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Volcano plot 1.0.6 - qualitative changes #90

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Volcano plot 1.0.6 - qualitative changes #90

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8032ad5
Volcano plot 1.0.6 - qualitative changes
Heriette Dec 4, 2023
475d664
Volcano plot 1.0.7 - fixed double labelling
Heriette Dec 5, 2023
aaa7fa2
Volcano plot 1.0.8 - fixed error with qualitative change labelling
Heriette Jan 8, 2024
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2 changes: 1 addition & 1 deletion Metanodes templates/Graphs/Volcano plot/.savedWithData
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
Do not delete this file!
This file serves to indicate that the workflow was written as part of the usual save routine (not exported).

Workflow was last saved by user knimeuser on Wed Feb 22 15:49:34 CET 2023
Workflow was last saved by user knimeuser on Mon Jan 08 14:53:04 CET 2024
60 changes: 60 additions & 0 deletions Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1535)/settings.xml
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<?xml version="1.0" encoding="UTF-8"?>
<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
<entry key="node_file" type="xstring" value="settings.xml"/>
<config key="flow_stack"/>
<config key="internal_node_subsettings">
<entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
</config>
<config key="model">
<config key="defaultValue">
<entry key="boolean" type="xboolean" value="false"/>
</config>
<entry key="hideInDialog" type="xboolean" value="false"/>
<entry key="parameterName" type="xstring" value="qual_bool"/>
<entry key="label" type="xstring" value="Display also qualitative changes?"/>
<entry key="description" type="xstring" value="If checked, additional subplot will be created containing qualitative changes for cases where either p-value or logFC were missing"/>
<entry key="required" type="xboolean" value="true"/>
<entry key="flowVariableName" type="xstring" value="qual_bool"/>
<entry key="pushIntVar" type="xboolean" value="true"/>
</config>
<config key="nodeAnnotation">
<entry key="text" type="xstring" value="display qualitative%%00010changes"/>
<entry key="bgcolor" type="xint" value="16777215"/>
<entry key="x-coordinate" type="xint" value="350"/>
<entry key="y-coordinate" type="xint" value="-41"/>
<entry key="width" type="xint" value="142"/>
<entry key="height" type="xint" value="32"/>
<entry key="alignment" type="xstring" value="CENTER"/>
<entry key="borderSize" type="xint" value="0"/>
<entry key="borderColor" type="xint" value="16777215"/>
<entry key="defFontSize" type="xint" value="10"/>
<entry key="annotation-version" type="xint" value="20151123"/>
<config key="styles"/>
</config>
<entry key="customDescription" type="xstring" isnull="true" value=""/>
<entry key="state" type="xstring" value="IDLE"/>
<entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.bool.BooleanDialogNodeFactory"/>
<entry key="node-name" type="xstring" value="Boolean Configuration"/>
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
<config key="factory_settings"/>
<entry key="name" type="xstring" value="Boolean Configuration"/>
<entry key="hasContent" type="xboolean" value="false"/>
<entry key="isInactive" type="xboolean" value="false"/>
<config key="ports">
<config key="port_1">
<entry key="index" type="xint" value="1"/>
<entry key="port_dir_location" type="xstring" isnull="true" value=""/>
</config>
</config>
<config key="filestores">
<entry key="file_store_location" type="xstring" isnull="true" value=""/>
<entry key="file_store_id" type="xstring" isnull="true" value=""/>
</config>
</config>
60 changes: 60 additions & 0 deletions Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#1555)/settings.xml
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@@ -0,0 +1,60 @@
<?xml version="1.0" encoding="UTF-8"?>
<config xmlns="http://www.knime.org/2008/09/XMLConfig" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.knime.org/2008/09/XMLConfig http://www.knime.org/XMLConfig_2008_09.xsd" key="settings.xml">
<entry key="node_file" type="xstring" value="settings.xml"/>
<config key="flow_stack"/>
<config key="internal_node_subsettings">
<entry key="memory_policy" type="xstring" value="CacheSmallInMemory"/>
</config>
<config key="model">
<config key="defaultValue">
<entry key="boolean" type="xboolean" value="false"/>
</config>
<entry key="hideInDialog" type="xboolean" value="false"/>
<entry key="parameterName" type="xstring" value="label_qual"/>
<entry key="label" type="xstring" value="Label also qualitative changes?"/>
