>
-                    <entry key="1" type="xint" value="217"/>
-                    <entry key="2" type="xint" value="95"/>
+                    <entry key="0" type="xint" value="1024"/>
+                    <entry key="1" type="xint" value="-103"/>
+                    <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_349">
-            <entry key="id" type="xint" value="349"/>
-            <entry key="node_settings_file" type="xstring" value="Column Filter (#349)/settings.xml"/>
+        <config key="node_1544">
+            <entry key="id" type="xint" value="1544"/>
+            <entry key="node_settings_file" type="xstring" value="String Configuration (#1544)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="424"/>
-                    <entry key="1" type="xint" value="757"/>
+                    <entry key="0" type="xint" value="84"/>
+                    <entry key="1" type="xint" value="57"/>
                     <entry key="2" type="xint" value="112"/>
-                    <entry key="3" type="xint" value="80"/>
+                    <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_351">
-            <entry key="id" type="xint" value="351"/>
-            <entry key="node_settings_file" type="xstring" value="Column Rename _Regex_ (#351)/settings.xml"/>
+        <config key="node_1545">
+            <entry key="id" type="xint" value="1545"/>
+            <entry key="node_settings_file" type="xstring" value="String Configuration (#1545)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="664"/>
-                    <entry key="1" type="xint" value="477"/>
-                    <entry key="2" type="xint" value="133"/>
+                    <entry key="0" type="xint" value="244"/>
+                    <entry key="1" type="xint" value="57"/>
+                    <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_352">
-            <entry key="id" type="xint" value="352"/>
-            <entry key="node_settings_file" type="xstring" value="Column Rename _Regex_ (#352)/settings.xml"/>
+        <config key="node_1546">
+            <entry key="id" type="xint" value="1546"/>
+            <entry key="node_settings_file" type="xstring" value="String Configuration (#1546)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="664"/>
-                    <entry key="1" type="xint" value="617"/>
-                    <entry key="2" type="xint" value="133"/>
+                    <entry key="0" type="xint" value="404"/>
+                    <entry key="1" type="xint" value="57"/>
+                    <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_353">
-            <entry key="id" type="xint" value="353"/>
-            <entry key="node_settings_file" type="xstring" value="Column Rename _Regex_ (#353)/settings.xml"/>
+        <config key="node_1548">
+            <entry key="id" type="xint" value="1548"/>
+            <entry key="node_settings_file" type="xstring" value="Column Selection Configuration (#1548)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="664"/>
+                    <entry key="0" type="xint" value="225"/>
                     <entry key="1" type="xint" value="757"/>
-                    <entry key="2" type="xint" value="133"/>
+                    <entry key="2" type="xint" value="144"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_357">
-            <entry key="id" type="xint" value="357"/>
-            <entry key="node_settings_file" type="xstring" value="R View _Table_ (#357)/settings.xml"/>
+        <config key="node_1555">
+            <entry key="id" type="xint" value="1555"/>
+            <entry key="node_settings_file" type="xstring" value="Boolean Configuration (#1555)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="1264"/>
-                    <entry key="1" type="xint" value="617"/>
-                    <entry key="2" type="xint" value="118"/>
-                    <entry key="3" type="xint" value="80"/>
+                    <entry key="0" type="xint" value="565"/>
+                    <entry key="1" type="xint" value="57"/>
+                    <entry key="2" type="xint" value="112"/>
+                    <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_372">
-            <entry key="id" type="xint" value="372"/>
-            <entry key="node_settings_file" type="xstring" value="Single Selection Configuration (#372)/settings.xml"/>
+        <config key="node_1556">
+            <entry key="id" type="xint" value="1556"/>
+            <entry key="node_settings_file" type="xstring" value="Single Selection Configuration (#1556)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="724"/>
+                    <entry key="0" type="xint" value="725"/>
                     <entry key="1" type="xint" value="57"/>
                     <entry key="2" type="xint" value="135"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_373">
-            <entry key="id" type="xint" value="373"/>
-            <entry key="node_settings_file" type="xstring" value="Integer Configuration (#373)/settings.xml"/>
+        <config key="node_1557">
+            <entry key="id" type="xint" value="1557"/>
+            <entry key="node_settings_file" type="xstring" value="Integer Configuration (#1557)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="864"/>
+                    <entry key="0" type="xint" value="884"/>
                     <entry key="1" type="xint" value="57"/>
                     <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_374">
-            <entry key="id" type="xint" value="374"/>
-            <entry key="node_settings_file" type="xstring" value="Single Selection Configuration (#374)/settings.xml"/>
+        <config key="node_1558">
+            <entry key="id" type="xint" value="1558"/>
+            <entry key="node_settings_file" type="xstring" value="Single Selection Configuration (#1558)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="1005"/>
+                    <entry key="0" type="xint" value="1025"/>
                     <entry key="1" type="xint" value="57"/>
                     <entry key="2" type="xint" value="135"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_375">
-            <entry key="id" type="xint" value="375"/>
-            <entry key="node_settings_file" type="xstring" value="Single Selection Configuration (#375)/settings.xml"/>
+        <config key="node_1559">
+            <entry key="id" type="xint" value="1559"/>
+            <entry key="node_settings_file" type="xstring" value="Integer Configuration (#1559)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="85"/>
+                    <entry key="0" type="xint" value="64"/>
                     <entry key="1" type="xint" value="217"/>
-                    <entry key="2" type="xint" value="135"/>
+                    <entry key="2" type="xint" value="112"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_376">
-            <entry key="id" type="xint" value="376"/>
-            <entry key="node_settings_file" type="xstring" value="String Configuration (#376)/settings.xml"/>
+        <config key="node_1560">
+            <entry key="id" type="xint" value="1560"/>
+            <entry key="node_settings_file" type="xstring" value="Single Selection Configuration (#1560)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="244"/>
+                    <entry key="0" type="xint" value="225"/>
                     <entry key="1" type="xint" value="217"/>
-                    <entry key="2" type="xint" value="112"/>
+                    <entry key="2" type="xint" value="135"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_377">
-            <entry key="id" type="xint" value="377"/>
-            <entry key="node_settings_file" type="xstring" value="String Input (#377)/settings.xml"/>
+        <config key="node_1561">
+            <entry key="id" type="xint" value="1561"/>
+            <entry key="node_settings_file" type="xstring" value="String Configuration (#1561)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="404"/>
+                    <entry key="0" type="xint" value="384"/>
                     <entry key="1" type="xint" value="217"/>
-                    <entry key="2" type="xint" value="100"/>
-                    <entry key="3" type="xint" value="80"/>
+                    <entry key="2" type="xint" value="112"/>
+                    <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_378">
-            <entry key="id" type="xint" value="378"/>
-            <entry key="node_settings_file" type="xstring" value="String Configuration (#378)/settings.xml"/>
+        <config key="node_1562">
+            <entry key="id" type="xint" value="1562"/>
+            <entry key="node_settings_file" type="xstring" value="String Input _legacy_ (#1562)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
@@ -487,14 +663,14 @@
                     <entry key="array-size" type="xint" value="4"/>
                     <entry key="0" type="xint" value="564"/>
                     <entry key="1" type="xint" value="217"/>
-                    <entry key="2" type="xint" value="112"/>
+                    <entry key="2" type="xint" value="100"/>
                     <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_1525">
-            <entry key="id" type="xint" value="1525"/>
-            <entry key="node_settings_file" type="xstring" value="String Input (#1525)/settings.xml"/>
+        <config key="node_1563">
+            <entry key="id" type="xint" value="1563"/>
+            <entry key="node_settings_file" type="xstring" value="String Configuration (#1563)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
@@ -503,56 +679,56 @@
                     <entry key="array-size" type="xint" value="4"/>
                     <entry key="0" type="xint" value="724"/>
                     <entry key="1" type="xint" value="217"/>
-                    <entry key="2" type="xint" value="100"/>
-                    <entry key="3" type="xint" value="80"/>
+                    <entry key="2" type="xint" value="112"/>
+                    <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_1526">
-            <entry key="id" type="xint" value="1526"/>
-            <entry key="node_settings_file" type="xstring" value="String Input (#1526)/settings.xml"/>
+        <config key="node_1564">
+            <entry key="id" type="xint" value="1564"/>
+            <entry key="node_settings_file" type="xstring" value="String Input _legacy_ (#1564)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="864"/>
+                    <entry key="0" type="xint" value="884"/>
                     <entry key="1" type="xint" value="217"/>
                     <entry key="2" type="xint" value="100"/>
-                    <entry key="3" type="xint" value="80"/>
+                    <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_1527">
-            <entry key="id" type="xint" value="1527"/>
-            <entry key="node_settings_file" type="xstring" value="Column Appender (#1527)/settings.xml"/>
+        <config key="node_1565">
+            <entry key="id" type="xint" value="1565"/>
+            <entry key="node_settings_file" type="xstring" value="String Input _legacy_ (#1565)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="1084"/>
-                    <entry key="1" type="xint" value="617"/>
-                    <entry key="2" type="xint" value="148"/>
-                    <entry key="3" type="xint" value="80"/>
+                    <entry key="0" type="xint" value="1044"/>
+                    <entry key="1" type="xint" value="217"/>
+                    <entry key="2" type="xint" value="100"/>
+                    <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
-        <config key="node_1528">
-            <entry key="id" type="xint" value="1528"/>
-            <entry key="node_settings_file" type="xstring" value="R Snippet (#1528)/settings.xml"/>
+        <config key="node_1566">
+            <entry key="id" type="xint" value="1566"/>
+            <entry key="node_settings_file" type="xstring" value="Rule_based Row Splitter (#1566)/settings.xml"/>
             <entry key="node_is_meta" type="xboolean" value="false"/>
             <entry key="node_type" type="xstring" value="NativeNode"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.NodeUIInformation"/>
             <config key="ui_settings">
                 <config key="extrainfo.node.bounds">
                     <entry key="array-size" type="xint" value="4"/>
-                    <entry key="0" type="xint" value="885"/>
+                    <entry key="0" type="xint" value="1124"/>
                     <entry key="1" type="xint" value="757"/>
-                    <entry key="2" type="xint" value="81"/>
-                    <entry key="3" type="xint" value="80"/>
+                    <entry key="2" type="xint" value="103"/>
+                    <entry key="3" type="xint" value="97"/>
                 </config>
             </config>
         </config>
@@ -560,7 +736,7 @@
     <config key="connections">
         <config key="connection_0">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="346"/>
+            <entry key="destID" type="xint" value="349"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -570,29 +746,29 @@
         </config>
         <config key="connection_1">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="349"/>
+            <entry key="destID" type="xint" value="331"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
-            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
-            <config key="ui_settings">
-                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
-            </config>
         </config>
         <config key="connection_2">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="331"/>
+            <entry key="destID" type="xint" value="330"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
         </config>
         <config key="connection_3">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="330"/>
+            <entry key="destID" type="xint" value="335"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
         </config>
         <config key="connection_4">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="335"/>
+            <entry key="destID" type="xint" value="334"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -602,7 +778,7 @@
         </config>
         <config key="connection_5">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="334"/>
+            <entry key="destID" type="xint" value="1530"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -611,8 +787,8 @@
             </config>
         </config>
         <config key="connection_6">
-            <entry key="sourceID" type="xint" value="330"/>
-            <entry key="destID" type="xint" value="351"/>
+            <entry key="sourceID" type="xint" value="217"/>
+            <entry key="destID" type="xint" value="1539"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -621,8 +797,8 @@
             </config>
         </config>
         <config key="connection_7">
-            <entry key="sourceID" type="xint" value="331"/>
