From ec51642b52696691b8e2b27d8b83e5dd23102208 Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Thu, 14 Dec 2023 11:16:47 -0500 Subject: [PATCH] Support ALFF for censored data (#1020) --- docs/outputs.rst | 3 +- docs/workflows.rst | 19 +++- xcp_d/data/boilerplate.bib | 50 ++++++++++ xcp_d/interfaces/restingstate.py | 36 ++++++- .../data/test_ds001419_cifti_outputs.txt | 64 +++++++++++++ .../data/test_ds001419_nifti_outputs.txt | 96 +++++++++++++++++++ xcp_d/tests/data/test_pnc_cifti_outputs.txt | 32 +++++++ .../data/test_pnc_cifti_t2wonly_outputs.txt | 32 +++++++ xcp_d/tests/data/test_pnc_nifti_outputs.txt | 64 +++++++++++++ xcp_d/tests/test_workflows_restingstate.py | 2 + xcp_d/utils/restingstate.py | 83 ++++++++++++---- xcp_d/workflows/bold.py | 12 ++- xcp_d/workflows/cifti.py | 8 +- xcp_d/workflows/outputs.py | 2 +- xcp_d/workflows/restingstate.py | 38 +++++++- 15 files changed, 503 insertions(+), 38 deletions(-) diff --git a/docs/outputs.rst b/docs/outputs.rst index 0518ba492..70a4df0c9 100644 --- a/docs/outputs.rst +++ b/docs/outputs.rst @@ -244,8 +244,7 @@ Resting-state metric derivatives (ReHo and ALFF) .. important:: ALFF will not be generated if bandpass filtering is disabled with the - ``--disable-bandpass-filtering`` parameter, - or if high-motion outlier censoring is enabled ``--fd-thresh`` is greater than zero. + ``--disable-bandpass-filtering`` parameter. *XCP-D* will also parcellate the ReHo and ALFF maps with each of the atlases used for the BOLD data. diff --git a/docs/workflows.rst b/docs/workflows.rst index 77d660e7e..a047024ef 100644 --- a/docs/workflows.rst +++ b/docs/workflows.rst @@ -387,10 +387,23 @@ ALFF ---- :func:`~xcp_d.workflows.restingstate.init_alff_wf` +Amplitude of low-frequency fluctuation (ALFF) is a measure that ostensibly localizes +spontaneous neural activity in resting-state BOLD data. +It is calculated by the following: + +1. The ``filtered, interpolated, denoised BOLD`` is passed along to the ALFF workflow. +2. Voxel-wise BOLD time series are normalized (mean-centered and scaled to unit standard deviation) + over time. +3. The power spectrum and associated frequencies are estimated from the BOLD data. + - If censoring+interpolation was not performed, then this uses :func:`scipy.signal.periodogram`. + - If censoring+interpolation was performed, then this uses :func:`scipy.signal.lombscargle`. +4. The square root of the power spectrum is calculated. +5. The power spectrum values corresponding to the frequency range retained by the + temporal filtering step are extracted from the full power spectrum. +6. The mean of the within-band power spectrum is calculated and multiplied by 2. + ALFF will only be calculated if the bandpass filter is enabled -(i.e., if the ``--disable-bandpass-filter`` flag is not used) -and censoring is disabled -(i.e., if ``--fd-thresh`` is set to a value less than or equal to zero). +(i.e., if the ``--disable-bandpass-filter`` flag is not used). Smoothed ALFF derivatives will also be generated if the ``--smoothing`` flag is used. diff --git a/xcp_d/data/boilerplate.bib b/xcp_d/data/boilerplate.bib index 09cd00eba..870dbae7a 100644 --- a/xcp_d/data/boilerplate.bib +++ b/xcp_d/data/boilerplate.bib @@ -724,3 +724,53 @@ @article{najdenovska2018vivo url={https://doi.org/10.1038/sdata.2018.270}, doi={10.1038/sdata.2018.270} } + +@article{taylorlomb, + title={Lomb-Scargle your way to RSFC parameter estimation in AFNI-FATCAT}, + author={Taylor, Paul A and Chen, Gang and Glen, Daniel R and Reynolds, Richard C and Cox, Robert W}, + year={2018}, + organization={International Society for Magnetic Resonance in Medicine}, + journal={International Society for Magnetic Resonance in Medicine}, + note={Description of Lomb-Scargle applied to scrubbed fMRI data in AFNI.} +} + +@article{lomb1976least, + title={Least-squares frequency analysis of unequally spaced data}, + author={Lomb, Nicholas R}, + journal={Astrophysics and space science}, + volume={39}, + pages={447--462}, + year={1976}, + publisher={Springer} +} + +@article{scargle1982studies, + title={Studies in astronomical time series analysis. II-Statistical aspects of spectral analysis of unevenly spaced data}, + author={Scargle, Jeffrey D}, + journal={Astrophysical Journal, Part 1, vol. 263, Dec. 15, 1982, p. 835-853.}, + volume={263}, + pages={835--853}, + year={1982} +} + +@article{townsend2010fast, + title={Fast calculation of the Lomb--Scargle periodogram using graphics processing units}, + author={Townsend, RHD}, + journal={The Astrophysical Journal Supplement Series}, + volume={191}, + number={2}, + pages={247}, + year={2010}, + publisher={IOP Publishing} +} + +@article{yu2007altered, + title={Altered baseline brain activity in children with ADHD revealed by resting-state functional MRI}, + author={Yu-Feng, Zang and Yong, He and Chao-Zhe, Zhu and Qing-Jiu, Cao and Man-Qiu, Sui and Meng, Liang and Li-Xia, Tian and Tian-Zi, Jiang and Yu-Feng, Wang}, + journal={Brain and Development}, + volume={29}, + number={2}, + pages={83--91}, + year={2007}, + publisher={Elsevier} +} diff --git a/xcp_d/interfaces/restingstate.py b/xcp_d/interfaces/restingstate.py index 7588ebf24..d38aa9a00 100644 --- a/xcp_d/interfaces/restingstate.py +++ b/xcp_d/interfaces/restingstate.py @@ -8,6 +8,7 @@ import os import shutil +import pandas as pd from nipype import logging from nipype.interfaces.afni.preprocess import Despike, DespikeInputSpec from nipype.interfaces.afni.utils import ReHoInputSpec, ReHoOutputSpec @@ -16,6 +17,7 @@ File, SimpleInterface, TraitedSpec, + Undefined, traits, traits_extension, ) @@ -88,12 +90,10 @@ class _ComputeALFFInputSpec(BaseInterfaceInputSpec): TR = traits.Float(mandatory=True, desc="repetition time") low_pass = traits.Float( mandatory=True, - default_value=0.10, desc="low_pass filter in Hz", ) high_pass = traits.Float( mandatory=True, - default_value=0.01, desc="high_pass filter in Hz", ) mask = File( @@ -101,6 +101,12 @@ class _ComputeALFFInputSpec(BaseInterfaceInputSpec): mandatory=False, desc=" brain mask for nifti file", ) + temporal_mask = traits.Either( + File(exists=True), + Undefined, + mandatory=False, + desc="Temporal mask.", + ) class _ComputeALFFOutputSpec(TraitedSpec): @@ -108,7 +114,21 @@ class _ComputeALFFOutputSpec(TraitedSpec): class ComputeALFF(SimpleInterface): - """Compute ALFF.""" + """Compute amplitude of low-frequency fluctuation (ALFF). + + Notes + ----- + The ALFF implementation is based on :footcite:t:`yu2007altered`, + although the ALFF values are not scaled by the mean ALFF value across the brain. + + If censoring is applied (i.e., ``fd_thresh > 0``), then the power spectrum will be estimated + using a Lomb-Scargle periodogram + :footcite:p:`lomb1976least,scargle1982studies,townsend2010fast,taylorlomb`. + + References + ---------- + .. footbibliography:: + """ input_spec = _ComputeALFFInputSpec output_spec = _ComputeALFFOutputSpec @@ -116,16 +136,24 @@ class ComputeALFF(SimpleInterface): def _run_interface(self, runtime): # Get the nifti/cifti into matrix form data_matrix = read_ndata(datafile=self.inputs.in_file, maskfile=self.inputs.mask) + + sample_mask = None + temporal_mask = self.inputs.temporal_mask + if isinstance(temporal_mask, str) and os.path.isfile(temporal_mask): + censoring_df = pd.read_table(temporal_mask) + # Invert the temporal mask to make retained volumes 1s and dropped volumes 0s. + sample_mask = ~censoring_df["framewise_displacement"].values.astype(bool) + # compute the ALFF alff_mat = compute_alff( data_matrix=data_matrix, low_pass=self.inputs.low_pass, high_pass=self.inputs.high_pass, TR=self.inputs.TR, + sample_mask=sample_mask, ) # Write out the data - if self.inputs.in_file.endswith(".dtseries.nii"): suffix = "_alff.dscalar.nii" elif self.inputs.in_file.endswith(".nii.gz"): diff --git a/xcp_d/tests/data/test_ds001419_cifti_outputs.txt b/xcp_d/tests/data/test_ds001419_cifti_outputs.txt index 00bd54421..9b9796e6e 100644 --- a/xcp_d/tests/data/test_ds001419_cifti_outputs.txt +++ b/xcp_d/tests/data/test_ds001419_cifti_outputs.txt @@ -62,6 +62,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_design.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_den-91k_coverage.json @@ -76,6 +78,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_reho xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_den-91k_coverage.json @@ -90,6 +94,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_den-91k_coverage.json @@ -104,6 +110,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_den-91k_coverage.json @@ -118,6 +126,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_den-91k_coverage.json @@ -132,6 +142,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_den-91k_coverage.json @@ -146,6 +158,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_den-91k_coverage.json @@ -160,6 +174,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_den-91k_coverage.json @@ -174,6 +190,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_den-91k_coverage.json @@ -188,6 +206,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_den-91k_coverage.json @@ -202,6 +222,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_den-91k_coverage.json @@ -216,6 +238,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Glasser_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_den-91k_coverage.json @@ -230,6 +254,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_den-91k_coverage.json @@ -244,6 +270,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_den-91k_coverage.json @@ -258,6 +286,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_alff.dscalar.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_alff.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii @@ -265,6 +295,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-denoised_bo xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-interpolated_bold.dtseries.nii xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-interpolated_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-linc_qc.csv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-smooth_alff.dscalar.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-smooth_alff.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_reho.dscalar.nii xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-dcan_qc.hdf5 @@ -274,6 +306,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_design.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_den-91k_coverage.json @@ -288,6 +322,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_reho xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_den-91k_coverage.json @@ -302,6 +338,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_den-91k_coverage.json @@ -316,6 +354,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_den-91k_coverage.json @@ -330,6 +370,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_den-91k_coverage.json @@ -344,6 +386,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_den-91k_coverage.json @@ -358,6 +402,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_den-91k_coverage.json @@ -372,6 +418,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_den-91k_coverage.json @@ -386,6 +434,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_den-91k_coverage.json @@ -400,6 +450,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_den-91k_coverage.json @@ -414,6 +466,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_reho. xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_den-91k_coverage.json @@ -428,6 +482,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Glasser_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_den-91k_coverage.json @@ -442,6 +498,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_den-91k_coverage.json @@ -456,6 +514,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_den-91k_coverage.json @@ -470,6 +530,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_alff.dscalar.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_alff.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii @@ -477,6 +539,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-denoised_bo xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-interpolated_bold.dtseries.nii xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-interpolated_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-linc_qc.csv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-smooth_alff.dscalar.