<entry key="description" type="xstring" value="If checked, cases with only qualitative changes will be also labelled based on the selected criteria. This setting will be only used if qualitative changes are to be displayed"/>
<entry key="required" type="xboolean" value="true"/>
<entry key="flowVariableName" type="xstring" value="label_qual"/>
<entry key="pushIntVar" type="xboolean" value="true"/>
</config>
<config key="nodeAnnotation">
<entry key="text" type="xstring" value="label also%%00010qualitative changes?"/>
<entry key="bgcolor" type="xint" value="16777215"/>
<entry key="x-coordinate" type="xint" value="510"/>
<entry key="y-coordinate" type="xint" value="119"/>
<entry key="width" type="xint" value="142"/>
<entry key="height" type="xint" value="32"/>
<entry key="alignment" type="xstring" value="CENTER"/>
<entry key="borderSize" type="xint" value="0"/>
<entry key="borderColor" type="xint" value="16777215"/>
<entry key="defFontSize" type="xint" value="10"/>
<entry key="annotation-version" type="xint" value="20151123"/>
<config key="styles"/>
</config>
<entry key="customDescription" type="xstring" isnull="true" value=""/>
<entry key="state" type="xstring" value="IDLE"/>
<entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.bool.BooleanDialogNodeFactory"/>
<entry key="node-name" type="xstring" value="Boolean Configuration"/>
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
<config key="factory_settings"/>
<entry key="name" type="xstring" value="Boolean Configuration"/>
<entry key="hasContent" type="xboolean" value="false"/>
<entry key="isInactive" type="xboolean" value="false"/>
<config key="ports">
<config key="port_1">
<entry key="index" type="xint" value="1"/>
<entry key="port_dir_location" type="xstring" isnull="true" value=""/>
</config>
</config>
<config key="filestores">
<entry key="file_store_location" type="xstring" isnull="true" value=""/>
<entry key="file_store_id" type="xstring" isnull="true" value=""/>
</config>
</config>
10 changes: 3 additions & 7 deletions Metanodes templates/Graphs/Volcano plot/Boolean Configuration (#336)/settings.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,21 +41,17 @@
</config>
</config>
<entry key="customDescription" type="xstring" isnull="true" value=""/>
<entry key="state" type="xstring" value="CONFIGURED"/>
<config key="nodecontainer_message">
<entry key="type" type="xstring" value="WARNING"/>
<entry key="message" type="xstring" value="Component does not have input data, execute upstream nodes first"/>
</config>
<entry key="state" type="xstring" value="IDLE"/>
<entry key="factory" type="xstring" value="org.knime.js.base.node.configuration.input.bool.BooleanDialogNodeFactory"/>
<entry key="node-name" type="xstring" value="Boolean Configuration"/>
<entry key="node-bundle-name" type="xstring" value="KNIME Quick Form Nodes"/>
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.js.quickforms"/>
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-bundle-version" type="xstring" value="4.6.0.v202202280849"/>
<entry key="node-bundle-version" type="xstring" value="4.7.0.v202302071224"/>
<entry key="node-feature-name" type="xstring" value="KNIME Quick Forms"/>
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.js.quickforms.feature.group"/>
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-feature-version" type="xstring" value="4.6.0.v202209271016"/>
<entry key="node-feature-version" type="xstring" value="4.7.4.v202306091222"/>
<config key="factory_settings"/>
<entry key="name" type="xstring" value="Boolean Configuration"/>
<entry key="hasContent" type="xboolean" value="false"/>
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4 changes: 2 additions & 2 deletions Metanodes templates/Graphs/Volcano plot/Column Appender (#1527)/settings.xml
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Expand Up @@ -38,11 +38,11 @@
<entry key="node-bundle-name" type="xstring" value="KNIME Base Nodes"/>
<entry key="node-bundle-symbolic-name" type="xstring" value="org.knime.base"/>
<entry key="node-bundle-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-bundle-version" type="xstring" value="4.6.2.v202209150849"/>
<entry key="node-bundle-version" type="xstring" value="4.7.7.v202308021457"/>
<entry key="node-feature-name" type="xstring" value="KNIME Base nodes"/>
<entry key="node-feature-symbolic-name" type="xstring" value="org.knime.features.base.feature.group"/>
<entry key="node-feature-vendor" type="xstring" value="KNIME AG, Zurich, Switzerland"/>
<entry key="node-feature-version" type="xstring" value="4.6.2.v202209150849"/>
<entry key="node-feature-version" type="xstring" value="4.7.7.v202308161346"/>
<config key="factory_settings"/>
<config key="node_creation_config">
<config key="input">
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