-            <entry key="destID" type="xint" value="352"/>
+            <entry key="sourceID" type="xint" value="217"/>
+            <entry key="destID" type="xint" value="1548"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -631,28 +807,28 @@
             </config>
         </config>
         <config key="connection_8">
-            <entry key="sourceID" type="xint" value="334"/>
-            <entry key="destID" type="xint" value="330"/>
+            <entry key="sourceID" type="xint" value="330"/>
+            <entry key="destID" type="xint" value="351"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_9">
-            <entry key="sourceID" type="xint" value="335"/>
-            <entry key="destID" type="xint" value="331"/>
+            <entry key="sourceID" type="xint" value="331"/>
+            <entry key="destID" type="xint" value="352"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_10">
-            <entry key="sourceID" type="xint" value="336"/>
-            <entry key="destID" type="xint" value="337"/>
+            <entry key="sourceID" type="xint" value="334"/>
+            <entry key="destID" type="xint" value="330"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -661,8 +837,8 @@
             </config>
         </config>
         <config key="connection_11">
-            <entry key="sourceID" type="xint" value="337"/>
-            <entry key="destID" type="xint" value="338"/>
+            <entry key="sourceID" type="xint" value="335"/>
+            <entry key="destID" type="xint" value="331"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -671,8 +847,8 @@
             </config>
         </config>
         <config key="connection_12">
-            <entry key="sourceID" type="xint" value="338"/>
-            <entry key="destID" type="xint" value="339"/>
+            <entry key="sourceID" type="xint" value="336"/>
+            <entry key="destID" type="xint" value="337"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -681,8 +857,8 @@
             </config>
         </config>
         <config key="connection_13">
-            <entry key="sourceID" type="xint" value="339"/>
-            <entry key="destID" type="xint" value="340"/>
+            <entry key="sourceID" type="xint" value="337"/>
+            <entry key="destID" type="xint" value="1535"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -691,8 +867,8 @@
             </config>
         </config>
         <config key="connection_14">
-            <entry key="sourceID" type="xint" value="340"/>
-            <entry key="destID" type="xint" value="341"/>
+            <entry key="sourceID" type="xint" value="348"/>
+            <entry key="destID" type="xint" value="1528"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -701,8 +877,8 @@
             </config>
         </config>
         <config key="connection_15">
-            <entry key="sourceID" type="xint" value="341"/>
-            <entry key="destID" type="xint" value="342"/>
+            <entry key="sourceID" type="xint" value="348"/>
+            <entry key="destID" type="xint" value="1527"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -711,68 +887,64 @@
             </config>
         </config>
         <config key="connection_16">
-            <entry key="sourceID" type="xint" value="342"/>
-            <entry key="destID" type="xint" value="343"/>
+            <entry key="sourceID" type="xint" value="349"/>
+            <entry key="destID" type="xint" value="353"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_17">
-            <entry key="sourceID" type="xint" value="343"/>
-            <entry key="destID" type="xint" value="344"/>
+            <entry key="sourceID" type="xint" value="351"/>
+            <entry key="destID" type="xint" value="1527"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_18">
-            <entry key="sourceID" type="xint" value="344"/>
-            <entry key="destID" type="xint" value="372"/>
+            <entry key="sourceID" type="xint" value="352"/>
+            <entry key="destID" type="xint" value="1527"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="2"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_19">
-            <entry key="sourceID" type="xint" value="346"/>
-            <entry key="destID" type="xint" value="349"/>
+            <entry key="sourceID" type="xint" value="353"/>
+            <entry key="destID" type="xint" value="1528"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_20">
-            <entry key="sourceID" type="xint" value="348"/>
-            <entry key="destID" type="xint" value="1527"/>
+            <entry key="sourceID" type="xint" value="357"/>
+            <entry key="destID" type="xint" value="219"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_21">
-            <entry key="sourceID" type="xint" value="348"/>
-            <entry key="destID" type="xint" value="1528"/>
+            <entry key="sourceID" type="xint" value="1527"/>
+            <entry key="destID" type="xint" value="1536"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
-            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
-            <config key="ui_settings">
-                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
-            </config>
+            <entry key="destPort" type="xint" value="1"/>
         </config>
         <config key="connection_22">
-            <entry key="sourceID" type="xint" value="349"/>
-            <entry key="destID" type="xint" value="353"/>
+            <entry key="sourceID" type="xint" value="1527"/>
+            <entry key="destID" type="xint" value="1566"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -781,58 +953,58 @@
             </config>
         </config>
         <config key="connection_23">
-            <entry key="sourceID" type="xint" value="351"/>
+            <entry key="sourceID" type="xint" value="1528"/>
             <entry key="destID" type="xint" value="1527"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="3"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_24">
-            <entry key="sourceID" type="xint" value="352"/>
-            <entry key="destID" type="xint" value="1527"/>
+            <entry key="sourceID" type="xint" value="1530"/>
+            <entry key="destID" type="xint" value="1533"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="2"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_25">
-            <entry key="sourceID" type="xint" value="353"/>
-            <entry key="destID" type="xint" value="1528"/>
+            <entry key="sourceID" type="xint" value="1532"/>
+            <entry key="destID" type="xint" value="1534"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="2"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_26">
-            <entry key="sourceID" type="xint" value="357"/>
-            <entry key="destID" type="xint" value="219"/>
+            <entry key="sourceID" type="xint" value="1533"/>
+            <entry key="destID" type="xint" value="1532"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="2"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_27">
-            <entry key="sourceID" type="xint" value="372"/>
-            <entry key="destID" type="xint" value="373"/>
+            <entry key="sourceID" type="xint" value="1534"/>
+            <entry key="destID" type="xint" value="1537"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="2"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_28">
-            <entry key="sourceID" type="xint" value="373"/>
-            <entry key="destID" type="xint" value="374"/>
+            <entry key="sourceID" type="xint" value="1535"/>
+            <entry key="destID" type="xint" value="1540"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -841,38 +1013,38 @@
             </config>
         </config>
         <config key="connection_29">
-            <entry key="sourceID" type="xint" value="374"/>
-            <entry key="destID" type="xint" value="375"/>
-            <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="sourceID" type="xint" value="1536"/>
+            <entry key="destID" type="xint" value="1534"/>
+            <entry key="sourcePort" type="xint" value="2"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_30">
-            <entry key="sourceID" type="xint" value="375"/>
-            <entry key="destID" type="xint" value="376"/>
+            <entry key="sourceID" type="xint" value="1536"/>
+            <entry key="destID" type="xint" value="1537"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_31">
-            <entry key="sourceID" type="xint" value="376"/>
-            <entry key="destID" type="xint" value="377"/>
+            <entry key="sourceID" type="xint" value="1537"/>
+            <entry key="destID" type="xint" value="357"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="0"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_32">
-            <entry key="sourceID" type="xint" value="377"/>
-            <entry key="destID" type="xint" value="378"/>
+            <entry key="sourceID" type="xint" value="1539"/>
+            <entry key="destID" type="xint" value="1530"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -881,8 +1053,8 @@
             </config>
         </config>
         <config key="connection_33">
-            <entry key="sourceID" type="xint" value="378"/>
-            <entry key="destID" type="xint" value="1525"/>
+            <entry key="sourceID" type="xint" value="1540"/>
+            <entry key="destID" type="xint" value="1541"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -891,8 +1063,8 @@
             </config>
         </config>
         <config key="connection_34">
-            <entry key="sourceID" type="xint" value="1525"/>
-            <entry key="destID" type="xint" value="1526"/>
+            <entry key="sourceID" type="xint" value="1541"/>
+            <entry key="destID" type="xint" value="1542"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -901,30 +1073,180 @@
             </config>
         </config>
         <config key="connection_35">
-            <entry key="sourceID" type="xint" value="1526"/>
-            <entry key="destID" type="xint" value="348"/>
+            <entry key="sourceID" type="xint" value="1542"/>
+            <entry key="destID" type="xint" value="1543"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_36">
-            <entry key="sourceID" type="xint" value="1527"/>
-            <entry key="destID" type="xint" value="357"/>
+            <entry key="sourceID" type="xint" value="1543"/>
+            <entry key="destID" type="xint" value="1544"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
         <config key="connection_37">
-            <entry key="sourceID" type="xint" value="1528"/>
-            <entry key="destID" type="xint" value="1527"/>
+            <entry key="sourceID" type="xint" value="1544"/>
+            <entry key="destID" type="xint" value="1545"/>
             <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="3"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_38">
+            <entry key="sourceID" type="xint" value="1545"/>
+            <entry key="destID" type="xint" value="1546"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_39">
+            <entry key="sourceID" type="xint" value="1546"/>
+            <entry key="destID" type="xint" value="1555"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_40">
+            <entry key="sourceID" type="xint" value="1548"/>
+            <entry key="destID" type="xint" value="349"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_41">
+            <entry key="sourceID" type="xint" value="1555"/>
+            <entry key="destID" type="xint" value="1556"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_42">
+            <entry key="sourceID" type="xint" value="1556"/>
+            <entry key="destID" type="xint" value="1557"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_43">
+            <entry key="sourceID" type="xint" value="1557"/>
+            <entry key="destID" type="xint" value="1558"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_44">
+            <entry key="sourceID" type="xint" value="1558"/>
+            <entry key="destID" type="xint" value="1559"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_45">
+            <entry key="sourceID" type="xint" value="1559"/>
+            <entry key="destID" type="xint" value="1560"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_46">
+            <entry key="sourceID" type="xint" value="1560"/>
+            <entry key="destID" type="xint" value="1561"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_47">
+            <entry key="sourceID" type="xint" value="1561"/>
+            <entry key="destID" type="xint" value="1562"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_48">
+            <entry key="sourceID" type="xint" value="1562"/>
+            <entry key="destID" type="xint" value="1563"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_49">
+            <entry key="sourceID" type="xint" value="1563"/>
+            <entry key="destID" type="xint" value="1564"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_50">
+            <entry key="sourceID" type="xint" value="1564"/>
+            <entry key="destID" type="xint" value="1565"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="0"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_51">
+            <entry key="sourceID" type="xint" value="1565"/>
+            <entry key="destID" type="xint" value="348"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="1"/>
+            <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
+            <config key="ui_settings">
+                <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
+            </config>
+        </config>
+        <config key="connection_52">
+            <entry key="sourceID" type="xint" value="1566"/>
+            <entry key="destID" type="xint" value="1532"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>

From 475d66472db8f984387f1e7fa32992680f2d8403 Mon Sep 17 00:00:00 2001
From: Heriette <la.heriette@gmail.com>
Date: Tue, 5 Dec 2023 22:11:12 +0100
Subject: [PATCH 2/3] Volcano plot 1.0.7 - fixed double labelling

---
 Metanodes templates/Graphs/Volcano plot/.savedWithData        | 2 +-
 .../Graphs/Volcano plot/Component Input (#217)/settings.xml   | 2 +-
 .../Graphs/Volcano plot/R View _Table_ (#357)/settings.xml    | 2 +-
 Metanodes templates/Graphs/Volcano plot/settings.xml          | 4 ++--
 Metanodes templates/Graphs/Volcano plot/template.knime        | 2 +-
 5 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/Metanodes templates/Graphs/Volcano plot/.savedWithData b/Metanodes templates/Graphs/Volcano plot/.savedWithData
index d7cbb0a66..00d75e6cc 100644
--- a/Metanodes templates/Graphs/Volcano plot/.savedWithData	
+++ b/Metanodes templates/Graphs/Volcano plot/.savedWithData	
@@ -1,4 +1,4 @@
 Do not delete this file!
 This file serves to indicate that the workflow was written as part of the usual save routine (not exported).
