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requirements.txt
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#
# This file is autogenerated by pip-compile with Python 3.12
# by the following command:
#
# pip-compile --all-extras --output-file=requirements.txt
#
accessible-pygments==0.0.5
# via pydata-sphinx-theme
alabaster==1.0.0
# via sphinx
attrs==24.3.0
# via
# jsonschema
# referencing
babel==2.16.0
# via
# pydata-sphinx-theme
# sphinx
beautifulsoup4==4.12.3
# via
# nbconvert
# pydata-sphinx-theme
bleach==6.2.0
# via nbconvert
bokeh==3.6.0
# via pyopenms_viz (pyproject.toml)
certifi==2024.12.14
# via requests
charset-normalizer==3.4.0
# via requests
contourpy==1.3.0
# via
# bokeh
# matplotlib
cycler==0.12.1
# via matplotlib
defusedxml==0.7.1
# via nbconvert
docutils==0.21.2
# via
# nbsphinx
# pydata-sphinx-theme
# sphinx
fastjsonschema==2.21.1
# via nbformat
fonttools==4.54.1
# via matplotlib
idna==3.10
# via requests
imagesize==1.4.1
# via sphinx
iniconfig==2.0.0
# via pytest
jinja2==3.1.4
# via
# bokeh
# nbconvert
# nbsphinx
# sphinx
jsonschema==4.23.0
# via nbformat
jsonschema-specifications==2024.10.1
# via jsonschema
jupyter-client==8.6.3
# via nbclient
jupyter-core==5.7.2
# via
# jupyter-client
# nbclient
# nbconvert
# nbformat
jupyterlab-pygments==0.3.0
# via nbconvert
kiwisolver==1.4.7
# via matplotlib
markupsafe==3.0.2
# via
# jinja2
# nbconvert
matplotlib==3.9.2
# via pyopenms_viz (pyproject.toml)
mistune==3.1.0
# via nbconvert
nbclient==0.10.2
# via nbconvert
nbconvert==7.16.4
# via nbsphinx
nbformat==5.10.4
# via
# nbclient
# nbconvert
# nbsphinx
nbsphinx==0.9.6
# via pyopenms_viz (pyproject.toml)
numpy==2.1.2
# via
# bokeh
# contourpy
# matplotlib
# pandas
packaging==24.1
# via
# bokeh
# matplotlib
# nbconvert
# plotly
# pytest
# sphinx
pandas==2.2.3
# via
# bokeh
# pyopenms_viz (pyproject.toml)
pandocfilters==1.5.1
# via nbconvert
pillow==11.0.0
# via
# bokeh
# matplotlib
# sphinx-gallery
platformdirs==4.3.6
# via jupyter-core
plotly==5.24.1
# via pyopenms_viz (pyproject.toml)
pluggy==1.5.0
# via pytest
pydata-sphinx-theme==0.16.1
# via pyopenms_viz (pyproject.toml)
pygments==2.18.0
# via
# accessible-pygments
# nbconvert
# pydata-sphinx-theme
# sphinx
pyparsing==3.2.0
# via matplotlib
pytest==8.3.3
# via
# pyopenms_viz (pyproject.toml)
# syrupy
python-dateutil==2.9.0.post0
# via
# jupyter-client
# matplotlib
# pandas
pytz==2024.2
# via pandas
pyyaml==6.0.2
# via bokeh
pyzmq==26.2.0
# via jupyter-client
referencing==0.35.1
# via
# jsonschema
# jsonschema-specifications
requests==2.32.3
# via sphinx
rpds-py==0.22.3
# via
# jsonschema
# referencing
six==1.16.0
# via python-dateutil
snowballstemmer==2.2.0
# via sphinx
soupsieve==2.6
# via beautifulsoup4
sphinx==8.1.3
# via
# nbsphinx
# pydata-sphinx-theme
# pyopenms_viz (pyproject.toml)
# sphinx-copybutton
# sphinx-gallery
sphinx-copybutton==0.5.2
# via pyopenms_viz (pyproject.toml)
sphinx-gallery==0.18.0
# via pyopenms_viz (pyproject.toml)
sphinxcontrib-applehelp==2.0.0
# via sphinx
sphinxcontrib-devhelp==2.0.0
# via sphinx
sphinxcontrib-htmlhelp==2.1.0
# via sphinx
sphinxcontrib-jsmath==1.0.1
# via sphinx
sphinxcontrib-qthelp==2.0.0
# via sphinx
sphinxcontrib-serializinghtml==2.0.0
# via sphinx
syrupy==4.7.2
# via pyopenms_viz (pyproject.toml)
tenacity==9.0.0
# via plotly
tinycss2==1.4.0
# via nbconvert
tornado==6.4.2
# via
# bokeh
# jupyter-client
traitlets==5.14.3
# via
# jupyter-client
# jupyter-core
# nbclient
# nbconvert
# nbformat
# nbsphinx
typing-extensions==4.12.2
# via pydata-sphinx-theme
tzdata==2024.2
# via pandas
urllib3==2.2.3
# via requests
webencodings==0.5.1
# via
# bleach
# tinycss2
xyzservices==2024.9.0
# via bokeh
# pyopenms-viz
git+https://github.com/OpenMS/pyopenms_viz.git