 
-Workflow was last saved by user knimeuser on Mon Dec 04 12:12:38 CET 2023
\ No newline at end of file
+Workflow was last saved by user knimeuser on Tue Dec 05 18:58:18 CET 2023
\ No newline at end of file
diff --git a/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml
index 1e6ff8ccb..e8a7887ea 100644
--- a/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml	
@@ -31,7 +31,7 @@
             <entry key="array-size" type="xint" value="1"/>
             <entry key="0" type="xstring" value="Input table containing columns to be selected for visualization"/>
         </config>
-        <entry key="sub-node-description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.6 from 2023-12-04%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
+        <entry key="sub-node-description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.7 from 2023-12-05%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
     </config>
     <entry key="customDescription" type="xstring" value=""/>
     <entry key="state" type="xstring" value="IDLE"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml b/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml
index 35bea5e1e..2d47f5395 100644
--- a/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml	
@@ -12,7 +12,7 @@
         <entry key="Image background color" type="xstring" value="#ffffff"/>
         <entry key="Text point size" type="xint" value="12"/>
         <config key="R settings">
-            <entry key="script" type="xstring" value="# load required libraries%%00010library(ggplot2)%%00010library(dplyr)%%00010library(magrittr)%%00010library(ggrepel)%%00010library(gtable)%%00010library(grid)%%00010%%00010# categories for individual points in the scatter plot%%00010category_significant = 'Significant'%%00010category_significant_up = 'Up&amp;Sign.'%%00010category_significant_down = 'Down&amp;Sign.'%%00010category_notsignificant = 'Not sign.'%%00010category_ratio_up = 'Qual. up'%%00010category_ratio_down = 'Qual. down'%%00010%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_up &lt;- c(category_significant_up, category_ratio_up) else category_all_up &lt;- category_significant_up%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_down &lt;- c(category_significant_down, category_ratio_down) else category_all_up &lt;- category_significant_down%%00010%%00010# load table and perform -log10 transformation%%00010df &lt;- knime.in%%00010%%00010if(knime.flow.in[[&quot;zero_p_replacement&quot;]] != 0){%%00010%%00009zero_index &lt;- which(df$p == 0)%%00010%%00009df$p[zero_index] &lt;- knime.flow.in[[&quot;zero_p_replacement&quot;]]%%00010}%%00010%%00010if(knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009df &lt;- df %&gt;%%%00010%%00009%%00009mutate(p = -log10(p))%%00010}%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 0){%%00010%%00009df$Ratio &lt;- NA%%00010}%%00010%%00010p_threshold &lt;- -log10(knime.flow.in[[&quot;p_threshold&quot;]])%%00010logFC_threshold &lt;- knime.flow.in[[&quot;logFC_threshold&quot;]]%%00010%%00010# add column containing info about expression change%%00010df &lt;- df %&gt;%%%00010%%00009mutate(change = case_when(p &gt; p_threshold &amp; logFC &gt; logFC_threshold ~ category_significant_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; -logFC_threshold ~ category_significant_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; logFC_threshold &amp; logFC &gt; -logFC_threshold ~ category_significant,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &gt; 1 ~ category_ratio_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &lt; -1 ~ category_ratio_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 TRUE ~ category_notsignificant))%%00010%%00010# get number of proteins in each category%%00010df_summary &lt;- df %&gt;%%%00010%%00009group_by(change) %&gt;%%%00010%%00009summarize(n = n()) %&gt;%%%00010%%00009as.data.frame()%%00010%%00010all_changes &lt;- c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down)%%00010observed_changes &lt;- df_summary$change%%00010not_observed_changes &lt;- setdiff(all_changes, observed_changes)%%00010%%00010if(length(not_observed_changes) &gt; 0){%%00010%%00009df_summary_append &lt;- data.frame(change = not_observed_changes,%%00010%%00009%%00009%%00009%%00009%%00009%%00009%%00009  n = rep(0, times = length(not_observed_changes)))%%00010%%00009df_summary &lt;- rbind(df_summary, df_summary_append)%%00010}%%00010%%00010# add number of observed values in each category to the dataframe%%00010df &lt;- df %&gt;%%%00010%%00009mutate(count = case_when(change == category_significant_up ~ df_summary$n[which(df_summary$change == category_significant_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant_down ~ df_summary$n[which(df_summary$change == category_significant_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant ~ df_summary$n[which(df_summary$change == category_significant)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_up ~ df_summary$n[which(df_summary$change == category_ratio_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_down ~ df_summary$n[which(df_summary$change == category_ratio_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009TRUE ~ df_summary$n[which(df_summary$change == category_notsignificant)])) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, count, &quot;)&quot;),%%00010%%00009%%00009  color = case_when(change == category_significant_up ~ &quot;olivedrab3&quot;,%%00010%%00009%%00009                    change == category_significant_down ~ &quot;firebrick2&quot;,%%00010%%00009%%00009                    change == category_significant ~ &quot;goldenrod2&quot;,%%00010%%00009%%00009                    change == category_ratio_up ~ &quot;lightseagreen&quot;, %%00010%%00009%%00009                    change == category_ratio_down ~ &quot;maroon1&quot;,%%00010%%00009%%00009                    TRUE ~ &quot;grey40&quot;))%%00010%%00009%%00009                    %%00010if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 0){%%00010%%00009df$sorting &lt;- abs(df$logFC)%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 1){%%00010%%00009df$sorting &lt;- df$p%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 2){%%00010%%00009df$sorting &lt;- df$p*abs(df$logFC)%%00010}%%00010%%00009%%00009                    %%00010df &lt;- df %&gt;%%%00010%%00009arrange(desc(sorting))%%00009   %%00010%%00010# create values for plot legend%%00010df$change &lt;- factor(df$change, levels = c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))%%00010df$color &lt;- factor(df$color, levels = c(&quot;olivedrab3&quot;, &quot;firebrick2&quot;, &quot;goldenrod2&quot;, &quot;grey40&quot;, &quot;lightseagreen&quot;, 'maroon1'))%%00010%%00010df_summary &lt;- df_summary %&gt;%%%00010%%00009arrange(match(change, c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, n, &quot;)&quot;)) %&gt;%%%00010%%00009filter(n &gt; 0)%%00010%%00010# coalesce ratio and LIMMA columns%%00010df &lt;- df |&gt;%%00010%%00009mutate(facet = ifelse(is.na(Ratio), 'LIMMA', 'Ratio')) |&gt;%%00010%%00009mutate(logFC = coalesce(logFC, Ratio))%%00010%%00010df$p[which(is.na(df$p) &amp; df$facet == 'Ratio')] &lt;- -1%%00010%%00010# create a df for labelling%%00010m &lt;- matrix(0, ncol = ncol(df), nrow = 0)%%00010df_label &lt;- as.data.frame(m)%%00010colnames(df_label) &lt;- colnames(df)%%00010top_n &lt;- knime.flow.in[[&quot;top_n&quot;]]%%00010top_n_qual &lt;- knime.flow.in[[&quot;top_n_qual&quot;]]%%00010%%00010# get all rows of points that should be labelled%%00010if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 1){ # all significant%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] %in% c(0,1)){ # ignore thresholds &amp; all changed%%00010%%00009%%00009temp &lt;- df[df$change %in% c(category_all_up, category_all_down),]%%00010%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){ # up%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_up,]%%00010%%00009} else {%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_down,]%%00010%%00009}%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00009%%00010} else if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 2){ # top n%%00010%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) {%%00010%%00009%%00009%%00009df_qual &lt;- df |&gt;%%00010%%00009%%00009%%00009%%00009filter(facet == 'Ratio') |&gt;%%00010%%00009%%00009%%00009%%00009mutate(logFC_abs = abs(logFC)) |&gt;%%00010%%00009%%00009%%00009%%00009arrange(desc(logFC_abs)) |&gt;%%00010%%00009%%00009%%00009%%00009select(-logFC_abs)%%00010%%00009}%%00010%%00009%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 0) { # ignore thresholds%%00010%%00009%%00009if(top_n &gt; nrow(df)) top_n &lt;- nrow(df)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- df[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(df_qual)) top_n_qual &lt;- nrow(df_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, df_qual[1:top_n_qual,])%%00009%%00010%%00009} else {%%00010%%00009%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 1){ # all changed%%00010%%00009%%00009%%00009temp &lt;- df[df$change %in% c(category_significant_up, category_significant_down),]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change %in% c(category_ratio_up, category_ratio_down),]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_up,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_up,]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 3){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_down,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_down,]%%00010%%00009%%00009}%%00010%%00009%%00009%%00010%%00009%%00009if(top_n &gt; nrow(temp)) top_n &lt;- nrow(temp)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- temp[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(temp_qual)) top_n_qual &lt;- nrow(temp_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, temp_qual[1:top_n_qual,])%%00010%%00009}%%00010%%00009%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010}%%00010%%00010if(trimws(knime.flow.in[[&quot;manual_points&quot;]]) != &quot;&quot;){%%00010%%00009label_proteins &lt;- trimws(unlist(strsplit(knime.flow.in[[&quot;manual_points&quot;]], knime.flow.in[[&quot;delim&quot;]])))%%00010%%00009i_proteins &lt;- which(df$ID %in% label_proteins)%%00010%%00009temp &lt;- df[i_proteins,]%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010}%%00010%%00010# initiate variables for manual breaks%%00010max_break_y &lt;- c(max(df$p, na.rm = TRUE), p_threshold)%%00010max_break_x &lt;- c(max(df$logFC, na.rm = TRUE), logFC_threshold)%%00010%%00010# manual axis limits%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009x_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_x_limits&quot;]], &quot;;&quot;))%%00010%%00009x_min &lt;- as.numeric(x_limits[1])%%00010%%00009x_max &lt;- as.numeric(x_limits[2])%%00010%%00009max_break_x &lt;- c(max_break_x, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009y_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_y_limits&quot;]], &quot;;&quot;))%%00010%%00009y_min &lt;- as.numeric(y_limits[1])%%00010%%00009y_max &lt;- as.numeric(y_limits[2])%%00010%%00009max_break_y &lt;- c(max_break_y, y_max)%%00010}%%00010%%00010# modify y axis label%%00010if (knime.flow.in[[&quot;y_axis_label&quot;]] == &quot;&quot;){%%00010%%00009if (knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009%%00009y_label &lt;- paste(&quot;-log&quot;, knime.flow.in[[&quot;p_value_column&quot;]])%%00010%%00009} else {%%00010%%00009%%00009y_label &lt;- knime.flow.in[[&quot;p_value_column&quot;]]%%00010%%00009}%%00010} else if (startsWith(knime.flow.in[[&quot;y_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009y_raw &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010%%00009y_raw &lt;- substr(y_raw, start = 12, stop = nchar(y_raw)-1)%%00010%%00009y_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, y_raw)%%00010%%00009y_label &lt;- parse(text = y_raw)%%00010} else {%%00010%%00009y_label &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010}%%00010%%00010# modify x axis label%%00010if (knime.flow.in[[&quot;x_axis_label&quot;]] == &quot;&quot;){%%00010%%00009x_label &lt;- knime.flow.in[[&quot;logFC_column&quot;]]%%00010} else if (startsWith(knime.flow.in[[&quot;x_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009x_raw &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010%%00009x_raw &lt;- substr(x_raw, start = 12, stop = nchar(x_raw)-1)%%00010%%00009x_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, x_raw)%%00010%%00009x_label &lt;- parse(text = x_raw)%%00010} else {%%00010%%00009x_label &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010}%%00010%%00010# calculate nudges%%00010if(logFC_threshold &gt; max(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_max &lt;- logFC_threshold%%00010} else {%%00010%%00009x_nudge_max &lt;- max(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010if(-logFC_threshold &lt; min(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_min &lt;- -logFC_threshold%%00010} else {%%00010%%00009x_nudge_min &lt;- min(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010x_nudge &lt;- (x_nudge_max - x_nudge_min) * 0.04%%00010%%00010if(p_threshold &gt; max(df$p, na.rm = TRUE)) {%%00010%%00009y_nudge &lt;- p_threshold * 0.04%%00010} else {%%00010%%00009y_nudge &lt;- max(df$p, na.rm = TRUE) * 0.04%%00010}%%00010%%00010if(nrow(df_label) &gt; 0) {%%00010%%00009df_label &lt;- mutate(df_label, nudge = ifelse(logFC &gt; 0, x_nudge, -x_nudge))%%00010}%%00010%%00010# get major breaks%%00010max_break_y &lt;- max(max_break_y)%%00010five_breaks &lt;- max_break_y / 5%%00010break_length &lt;- round(five_breaks/0.5)*0.5%%00010breaks &lt;- 0%%00010while(breaks[length(breaks)] &lt;= max_break_y) breaks &lt;- c(breaks, breaks[length(breaks)] + break_length)%%00010%%00010# plot the volcano plot%%00010p &lt;- df |&gt;%%00010%%00009ggplot() +%%00010%%00009geom_point(df, mapping = aes(x = logFC, y = p, color = color), size = 2) +%%00010%%00009scale_color_identity(guide = &quot;legend&quot;, labels = df_summary$full_change) +%%00010%%00009labs(title = knime.flow.in[[&quot;title&quot;]],%%00010%%00009%%00009subtitle = knime.flow.in[[&quot;full_subtitle&quot;]],%%00010%%00009%%00009y = y_label,%%00010%%00009%%00009x = x_label) +%%00010%%00009scale_y_continuous(breaks = c(-1, breaks,5),%%00010%%00009%%00009%%00009%%00009    labels = ~ifelse(.x == -1, 'qual.', .x)) +%%00010%%00009geom_hline(data = df %&gt;% filter(facet == 'LIMMA'), aes(yintercept = p_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = -logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009theme_bw(base_size = 14) +%%00010%%00009theme(plot.title = element_text(face = &quot;bold&quot;, hjust = 0.5),%%00010%%00009%%00009 legend.title = element_blank(),%%00010%%00009%%00009 #legend.justification = c(1.05, -0.1), %%00010%%00009%%00009 legend.position = &quot;bottom&quot;,%%00010%%00009%%00009 legend.box.background = element_rect(color = &quot;grey20&quot;, size = 1),%%00010%%00009%%00009 panel.grid.minor = element_blank(),%%00010%%00009%%00009 strip.background = element_blank(),%%00010%%00009%%00009 strip.text = element_blank()) +%%00010%%00009facet_grid(facet~., space = 'free_y', scales = 'free_y')%%00010%%00010if(nrow(df_label) &gt; 0){%%00010%%00009p &lt;- p +%%00010%%00009%%00009geom_text_repel(df_label, mapping = aes(x = logFC, y = p, label = ID), %%00010%%00009%%00009%%00009%%00009%%00009 inherit.aes = FALSE,%%00010%%00009%%00009%%00009%%00009%%00009 min.segment.length = 0,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_x = df_label$nudge,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_y = y_nudge,%%00010%%00009%%00009%%00009%%00009%%00009 max.time = 2,%%00010%%00009%%00009%%00009%%00009%%00009 max.overlaps = nrow(df_label),%%00010%%00009%%00009%%00009%%00009%%00009 force = 1)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009xlim(x_min, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009ylim(y_min, y_max)%%00010}%%00010%%00010# remove y axis labelling from the bottom facet%%00010p_tab &lt;- ggplot_gtable(ggplot_build(p))%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 1) p_tab$heights[9] &lt;- p_tab$heights[9]*3%%00010%%00010grid.newpage()%%00010grid.draw(p_tab)%%00010"/>
+            <entry key="script" type="xstring" value="# load required libraries%%00010library(ggplot2)%%00010library(dplyr)%%00010library(magrittr)%%00010library(ggrepel)%%00010library(gtable)%%00010library(grid)%%00010%%00010# categories for individual points in the scatter plot%%00010category_significant = 'Significant'%%00010category_significant_up = 'Up&amp;Sign.'%%00010category_significant_down = 'Down&amp;Sign.'%%00010category_notsignificant = 'Not sign.'%%00010category_ratio_up = 'Qual. up'%%00010category_ratio_down = 'Qual. down'%%00010%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_up &lt;- c(category_significant_up, category_ratio_up) else category_all_up &lt;- category_significant_up%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_down &lt;- c(category_significant_down, category_ratio_down) else category_all_up &lt;- category_significant_down%%00010%%00010# load table and perform -log10 transformation%%00010df &lt;- knime.in%%00010%%00010if(knime.flow.in[[&quot;zero_p_replacement&quot;]] != 0){%%00010%%00009zero_index &lt;- which(df$p == 0)%%00010%%00009df$p[zero_index] &lt;- knime.flow.in[[&quot;zero_p_replacement&quot;]]%%00010}%%00010%%00010if(knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009df &lt;- df %&gt;%%%00010%%00009%%00009mutate(p = -log10(p))%%00010}%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 0){%%00010%%00009df$Ratio &lt;- NA%%00010}%%00010%%00010p_threshold &lt;- -log10(knime.flow.in[[&quot;p_threshold&quot;]])%%00010logFC_threshold &lt;- knime.flow.in[[&quot;logFC_threshold&quot;]]%%00010%%00010# add column containing info about expression change%%00010df &lt;- df %&gt;%%%00010%%00009mutate(change = case_when(p &gt; p_threshold &amp; logFC &gt; logFC_threshold ~ category_significant_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; -logFC_threshold ~ category_significant_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; logFC_threshold &amp; logFC &gt; -logFC_threshold ~ category_significant,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &gt; 1 ~ category_ratio_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &lt; -1 ~ category_ratio_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 TRUE ~ category_notsignificant))%%00010%%00010# get number of proteins in each category%%00010df_summary &lt;- df %&gt;%%%00010%%00009group_by(change) %&gt;%%%00010%%00009summarize(n = n()) %&gt;%%%00010%%00009as.data.frame()%%00010%%00010all_changes &lt;- c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down)%%00010observed_changes &lt;- df_summary$change%%00010not_observed_changes &lt;- setdiff(all_changes, observed_changes)%%00010%%00010if(length(not_observed_changes) &gt; 0){%%00010%%00009df_summary_append &lt;- data.frame(change = not_observed_changes,%%00010%%00009%%00009%%00009%%00009%%00009%%00009%%00009  n = rep(0, times = length(not_observed_changes)))%%00010%%00009df_summary &lt;- rbind(df_summary, df_summary_append)%%00010}%%00010%%00010# add number of observed values in each category to the dataframe%%00010df &lt;- df %&gt;%%%00010%%00009mutate(count = case_when(change == category_significant_up ~ df_summary$n[which(df_summary$change == category_significant_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant_down ~ df_summary$n[which(df_summary$change == category_significant_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant ~ df_summary$n[which(df_summary$change == category_significant)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_up ~ df_summary$n[which(df_summary$change == category_ratio_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_down ~ df_summary$n[which(df_summary$change == category_ratio_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009TRUE ~ df_summary$n[which(df_summary$change == category_notsignificant)])) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, count, &quot;)&quot;),%%00010%%00009%%00009  color = case_when(change == category_significant_up ~ &quot;olivedrab3&quot;,%%00010%%00009%%00009                    change == category_significant_down ~ &quot;firebrick2&quot;,%%00010%%00009%%00009                    change == category_significant ~ &quot;goldenrod2&quot;,%%00010%%00009%%00009                    change == category_ratio_up ~ &quot;lightseagreen&quot;, %%00010%%00009%%00009                    change == category_ratio_down ~ &quot;maroon1&quot;,%%00010%%00009%%00009                    TRUE ~ &quot;grey40&quot;))%%00010%%00009%%00009                    %%00010if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 0){%%00010%%00009df$sorting &lt;- abs(df$logFC)%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 1){%%00010%%00009df$sorting &lt;- df$p%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 2){%%00010%%00009df$sorting &lt;- df$p*abs(df$logFC)%%00010}%%00010%%00009%%00009                    %%00010df &lt;- df %&gt;%%%00010%%00009arrange(desc(sorting))%%00009   %%00010%%00010# create values for plot legend%%00010df$change &lt;- factor(df$change, levels = c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))%%00010df$color &lt;- factor(df$color, levels = c(&quot;olivedrab3&quot;, &quot;firebrick2&quot;, &quot;goldenrod2&quot;, &quot;grey40&quot;, &quot;lightseagreen&quot;, 'maroon1'))%%00010%%00010df_summary &lt;- df_summary %&gt;%%%00010%%00009arrange(match(change, c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, n, &quot;)&quot;)) %&gt;%%%00010%%00009filter(n &gt; 0)%%00010%%00010# coalesce ratio and LIMMA columns%%00010df &lt;- df |&gt;%%00010%%00009mutate(facet = ifelse(is.na(Ratio), 'LIMMA', 'Ratio')) |&gt;%%00010%%00009mutate(logFC = coalesce(logFC, Ratio))%%00010%%00010df$p[which(is.na(df$p) &amp; df$facet == 'Ratio')] &lt;- -1%%00010%%00010# create a df for labelling%%00010m &lt;- matrix(0, ncol = ncol(df), nrow = 0)%%00010df_label &lt;- as.data.frame(m)%%00010colnames(df_label) &lt;- colnames(df)%%00010top_n &lt;- knime.flow.in[[&quot;top_n&quot;]]%%00010top_n_qual &lt;- knime.flow.in[[&quot;top_n_qual&quot;]]%%00010%%00010# get all rows of points that should be labelled%%00010if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 1){ # all significant%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] %in% c(0,1)){ # ignore thresholds &amp; all changed%%00010%%00009%%00009temp &lt;- df[df$change %in% c(category_all_up, category_all_down),]%%00010%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){ # up%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_up,]%%00010%%00009} else {%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_down,]%%00010%%00009}%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00009%%00010} else if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 2){ # top n%%00010%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) {%%00010%%00009%%00009%%00009df_qual &lt;- df |&gt;%%00010%%00009%%00009%%00009%%00009filter(facet == 'Ratio') |&gt;%%00010%%00009%%00009%%00009%%00009mutate(logFC_abs = abs(logFC)) |&gt;%%00010%%00009%%00009%%00009%%00009arrange(desc(logFC_abs)) |&gt;%%00010%%00009%%00009%%00009%%00009select(-logFC_abs)%%00010%%00009}%%00010%%00009%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 0) { # ignore thresholds%%00010%%00009%%00009if(top_n &gt; nrow(df)) top_n &lt;- nrow(df)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- df[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(df_qual)) top_n_qual &lt;- nrow(df_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, df_qual[1:top_n_qual,])%%00009%%00010%%00009} else {%%00010%%00009%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 1){ # all changed%%00010%%00009%%00009%%00009temp &lt;- df[df$change %in% c(category_significant_up, category_significant_down),]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change %in% c(category_ratio_up, category_ratio_down),]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_up,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_up,]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 3){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_down,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_down,]%%00010%%00009%%00009}%%00010%%00009%%00009%%00010%%00009%%00009if(top_n &gt; nrow(temp)) top_n &lt;- nrow(temp)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- temp[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(temp_qual)) top_n_qual &lt;- nrow(temp_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, temp_qual[1:top_n_qual,])%%00010%%00009}%%00010%%00009%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010%%00009df_label &lt;- distinct(df_label)%%00010}%%00010%%00010if(trimws(knime.flow.in[[&quot;manual_points&quot;]]) != &quot;&quot;){%%00010%%00009label_proteins &lt;- trimws(unlist(strsplit(knime.flow.in[[&quot;manual_points&quot;]], knime.flow.in[[&quot;delim&quot;]])))%%00010%%00009i_proteins &lt;- which(df$ID %in% label_proteins)%%00010%%00009temp &lt;- df[i_proteins,]%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010%%00009df_label &lt;- distinct(df_label)%%00010}%%00010%%00010# initiate variables for manual breaks%%00010max_break_y &lt;- c(max(df$p, na.rm = TRUE), p_threshold)%%00010max_break_x &lt;- c(max(df$logFC, na.rm = TRUE), logFC_threshold)%%00010%%00010# manual axis limits%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009x_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_x_limits&quot;]], &quot;;&quot;))%%00010%%00009x_min &lt;- as.numeric(x_limits[1])%%00010%%00009x_max &lt;- as.numeric(x_limits[2])%%00010%%00009max_break_x &lt;- c(max_break_x, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009y_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_y_limits&quot;]], &quot;;&quot;))%%00010%%00009y_min &lt;- as.numeric(y_limits[1])%%00010%%00009y_max &lt;- as.numeric(y_limits[2])%%00010%%00009max_break_y &lt;- c(max_break_y, y_max)%%00010}%%00010%%00010# modify y axis label%%00010if (knime.flow.in[[&quot;y_axis_label&quot;]] == &quot;&quot;){%%00010%%00009if (knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009%%00009y_label &lt;- paste(&quot;-log&quot;, knime.flow.in[[&quot;p_value_column&quot;]])%%00010%%00009} else {%%00010%%00009%%00009y_label &lt;- knime.flow.in[[&quot;p_value_column&quot;]]%%00010%%00009}%%00010} else if (startsWith(knime.flow.in[[&quot;y_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009y_raw &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010%%00009y_raw &lt;- substr(y_raw, start = 12, stop = nchar(y_raw)-1)%%00010%%00009y_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, y_raw)%%00010%%00009y_label &lt;- parse(text = y_raw)%%00010} else {%%00010%%00009y_label &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010}%%00010%%00010# modify x axis label%%00010if (knime.flow.in[[&quot;x_axis_label&quot;]] == &quot;&quot;){%%00010%%00009x_label &lt;- knime.flow.in[[&quot;logFC_column&quot;]]%%00010} else if (startsWith(knime.flow.in[[&quot;x_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009x_raw &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010%%00009x_raw &lt;- substr(x_raw, start = 12, stop = nchar(x_raw)-1)%%00010%%00009x_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, x_raw)%%00010%%00009x_label &lt;- parse(text = x_raw)%%00010} else {%%00010%%00009x_label &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010}%%00010%%00010# calculate nudges%%00010if(logFC_threshold &gt; max(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_max &lt;- logFC_threshold%%00010} else {%%00010%%00009x_nudge_max &lt;- max(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010if(-logFC_threshold &lt; min(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_min &lt;- -logFC_threshold%%00010} else {%%00010%%00009x_nudge_min &lt;- min(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010x_nudge &lt;- (x_nudge_max - x_nudge_min) * 0.04%%00010%%00010if(p_threshold &gt; max(df$p, na.rm = TRUE)) {%%00010%%00009y_nudge &lt;- p_threshold * 0.04%%00010} else {%%00010%%00009y_nudge &lt;- max(df$p, na.rm = TRUE) * 0.04%%00010}%%00010%%00010if(nrow(df_label) &gt; 0) {%%00010%%00009df_label &lt;- mutate(df_label, nudge = ifelse(logFC &gt; 0, x_nudge, -x_nudge))%%00010}%%00010%%00010# get major breaks%%00010max_break_y &lt;- max(max_break_y)%%00010five_breaks &lt;- max_break_y / 5%%00010break_length &lt;- round(five_breaks/0.5)*0.5%%00010breaks &lt;- 0%%00010while(breaks[length(breaks)] &lt;= max_break_y) breaks &lt;- c(breaks, breaks[length(breaks)] + break_length)%%00010%%00010# plot the volcano plot%%00010p &lt;- df |&gt;%%00010%%00009ggplot() +%%00010%%00009geom_point(df, mapping = aes(x = logFC, y = p, color = color), size = 2) +%%00010%%00009scale_color_identity(guide = &quot;legend&quot;, labels = df_summary$full_change) +%%00010%%00009labs(title = knime.flow.in[[&quot;title&quot;]],%%00010%%00009%%00009subtitle = knime.flow.in[[&quot;full_subtitle&quot;]],%%00010%%00009%%00009y = y_label,%%00010%%00009%%00009x = x_label) +%%00010%%00009scale_y_continuous(breaks = c(-1, breaks,5),%%00010%%00009%%00009%%00009%%00009    labels = ~ifelse(.x == -1, 'qual.', .x)) +%%00010%%00009geom_hline(data = df %&gt;% filter(facet == 'LIMMA'), aes(yintercept = p_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = -logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009theme_bw(base_size = 14) +%%00010%%00009theme(plot.title = element_text(face = &quot;bold&quot;, hjust = 0.5),%%00010%%00009%%00009 legend.title = element_blank(),%%00010%%00009%%00009 #legend.justification = c(1.05, -0.1), %%00010%%00009%%00009 legend.position = &quot;bottom&quot;,%%00010%%00009%%00009 legend.box.background = element_rect(color = &quot;grey20&quot;, size = 1),%%00010%%00009%%00009 panel.grid.minor = element_blank(),%%00010%%00009%%00009 strip.background = element_blank(),%%00010%%00009%%00009 strip.text = element_blank()) +%%00010%%00009facet_grid(facet~., space = 'free_y', scales = 'free_y')%%00010%%00010if(nrow(df_label) &gt; 0){%%00010%%00009p &lt;- p +%%00010%%00009%%00009geom_text_repel(df_label, mapping = aes(x = logFC, y = p, label = ID), %%00010%%00009%%00009%%00009%%00009%%00009 inherit.aes = FALSE,%%00010%%00009%%00009%%00009%%00009%%00009 min.segment.length = 0,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_x = df_label$nudge,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_y = y_nudge,%%00010%%00009%%00009%%00009%%00009%%00009 max.time = 2,%%00010%%00009%%00009%%00009%%00009%%00009 max.overlaps = nrow(df_label),%%00010%%00009%%00009%%00009%%00009%%00009 force = 1)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009xlim(x_min, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009ylim(y_min, y_max)%%00010}%%00010%%00010# remove y axis labelling from the bottom facet%%00010p_tab &lt;- ggplot_gtable(ggplot_build(p))%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 1) p_tab$heights[9] &lt;- p_tab$heights[9]*3%%00010%%00010grid.newpage()%%00010grid.draw(p_tab)%%00010"/>
             <entry key="templateUUID" type="xstring" isnull="true" value=""/>
             <entry key="version" type="xstring" value="version 1.x"/>
             <entry key="Output non numbers (NaN, Inf, -Inf) as missing cells" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/settings.xml b/Metanodes templates/Graphs/Volcano plot/settings.xml
index c50ba6429..ae653df56 100644
--- a/Metanodes templates/Graphs/Volcano plot/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/settings.xml	
@@ -43,7 +43,7 @@
         </config>
     </config>
     <config key="metadata">
-        <entry key="description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.6 from 2023-12-04%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
+        <entry key="description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.7 from 2023-12-05%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
         <config key="inports">
             <config key="inport_0">
                 <entry key="name" type="xstring" value="Input data"/>
@@ -61,7 +61,7 @@
     </config>
     <config key="workflow_template_information">
         <entry key="role" type="xstring" value="Template"/>
-        <entry key="timestamp" type="xstring" value="2023-12-04 12:12:37 +0100"/>
+        <entry key="timestamp" type="xstring" value="2023-12-05 18:58:18 +0100"/>
         <entry key="sourceURI" type="xstring" isnull="true" value=""/>
         <entry key="templateType" type="xstring" value="SubNode"/>
     </config>
diff --git a/Metanodes templates/Graphs/Volcano plot/template.knime b/Metanodes templates/Graphs/Volcano plot/template.knime
index 2ca9fd5ce..312db02e0 100644
--- a/Metanodes templates/Graphs/Volcano plot/template.knime	
+++ b/Metanodes templates/Graphs/Volcano plot/template.knime	
@@ -5,7 +5,7 @@
     <entry key="version" type="xstring" value="4.1.0"/>
     <config key="workflow_template_information">
         <entry key="role" type="xstring" value="Template"/>
-        <entry key="timestamp" type="xstring" value="2023-12-04 12:12:37 +0100"/>
+        <entry key="timestamp" type="xstring" value="2023-12-05 18:58:18 +0100"/>
         <entry key="sourceURI" type="xstring" isnull="true" value=""/>
         <entry key="templateType" type="xstring" value="SubNode"/>
     </config>

From aaa7fa2c74d6d91cfe480d6c3701459655cd9e9c Mon Sep 17 00:00:00 2001
From: Heriette <la.heriette@gmail.com>
Date: Mon, 8 Jan 2024 14:56:33 +0100
Subject: [PATCH 3/3] Volcano plot 1.0.8 - fixed error with qualitative change
 labelling

---
 .../Graphs/Volcano plot/.savedWithData        |  2 +-
 .../Component Input (#217)/settings.xml       |  2 +-
 .../R View _Table_ (#357)/settings.xml        |  2 +-
 .../Graphs/Volcano plot/settings.xml          |  4 ++--
 .../Graphs/Volcano plot/template.knime        |  2 +-
 .../Graphs/Volcano plot/workflow.knime        | 24 +++++++++----------
 6 files changed, 18 insertions(+), 18 deletions(-)

diff --git a/Metanodes templates/Graphs/Volcano plot/.savedWithData b/Metanodes templates/Graphs/Volcano plot/.savedWithData
index 00d75e6cc..4838f3ba3 100644
--- a/Metanodes templates/Graphs/Volcano plot/.savedWithData	
+++ b/Metanodes templates/Graphs/Volcano plot/.savedWithData	
@@ -1,4 +1,4 @@
 Do not delete this file!
 This file serves to indicate that the workflow was written as part of the usual save routine (not exported).
 
-Workflow was last saved by user knimeuser on Tue Dec 05 18:58:18 CET 2023
\ No newline at end of file
+Workflow was last saved by user knimeuser on Mon Jan 08 14:53:04 CET 2024
\ No newline at end of file
diff --git a/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml b/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml
index e8a7887ea..8e463ee01 100644
--- a/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/Component Input (#217)/settings.xml	
@@ -31,7 +31,7 @@
             <entry key="array-size" type="xint" value="1"/>
             <entry key="0" type="xstring" value="Input table containing columns to be selected for visualization"/>
         </config>
-        <entry key="sub-node-description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.7 from 2023-12-05%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
+        <entry key="sub-node-description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.8 from 2024-01-08%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
     </config>
     <entry key="customDescription" type="xstring" value=""/>
     <entry key="state" type="xstring" value="IDLE"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml b/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml
index 2d47f5395..5eb33ea84 100644
--- a/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/R View _Table_ (#357)/settings.xml	
@@ -12,7 +12,7 @@
         <entry key="Image background color" type="xstring" value="#ffffff"/>
         <entry key="Text point size" type="xint" value="12"/>
         <config key="R settings">
-            <entry key="script" type="xstring" value="# load required libraries%%00010library(ggplot2)%%00010library(dplyr)%%00010library(magrittr)%%00010library(ggrepel)%%00010library(gtable)%%00010library(grid)%%00010%%00010# categories for individual points in the scatter plot%%00010category_significant = 'Significant'%%00010category_significant_up = 'Up&amp;Sign.'%%00010category_significant_down = 'Down&amp;Sign.'%%00010category_notsignificant = 'Not sign.'%%00010category_ratio_up = 'Qual. up'%%00010category_ratio_down = 'Qual. down'%%00010%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_up &lt;- c(category_significant_up, category_ratio_up) else category_all_up &lt;- category_significant_up%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_down &lt;- c(category_significant_down, category_ratio_down) else category_all_up &lt;- category_significant_down%%00010%%00010# load table and perform -log10 transformation%%00010df &lt;- knime.in%%00010%%00010if(knime.flow.in[[&quot;zero_p_replacement&quot;]] != 0){%%00010%%00009zero_index &lt;- which(df$p == 0)%%00010%%00009df$p[zero_index] &lt;- knime.flow.in[[&quot;zero_p_replacement&quot;]]%%00010}%%00010%%00010if(knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009df &lt;- df %&gt;%%%00010%%00009%%00009mutate(p = -log10(p))%%00010}%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 0){%%00010%%00009df$Ratio &lt;- NA%%00010}%%00010%%00010p_threshold &lt;- -log10(knime.flow.in[[&quot;p_threshold&quot;]])%%00010logFC_threshold &lt;- knime.flow.in[[&quot;logFC_threshold&quot;]]%%00010%%00010# add column containing info about expression change%%00010df &lt;- df %&gt;%%%00010%%00009mutate(change = case_when(p &gt; p_threshold &amp; logFC &gt; logFC_threshold ~ category_significant_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; -logFC_threshold ~ category_significant_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; logFC_threshold &amp; logFC &gt; -logFC_threshold ~ category_significant,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &gt; 1 ~ category_ratio_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &lt; -1 ~ category_ratio_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 TRUE ~ category_notsignificant))%%00010%%00010# get number of proteins in each category%%00010df_summary &lt;- df %&gt;%%%00010%%00009group_by(change) %&gt;%%%00010%%00009summarize(n = n()) %&gt;%%%00010%%00009as.data.frame()%%00010%%00010all_changes &lt;- c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down)%%00010observed_changes &lt;- df_summary$change%%00010not_observed_changes &lt;- setdiff(all_changes, observed_changes)%%00010%%00010if(length(not_observed_changes) &gt; 0){%%00010%%00009df_summary_append &lt;- data.frame(change = not_observed_changes,%%00010%%00009%%00009%%00009%%00009%%00009%%00009%%00009  n = rep(0, times = length(not_observed_changes)))%%00010%%00009df_summary &lt;- rbind(df_summary, df_summary_append)%%00010}%%00010%%00010# add number of observed values in each category to the dataframe%%00010df &lt;- df %&gt;%%%00010%%00009mutate(count = case_when(change == category_significant_up ~ df_summary$n[which(df_summary$change == category_significant_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant_down ~ df_summary$n[which(df_summary$change == category_significant_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant ~ df_summary$n[which(df_summary$change == category_significant)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_up ~ df_summary$n[which(df_summary$change == category_ratio_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_down ~ df_summary$n[which(df_summary$change == category_ratio_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009TRUE ~ df_summary$n[which(df_summary$change == category_notsignificant)])) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, count, &quot;)&quot;),%%00010%%00009%%00009  color = case_when(change == category_significant_up ~ &quot;olivedrab3&quot;,%%00010%%00009%%00009                    change == category_significant_down ~ &quot;firebrick2&quot;,%%00010%%00009%%00009                    change == category_significant ~ &quot;goldenrod2&quot;,%%00010%%00009%%00009                    change == category_ratio_up ~ &quot;lightseagreen&quot;, %%00010%%00009%%00009                    change == category_ratio_down ~ &quot;maroon1&quot;,%%00010%%00009%%00009                    TRUE ~ &quot;grey40&quot;))%%00010%%00009%%00009                    %%00010if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 0){%%00010%%00009df$sorting &lt;- abs(df$logFC)%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 1){%%00010%%00009df$sorting &lt;- df$p%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 2){%%00010%%00009df$sorting &lt;- df$p*abs(df$logFC)%%00010}%%00010%%00009%%00009                    %%00010df &lt;- df %&gt;%%%00010%%00009arrange(desc(sorting))%%00009   %%00010%%00010# create values for plot legend%%00010df$change &lt;- factor(df$change, levels = c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))%%00010df$color &lt;- factor(df$color, levels = c(&quot;olivedrab3&quot;, &quot;firebrick2&quot;, &quot;goldenrod2&quot;, &quot;grey40&quot;, &quot;lightseagreen&quot;, 'maroon1'))%%00010%%00010df_summary &lt;- df_summary %&gt;%%%00010%%00009arrange(match(change, c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, n, &quot;)&quot;)) %&gt;%%%00010%%00009filter(n &gt; 0)%%00010%%00010# coalesce ratio and LIMMA columns%%00010df &lt;- df |&gt;%%00010%%00009mutate(facet = ifelse(is.na(Ratio), 'LIMMA', 'Ratio')) |&gt;%%00010%%00009mutate(logFC = coalesce(logFC, Ratio))%%00010%%00010df$p[which(is.na(df$p) &amp; df$facet == 'Ratio')] &lt;- -1%%00010%%00010# create a df for labelling%%00010m &lt;- matrix(0, ncol = ncol(df), nrow = 0)%%00010df_label &lt;- as.data.frame(m)%%00010colnames(df_label) &lt;- colnames(df)%%00010top_n &lt;- knime.flow.in[[&quot;top_n&quot;]]%%00010top_n_qual &lt;- knime.flow.in[[&quot;top_n_qual&quot;]]%%00010%%00010# get all rows of points that should be labelled%%00010if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 1){ # all significant%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] %in% c(0,1)){ # ignore thresholds &amp; all changed%%00010%%00009%%00009temp &lt;- df[df$change %in% c(category_all_up, category_all_down),]%%00010%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){ # up%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_up,]%%00010%%00009} else {%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_down,]%%00010%%00009}%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00009%%00010} else if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 2){ # top n%%00010%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) {%%00010%%00009%%00009%%00009df_qual &lt;- df |&gt;%%00010%%00009%%00009%%00009%%00009filter(facet == 'Ratio') |&gt;%%00010%%00009%%00009%%00009%%00009mutate(logFC_abs = abs(logFC)) |&gt;%%00010%%00009%%00009%%00009%%00009arrange(desc(logFC_abs)) |&gt;%%00010%%00009%%00009%%00009%%00009select(-logFC_abs)%%00010%%00009}%%00010%%00009%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 0) { # ignore thresholds%%00010%%00009%%00009if(top_n &gt; nrow(df)) top_n &lt;- nrow(df)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- df[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(df_qual)) top_n_qual &lt;- nrow(df_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, df_qual[1:top_n_qual,])%%00009%%00010%%00009} else {%%00010%%00009%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 1){ # all changed%%00010%%00009%%00009%%00009temp &lt;- df[df$change %in% c(category_significant_up, category_significant_down),]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change %in% c(category_ratio_up, category_ratio_down),]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_up,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_up,]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 3){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_down,]%%00010%%00009%%00009%%00009if(knime.flow.in[[&quot;label_qual&quot;]] == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_down,]%%00010%%00009%%00009}%%00010%%00009%%00009%%00010%%00009%%00009if(top_n &gt; nrow(temp)) top_n &lt;- nrow(temp)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- temp[1:top_n,]%%00010%%00010%%00009%%00009if(top_n_qual &gt; nrow(temp_qual)) top_n_qual &lt;- nrow(temp_qual)%%00010%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, temp_qual[1:top_n_qual,])%%00010%%00009}%%00010%%00009%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010%%00009df_label &lt;- distinct(df_label)%%00010}%%00010%%00010if(trimws(knime.flow.in[[&quot;manual_points&quot;]]) != &quot;&quot;){%%00010%%00009label_proteins &lt;- trimws(unlist(strsplit(knime.flow.in[[&quot;manual_points&quot;]], knime.flow.in[[&quot;delim&quot;]])))%%00010%%00009i_proteins &lt;- which(df$ID %in% label_proteins)%%00010%%00009temp &lt;- df[i_proteins,]%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010%%00009df_label &lt;- distinct(df_label)%%00010}%%00010%%00010# initiate variables for manual breaks%%00010max_break_y &lt;- c(max(df$p, na.rm = TRUE), p_threshold)%%00010max_break_x &lt;- c(max(df$logFC, na.rm = TRUE), logFC_threshold)%%00010%%00010# manual axis limits%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009x_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_x_limits&quot;]], &quot;;&quot;))%%00010%%00009x_min &lt;- as.numeric(x_limits[1])%%00010%%00009x_max &lt;- as.numeric(x_limits[2])%%00010%%00009max_break_x &lt;- c(max_break_x, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009y_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_y_limits&quot;]], &quot;;&quot;))%%00010%%00009y_min &lt;- as.numeric(y_limits[1])%%00010%%00009y_max &lt;- as.numeric(y_limits[2])%%00010%%00009max_break_y &lt;- c(max_break_y, y_max)%%00010}%%00010%%00010# modify y axis label%%00010if (knime.flow.in[[&quot;y_axis_label&quot;]] == &quot;&quot;){%%00010%%00009if (knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009%%00009y_label &lt;- paste(&quot;-log&quot;, knime.flow.in[[&quot;p_value_column&quot;]])%%00010%%00009} else {%%00010%%00009%%00009y_label &lt;- knime.flow.in[[&quot;p_value_column&quot;]]%%00010%%00009}%%00010} else if (startsWith(knime.flow.in[[&quot;y_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009y_raw &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010%%00009y_raw &lt;- substr(y_raw, start = 12, stop = nchar(y_raw)-1)%%00010%%00009y_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, y_raw)%%00010%%00009y_label &lt;- parse(text = y_raw)%%00010} else {%%00010%%00009y_label &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010}%%00010%%00010# modify x axis label%%00010if (knime.flow.in[[&quot;x_axis_label&quot;]] == &quot;&quot;){%%00010%%00009x_label &lt;- knime.flow.in[[&quot;logFC_column&quot;]]%%00010} else if (startsWith(knime.flow.in[[&quot;x_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009x_raw &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010%%00009x_raw &lt;- substr(x_raw, start = 12, stop = nchar(x_raw)-1)%%00010%%00009x_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, x_raw)%%00010%%00009x_label &lt;- parse(text = x_raw)%%00010} else {%%00010%%00009x_label &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010}%%00010%%00010# calculate nudges%%00010if(logFC_threshold &gt; max(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_max &lt;- logFC_threshold%%00010} else {%%00010%%00009x_nudge_max &lt;- max(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010if(-logFC_threshold &lt; min(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_min &lt;- -logFC_threshold%%00010} else {%%00010%%00009x_nudge_min &lt;- min(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010x_nudge &lt;- (x_nudge_max - x_nudge_min) * 0.04%%00010%%00010if(p_threshold &gt; max(df$p, na.rm = TRUE)) {%%00010%%00009y_nudge &lt;- p_threshold * 0.04%%00010} else {%%00010%%00009y_nudge &lt;- max(df$p, na.rm = TRUE) * 0.04%%00010}%%00010%%00010if(nrow(df_label) &gt; 0) {%%00010%%00009df_label &lt;- mutate(df_label, nudge = ifelse(logFC &gt; 0, x_nudge, -x_nudge))%%00010}%%00010%%00010# get major breaks%%00010max_break_y &lt;- max(max_break_y)%%00010five_breaks &lt;- max_break_y / 5%%00010break_length &lt;- round(five_breaks/0.5)*0.5%%00010breaks &lt;- 0%%00010while(breaks[length(breaks)] &lt;= max_break_y) breaks &lt;- c(breaks, breaks[length(breaks)] + break_length)%%00010%%00010# plot the volcano plot%%00010p &lt;- df |&gt;%%00010%%00009ggplot() +%%00010%%00009geom_point(df, mapping = aes(x = logFC, y = p, color = color), size = 2) +%%00010%%00009scale_color_identity(guide = &quot;legend&quot;, labels = df_summary$full_change) +%%00010%%00009labs(title = knime.flow.in[[&quot;title&quot;]],%%00010%%00009%%00009subtitle = knime.flow.in[[&quot;full_subtitle&quot;]],%%00010%%00009%%00009y = y_label,%%00010%%00009%%00009x = x_label) +%%00010%%00009scale_y_continuous(breaks = c(-1, breaks,5),%%00010%%00009%%00009%%00009%%00009    labels = ~ifelse(.x == -1, 'qual.', .x)) +%%00010%%00009geom_hline(data = df %&gt;% filter(facet == 'LIMMA'), aes(yintercept = p_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = -logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009theme_bw(base_size = 14) +%%00010%%00009theme(plot.title = element_text(face = &quot;bold&quot;, hjust = 0.5),%%00010%%00009%%00009 legend.title = element_blank(),%%00010%%00009%%00009 #legend.justification = c(1.05, -0.1), %%00010%%00009%%00009 legend.position = &quot;bottom&quot;,%%00010%%00009%%00009 legend.box.background = element_rect(color = &quot;grey20&quot;, size = 1),%%00010%%00009%%00009 panel.grid.minor = element_blank(),%%00010%%00009%%00009 strip.background = element_blank(),%%00010%%00009%%00009 strip.text = element_blank()) +%%00010%%00009facet_grid(facet~., space = 'free_y', scales = 'free_y')%%00010%%00010if(nrow(df_label) &gt; 0){%%00010%%00009p &lt;- p +%%00010%%00009%%00009geom_text_repel(df_label, mapping = aes(x = logFC, y = p, label = ID), %%00010%%00009%%00009%%00009%%00009%%00009 inherit.aes = FALSE,%%00010%%00009%%00009%%00009%%00009%%00009 min.segment.length = 0,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_x = df_label$nudge,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_y = y_nudge,%%00010%%00009%%00009%%00009%%00009%%00009 max.time = 2,%%00010%%00009%%00009%%00009%%00009%%00009 max.overlaps = nrow(df_label),%%00010%%00009%%00009%%00009%%00009%%00009 force = 1)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009xlim(x_min, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009ylim(y_min, y_max)%%00010}%%00010%%00010# remove y axis labelling from the bottom facet%%00010p_tab &lt;- ggplot_gtable(ggplot_build(p))%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 1) p_tab$heights[9] &lt;- p_tab$heights[9]*3%%00010%%00010grid.newpage()%%00010grid.draw(p_tab)%%00010"/>
+            <entry key="script" type="xstring" value="# load required libraries%%00010library(ggplot2)%%00010library(dplyr)%%00010library(magrittr)%%00010library(ggrepel)%%00010library(gtable)%%00010library(grid)%%00010%%00010# categories for individual points in the scatter plot%%00010category_significant = 'Significant'%%00010category_significant_up = 'Up&amp;Sign.'%%00010category_significant_down = 'Down&amp;Sign.'%%00010category_notsignificant = 'Not sign.'%%00010category_ratio_up = 'Qual. up'%%00010category_ratio_down = 'Qual. down'%%00010%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_up &lt;- c(category_significant_up, category_ratio_up) else category_all_up &lt;- category_significant_up%%00010if(knime.flow.in[[&quot;label_qual&quot;]] == 1) category_all_down &lt;- c(category_significant_down, category_ratio_down) else category_all_up &lt;- category_significant_down%%00010%%00010# load table and perform -log10 transformation%%00010df &lt;- knime.in%%00010%%00010if(knime.flow.in[[&quot;zero_p_replacement&quot;]] != 0){%%00010%%00009zero_index &lt;- which(df$p == 0)%%00010%%00009df$p[zero_index] &lt;- knime.flow.in[[&quot;zero_p_replacement&quot;]]%%00010}%%00010%%00010if(knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009df &lt;- df %&gt;%%%00010%%00009%%00009mutate(p = -log10(p))%%00010}%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 0){%%00010%%00009df$Ratio &lt;- NA%%00010%%00009label_qual &lt;- 0%%00010} else {%%00010%%00009label_qual &lt;- knime.flow.in[[&quot;label_qual&quot;]]%%00009%%00010}%%00010%%00010p_threshold &lt;- -log10(knime.flow.in[[&quot;p_threshold&quot;]])%%00010logFC_threshold &lt;- knime.flow.in[[&quot;logFC_threshold&quot;]]%%00010%%00010# add column containing info about expression change%%00010df &lt;- df %&gt;%%%00010%%00009mutate(change = case_when(p &gt; p_threshold &amp; logFC &gt; logFC_threshold ~ category_significant_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; -logFC_threshold ~ category_significant_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 p &gt; p_threshold &amp; logFC &lt; logFC_threshold &amp; logFC &gt; -logFC_threshold ~ category_significant,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &gt; 1 ~ category_ratio_up,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 is.na(p) &amp; Ratio &lt; -1 ~ category_ratio_down,%%00010%%00009%%00009%%00009%%00009%%00009%%00009 TRUE ~ category_notsignificant))%%00010%%00010# get number of proteins in each category%%00010df_summary &lt;- df %&gt;%%%00010%%00009group_by(change) %&gt;%%%00010%%00009summarize(n = n()) %&gt;%%%00010%%00009as.data.frame()%%00010%%00010all_changes &lt;- c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down)%%00010observed_changes &lt;- df_summary$change%%00010not_observed_changes &lt;- setdiff(all_changes, observed_changes)%%00010%%00010if(length(not_observed_changes) &gt; 0){%%00010%%00009df_summary_append &lt;- data.frame(change = not_observed_changes,%%00010%%00009%%00009%%00009%%00009%%00009%%00009%%00009  n = rep(0, times = length(not_observed_changes)))%%00010%%00009df_summary &lt;- rbind(df_summary, df_summary_append)%%00010}%%00010%%00010# add number of observed values in each category to the dataframe%%00010df &lt;- df %&gt;%%%00010%%00009mutate(count = case_when(change == category_significant_up ~ df_summary$n[which(df_summary$change == category_significant_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant_down ~ df_summary$n[which(df_summary$change == category_significant_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_significant ~ df_summary$n[which(df_summary$change == category_significant)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_up ~ df_summary$n[which(df_summary$change == category_ratio_up)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009change == category_ratio_down ~ df_summary$n[which(df_summary$change == category_ratio_down)],%%00010%%00009%%00009%%00009%%00009%%00009%%00009TRUE ~ df_summary$n[which(df_summary$change == category_notsignificant)])) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, count, &quot;)&quot;),%%00010%%00009%%00009  color = case_when(change == category_significant_up ~ &quot;olivedrab3&quot;,%%00010%%00009%%00009                    change == category_significant_down ~ &quot;firebrick2&quot;,%%00010%%00009%%00009                    change == category_significant ~ &quot;goldenrod2&quot;,%%00010%%00009%%00009                    change == category_ratio_up ~ &quot;lightseagreen&quot;, %%00010%%00009%%00009                    change == category_ratio_down ~ &quot;maroon1&quot;,%%00010%%00009%%00009                    TRUE ~ &quot;grey40&quot;))%%00010%%00009%%00009                    %%00010if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 0){%%00010%%00009df$sorting &lt;- abs(df$logFC)%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 1){%%00010%%00009df$sorting &lt;- df$p%%00010} else if(knime.flow.in[[&quot;top_n_criteria (index)&quot;]] == 2){%%00010%%00009df$sorting &lt;- df$p*abs(df$logFC)%%00010}%%00010%%00009%%00009                    %%00010df &lt;- df %&gt;%%%00010%%00009arrange(desc(sorting))%%00009   %%00010%%00010# create values for plot legend%%00010df$change &lt;- factor(df$change, levels = c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))%%00010df$color &lt;- factor(df$color, levels = c(&quot;olivedrab3&quot;, &quot;firebrick2&quot;, &quot;goldenrod2&quot;, &quot;grey40&quot;, &quot;lightseagreen&quot;, 'maroon1'))%%00010%%00010df_summary &lt;- df_summary %&gt;%%%00010%%00009arrange(match(change, c(category_significant_up, category_significant_down, category_significant, category_notsignificant, category_ratio_up, category_ratio_down))) %&gt;%%%00010%%00009mutate(full_change = paste0(change, &quot; (&quot;, n, &quot;)&quot;)) %&gt;%%%00010%%00009filter(n &gt; 0)%%00010%%00010# coalesce ratio and LIMMA columns%%00010df &lt;- df |&gt;%%00010%%00009mutate(facet = ifelse(is.na(Ratio), 'LIMMA', 'Ratio')) |&gt;%%00010%%00009mutate(logFC = coalesce(logFC, Ratio))%%00010%%00010df$p[which(is.na(df$p) &amp; df$facet == 'Ratio')] &lt;- -1%%00010%%00010# create a df for labelling%%00010m &lt;- matrix(0, ncol = ncol(df), nrow = 0)%%00010df_label &lt;- as.data.frame(m)%%00010colnames(df_label) &lt;- colnames(df)%%00010top_n &lt;- knime.flow.in[[&quot;top_n&quot;]]%%00010top_n_qual &lt;- knime.flow.in[[&quot;top_n_qual&quot;]]%%00010%%00010# get all rows of points that should be labelled%%00010if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 1){ # all significant%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] %in% c(0,1)){ # ignore thresholds &amp; all changed%%00010%%00009%%00009temp &lt;- df[df$change %in% c(category_all_up, category_all_down),]%%00010%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){ # up%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_up,]%%00010%%00009} else {%%00010%%00009%%00009temp &lt;- df[df$change %in% category_all_down,]%%00010%%00009}%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00009%%00010} else if(knime.flow.in[[&quot;automatic_label (index)&quot;]] == 2){ # top n%%00010%%00009if(label_qual == 1) {%%00010%%00009%%00009%%00009df_qual &lt;- df |&gt;%%00010%%00009%%00009%%00009%%00009filter(facet == 'Ratio') |&gt;%%00010%%00009%%00009%%00009%%00009mutate(logFC_abs = abs(logFC)) |&gt;%%00010%%00009%%00009%%00009%%00009arrange(desc(logFC_abs)) |&gt;%%00010%%00009%%00009%%00009%%00009select(-logFC_abs)%%00010%%00009}%%00010%%00009%%00010%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 0) { # ignore thresholds%%00010%%00009%%00009if(top_n &gt; nrow(df)) top_n &lt;- nrow(df)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- df[1:top_n,]%%00010%%00010%%00009%%00009if(label_qual == 1) {%%00010%%00009%%00009%%00009if(top_n_qual &gt; nrow(df_qual)) top_n_qual &lt;- nrow(df_qual)%%00010%%00009%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, df_qual[1:top_n_qual,])%%00010%%00009%%00009}%%00010%%00009%%00009%%00009%%00010%%00009} else {%%00010%%00009%%00009if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 1){ # all changed%%00010%%00009%%00009%%00009temp &lt;- df[df$change %in% c(category_significant_up, category_significant_down),]%%00010%%00009%%00009%%00009if(label_qual == 1) temp_qual &lt;- df_qual[df_qual$change %in% c(category_ratio_up, category_ratio_down),]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 2){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_up,]%%00010%%00009%%00009%%00009if(label_qual == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_up,]%%00010%%00009%%00009} else if(knime.flow.in[[&quot;use_thresholds (index)&quot;]] == 3){%%00010%%00009%%00009%%00009temp &lt;- df[df$change == category_significant_down,]%%00010%%00009%%00009%%00009if(label_qual == 1) temp_qual &lt;- df_qual[df_qual$change == category_ratio_down,]%%00010%%00009%%00009}%%00010%%00009%%00009%%00010%%00009%%00009if(top_n &gt; nrow(temp)) top_n &lt;- nrow(temp)%%00010%%00009%%00009if(top_n &gt; 0) temp &lt;- temp[1:top_n,]%%00010%%00010%%00009%%00009if(label_qual == 1) {%%00010%%00009%%00009%%00009if(top_n_qual &gt; nrow(temp_qual)) top_n_qual &lt;- nrow(temp_qual)%%00010%%00009%%00009%%00009if(top_n_qual &gt; 0) temp &lt;- rbind(temp, temp_qual[1:top_n_qual,])%%00010%%00009%%00009}%%00010%%00009}%%00010%%00009%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010%%00009df_label &lt;- distinct(df_label)%%00010}%%00010%%00010if(trimws(knime.flow.in[[&quot;manual_points&quot;]]) != &quot;&quot;){%%00010%%00009label_proteins &lt;- trimws(unlist(strsplit(knime.flow.in[[&quot;manual_points&quot;]], knime.flow.in[[&quot;delim&quot;]])))%%00010%%00009i_proteins &lt;- which(df$ID %in% label_proteins)%%00010%%00009temp &lt;- df[i_proteins,]%%00010%%00009df_label &lt;- rbind(df_label, temp)%%00010%%00009df_label &lt;- distinct(df_label)%%00010}%%00010%%00010# initiate variables for manual breaks%%00010max_break_y &lt;- c(max(df$p, na.rm = TRUE), p_threshold)%%00010max_break_x &lt;- c(max(df$logFC, na.rm = TRUE), logFC_threshold)%%00010%%00010# manual axis limits%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009x_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_x_limits&quot;]], &quot;;&quot;))%%00010%%00009x_min &lt;- as.numeric(x_limits[1])%%00010%%00009x_max &lt;- as.numeric(x_limits[2])%%00010%%00009max_break_x &lt;- c(max_break_x, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009y_limits &lt;- unlist(strsplit(knime.flow.in[[&quot;manual_y_limits&quot;]], &quot;;&quot;))%%00010%%00009y_min &lt;- as.numeric(y_limits[1])%%00010%%00009y_max &lt;- as.numeric(y_limits[2])%%00010%%00009max_break_y &lt;- c(max_break_y, y_max)%%00010}%%00010%%00010# modify y axis label%%00010if (knime.flow.in[[&quot;y_axis_label&quot;]] == &quot;&quot;){%%00010%%00009if (knime.flow.in[[&quot;additional_p_value_log&quot;]] == 1) {%%00010%%00009%%00009y_label &lt;- paste(&quot;-log&quot;, knime.flow.in[[&quot;p_value_column&quot;]])%%00010%%00009} else {%%00010%%00009%%00009y_label &lt;- knime.flow.in[[&quot;p_value_column&quot;]]%%00010%%00009}%%00010} else if (startsWith(knime.flow.in[[&quot;y_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009y_raw &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010%%00009y_raw &lt;- substr(y_raw, start = 12, stop = nchar(y_raw)-1)%%00010%%00009y_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, y_raw)%%00010%%00009y_label &lt;- parse(text = y_raw)%%00010} else {%%00010%%00009y_label &lt;- knime.flow.in[[&quot;y_axis_label&quot;]]%%00010}%%00010%%00010# modify x axis label%%00010if (knime.flow.in[[&quot;x_axis_label&quot;]] == &quot;&quot;){%%00010%%00009x_label &lt;- knime.flow.in[[&quot;logFC_column&quot;]]%%00010} else if (startsWith(knime.flow.in[[&quot;x_axis_label&quot;]], &quot;expression(&quot;)) {%%00010%%00009x_raw &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010%%00009x_raw &lt;- substr(x_raw, start = 12, stop = nchar(x_raw)-1)%%00010%%00009x_raw &lt;- gsub(&quot;\\\&quot;&quot;, &quot;'&quot;, x_raw)%%00010%%00009x_label &lt;- parse(text = x_raw)%%00010} else {%%00010%%00009x_label &lt;- knime.flow.in[[&quot;x_axis_label&quot;]]%%00010}%%00010%%00010# calculate nudges%%00010if(logFC_threshold &gt; max(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_max &lt;- logFC_threshold%%00010} else {%%00010%%00009x_nudge_max &lt;- max(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010if(-logFC_threshold &lt; min(df$logFC, na.rm = TRUE)) {%%00010%%00009x_nudge_min &lt;- -logFC_threshold%%00010} else {%%00010%%00009x_nudge_min &lt;- min(df$logFC, na.rm = TRUE)%%00010}%%00010%%00010x_nudge &lt;- (x_nudge_max - x_nudge_min) * 0.04%%00010%%00010if(p_threshold &gt; max(df$p, na.rm = TRUE)) {%%00010%%00009y_nudge &lt;- p_threshold * 0.04%%00010} else {%%00010%%00009y_nudge &lt;- max(df$p, na.rm = TRUE) * 0.04%%00010}%%00010%%00010if(nrow(df_label) &gt; 0) {%%00010%%00009df_label &lt;- mutate(df_label, nudge = ifelse(logFC &gt; 0, x_nudge, -x_nudge))%%00010}%%00010%%00010# get major breaks%%00010max_break_y &lt;- max(max_break_y)%%00010five_breaks &lt;- max_break_y / 5%%00010break_length &lt;- round(five_breaks/0.5)*0.5%%00010breaks &lt;- 0%%00010while(breaks[length(breaks)] &lt;= max_break_y) breaks &lt;- c(breaks, breaks[length(breaks)] + break_length)%%00010%%00010# plot the volcano plot%%00010p &lt;- df |&gt;%%00010%%00009ggplot() +%%00010%%00009geom_point(df, mapping = aes(x = logFC, y = p, color = color), size = 2) +%%00010%%00009scale_color_identity(guide = &quot;legend&quot;, labels = df_summary$full_change) +%%00010%%00009labs(title = knime.flow.in[[&quot;title&quot;]],%%00010%%00009%%00009subtitle = knime.flow.in[[&quot;full_subtitle&quot;]],%%00010%%00009%%00009y = y_label,%%00010%%00009%%00009x = x_label) +%%00010%%00009scale_y_continuous(breaks = c(-1, breaks,5),%%00010%%00009%%00009%%00009%%00009    labels = ~ifelse(.x == -1, 'qual.', .x)) +%%00010%%00009geom_hline(data = df %&gt;% filter(facet == 'LIMMA'), aes(yintercept = p_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009geom_vline(aes(xintercept = -logFC_threshold), linetype = 'dashed', color = &quot;grey20&quot;) +%%00010%%00009theme_bw(base_size = 14) +%%00010%%00009theme(plot.title = element_text(face = &quot;bold&quot;, hjust = 0.5),%%00010%%00009%%00009 legend.title = element_blank(),%%00010%%00009%%00009 #legend.justification = c(1.05, -0.1), %%00010%%00009%%00009 legend.position = &quot;bottom&quot;,%%00010%%00009%%00009 legend.box.background = element_rect(color = &quot;grey20&quot;, size = 1),%%00010%%00009%%00009 panel.grid.minor = element_blank(),%%00010%%00009%%00009 strip.background = element_blank(),%%00010%%00009%%00009 strip.text = element_blank()) +%%00010%%00009facet_grid(facet~., space = 'free_y', scales = 'free_y')%%00010%%00010if(nrow(df_label) &gt; 0){%%00010%%00009p &lt;- p +%%00010%%00009%%00009geom_text_repel(df_label, mapping = aes(x = logFC, y = p, label = ID), %%00010%%00009%%00009%%00009%%00009%%00009 inherit.aes = FALSE,%%00010%%00009%%00009%%00009%%00009%%00009 min.segment.length = 0,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_x = df_label$nudge,%%00010%%00009%%00009%%00009%%00009%%00009 nudge_y = y_nudge,%%00010%%00009%%00009%%00009%%00009%%00009 max.time = 2,%%00010%%00009%%00009%%00009%%00009%%00009 max.overlaps = nrow(df_label),%%00010%%00009%%00009%%00009%%00009%%00009 force = 1)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_x_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009xlim(x_min, x_max)%%00010}%%00010%%00010if(knime.flow.in[[&quot;manual_y_limits&quot;]] != &quot;&quot;){%%00010%%00009p &lt;- p +%%00010%%00009%%00009ylim(y_min, y_max)%%00010}%%00010%%00010# remove y axis labelling from the bottom facet%%00010p_tab &lt;- ggplot_gtable(ggplot_build(p))%%00010%%00010if(knime.flow.in[[&quot;qual_bool&quot;]] == 1) p_tab$heights[9] &lt;- p_tab$heights[9]*3%%00010%%00010grid.newpage()%%00010grid.draw(p_tab)%%00010"/>
             <entry key="templateUUID" type="xstring" isnull="true" value=""/>
             <entry key="version" type="xstring" value="version 1.x"/>
             <entry key="Output non numbers (NaN, Inf, -Inf) as missing cells" type="xboolean" value="false"/>
diff --git a/Metanodes templates/Graphs/Volcano plot/settings.xml b/Metanodes templates/Graphs/Volcano plot/settings.xml
index ae653df56..d90b948a5 100644
--- a/Metanodes templates/Graphs/Volcano plot/settings.xml	
+++ b/Metanodes templates/Graphs/Volcano plot/settings.xml	
@@ -43,7 +43,7 @@
         </config>
     </config>
     <config key="metadata">
-        <entry key="description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.7 from 2023-12-05%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
+        <entry key="description" type="xstring" value="Metanode for creating volcano plot (dependency of -log(p-value) on log(fold change)) from selected columns of input table. It enables you to select limits on both axis to categorize all points based on significance/ratio value. It is also possible to plot qualitative changes, in this case an additional panel will be added to the bottom portion of the plot. Note that only points missing from the standard volcano plot will be plotted in this panel in order to avoid redundancy.%%00010%%00010Ratios/fold changes should be provided in log-transformed format (logFC) together with the logFC limit for values categorization, visualization and summary. Same applies to qualitative changes, if e.g. ratios are used to describe these changes, they should be log-transformed prior to this metanode.%%00010%%00010P values are by default transformed using negative decadic logarithm (-log10), but it can be switched off in case you provide already -log10 transformed values.%%00010In case the p values are not -log10 transformed and they contain zero values, metanode will end up with error because -log(0) is not possible. Provide some reasonably small number for imputation or use 0 to exclude these points from the graph.%%00010%%00010It is possible to label points of interest in the volcano plot. There are two types of labelling: manual and automatic. Automatic labelling is performed based on the p-values and logFC (or both), it is possible to automatically label all or a top N number of significantly changed points from one or both sides of the volcano plot. In case of manual labelling, names of points of interest need to correspond to names used in the selected annotation column. Automatic and manual labelling are not mutually excluded, they are performed atop of each other.%%00010%%00010=================%%00010%%00010Used programs and tools and their respective licenses at the time of the metanode creation. Version numbers and the licenses might differ based on your local installation. Please inspect your local installation and contact us if you can not locate your local version and or license terms.%%00010%%00010KNIME nodes (The KNIME nodes consists of the following GNU GPL 3.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010Python 3.10 (The Python consists of the following Python 3 License. Licence terms are available here: https://docs.python.org/3/license.html)%%00010R 4.2 (R consists of the following GNU GPL 2.0 License. Licence terms are available here: https://www.gnu.org/licenses/gpl.html)%%00010%%00010The metanode was created in KNIME 4.7.7 running inside the docker image (https://hub.docker.com/r/cfprot/knime/), tag 4.7.7a.%%00010%%00010=================%%00010%%00010This version of metanode is available under the GNU GPL 3.0 License, unless stated otherwise. The full version of the license terms is available at https://www.gnu.org/licenses/gpl.html.%%00010Version: 1.0.8 from 2024-01-08%%00010Contact person: Karolina Krystofova (karolina.krystofova@ceitec.muni.cz)%%00010More information can be found at https://github.com/OmicsWorkflows/KNIME_metanodes"/>
         <config key="inports">
             <config key="inport_0">
                 <entry key="name" type="xstring" value="Input data"/>
@@ -61,7 +61,7 @@
     </config>
     <config key="workflow_template_information">
         <entry key="role" type="xstring" value="Template"/>
-        <entry key="timestamp" type="xstring" value="2023-12-05 18:58:18 +0100"/>
+        <entry key="timestamp" type="xstring" value="2024-01-08 14:53:04 +0100"/>
         <entry key="sourceURI" type="xstring" isnull="true" value=""/>
         <entry key="templateType" type="xstring" value="SubNode"/>
     </config>
diff --git a/Metanodes templates/Graphs/Volcano plot/template.knime b/Metanodes templates/Graphs/Volcano plot/template.knime
index 312db02e0..641aff597 100644
--- a/Metanodes templates/Graphs/Volcano plot/template.knime	
+++ b/Metanodes templates/Graphs/Volcano plot/template.knime	
@@ -5,7 +5,7 @@
     <entry key="version" type="xstring" value="4.1.0"/>
     <config key="workflow_template_information">
         <entry key="role" type="xstring" value="Template"/>
-        <entry key="timestamp" type="xstring" value="2023-12-05 18:58:18 +0100"/>
+        <entry key="timestamp" type="xstring" value="2024-01-08 14:53:04 +0100"/>
         <entry key="sourceURI" type="xstring" isnull="true" value=""/>
         <entry key="templateType" type="xstring" value="SubNode"/>
     </config>
diff --git a/Metanodes templates/Graphs/Volcano plot/workflow.knime b/Metanodes templates/Graphs/Volcano plot/workflow.knime
index 4dc91b6fc..ecdab1588 100644
--- a/Metanodes templates/Graphs/Volcano plot/workflow.knime	
+++ b/Metanodes templates/Graphs/Volcano plot/workflow.knime	
@@ -788,7 +788,7 @@
         </config>
         <config key="connection_6">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="1539"/>
+            <entry key="destID" type="xint" value="1548"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -798,7 +798,7 @@
         </config>
         <config key="connection_7">
             <entry key="sourceID" type="xint" value="217"/>
-            <entry key="destID" type="xint" value="1548"/>
+            <entry key="destID" type="xint" value="1539"/>
             <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
@@ -937,12 +937,6 @@
             </config>
         </config>
         <config key="connection_21">
-            <entry key="sourceID" type="xint" value="1527"/>
-            <entry key="destID" type="xint" value="1536"/>
-            <entry key="sourcePort" type="xint" value="1"/>
-            <entry key="destPort" type="xint" value="1"/>
-        </config>
-        <config key="connection_22">
             <entry key="sourceID" type="xint" value="1527"/>
             <entry key="destID" type="xint" value="1566"/>
             <entry key="sourcePort" type="xint" value="1"/>
@@ -952,6 +946,12 @@
                 <entry key="extrainfo.conn.bendpoints_size" type="xint" value="0"/>
             </config>
         </config>
+        <config key="connection_22">
+            <entry key="sourceID" type="xint" value="1527"/>
+            <entry key="destID" type="xint" value="1536"/>
+            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destPort" type="xint" value="1"/>
+        </config>
         <config key="connection_23">
             <entry key="sourceID" type="xint" value="1528"/>
             <entry key="destID" type="xint" value="1527"/>
@@ -1014,8 +1014,8 @@
         </config>
         <config key="connection_29">
             <entry key="sourceID" type="xint" value="1536"/>
-            <entry key="destID" type="xint" value="1534"/>
-            <entry key="sourcePort" type="xint" value="2"/>
+            <entry key="destID" type="xint" value="1537"/>
+            <entry key="sourcePort" type="xint" value="1"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">
@@ -1024,8 +1024,8 @@
         </config>
         <config key="connection_30">
             <entry key="sourceID" type="xint" value="1536"/>
-            <entry key="destID" type="xint" value="1537"/>
-            <entry key="sourcePort" type="xint" value="1"/>
+            <entry key="destID" type="xint" value="1534"/>
+            <entry key="sourcePort" type="xint" value="2"/>
             <entry key="destPort" type="xint" value="1"/>
             <entry key="ui_classname" type="xstring" value="org.knime.core.node.workflow.ConnectionUIInformation"/>
             <config key="ui_settings">