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-smooth_alff.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_reho.dscalar.nii xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_reho.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S1056Parcels_den-91k_timeseries.json diff --git a/xcp_d/tests/data/test_ds001419_nifti_outputs.txt b/xcp_d/tests/data/test_ds001419_nifti_outputs.txt index e00e49f50..cf4f86e91 100644 --- a/xcp_d/tests/data/test_ds001419_nifti_outputs.txt +++ b/xcp_d/tests/data/test_ds001419_nifti_outputs.txt @@ -60,6 +60,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-preproc_design.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_measure-pearsoncorrelation_conmat.json @@ -70,6 +72,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_measure-pearsoncorrelation_conmat.json @@ -80,6 +84,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_measure-pearsoncorrelation_conmat.json @@ -90,6 +96,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S2 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_measure-pearsoncorrelation_conmat.json @@ -100,6 +108,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S3 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_measure-pearsoncorrelation_conmat.json @@ -110,6 +120,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S4 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_measure-pearsoncorrelation_conmat.json @@ -120,6 +132,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S5 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_measure-pearsoncorrelation_conmat.json @@ -130,6 +144,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S6 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_measure-pearsoncorrelation_conmat.json @@ -140,6 +156,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S7 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_measure-pearsoncorrelation_conmat.json @@ -150,6 +168,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S8 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_measure-pearsoncorrelation_conmat.json @@ -160,6 +180,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S9 xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_measure-pearsoncorrelation_conmat.json @@ -170,6 +192,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gla xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_conmat.json @@ -180,6 +204,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gor xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.json @@ -190,6 +216,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.json @@ -201,10 +229,14 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tia xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_desc-linc_qc.csv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_alff.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.nii.gz +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-smooth_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-smooth_alff.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_reho.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-filtered_motion.json @@ -213,6 +245,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-preproc_design.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_measure-pearsoncorrelation_conmat.json @@ -223,6 +257,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_measure-pearsoncorrelation_conmat.json @@ -233,6 +269,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_measure-pearsoncorrelation_conmat.json @@ -243,6 +281,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S2 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_measure-pearsoncorrelation_conmat.json @@ -253,6 +293,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S3 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_measure-pearsoncorrelation_conmat.json @@ -263,6 +305,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S4 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_measure-pearsoncorrelation_conmat.json @@ -273,6 +317,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S5 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_measure-pearsoncorrelation_conmat.json @@ -283,6 +329,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S6 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_measure-pearsoncorrelation_conmat.json @@ -293,6 +341,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S7 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_measure-pearsoncorrelation_conmat.json @@ -303,6 +353,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S8 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_measure-pearsoncorrelation_conmat.json @@ -313,6 +365,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S9 xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_measure-pearsoncorrelation_conmat.json @@ -323,6 +377,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gla xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_conmat.json @@ -333,6 +389,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gor xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.json @@ -343,6 +401,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_alff.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_coverage.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.json @@ -354,10 +414,14 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tia xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_desc-linc_qc.csv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_alff.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.nii.gz +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-smooth_alff.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-smooth_alff.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_reho.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_measure-pearsoncorrelation_conmat.json @@ -426,6 +490,8 @@ xcp_d/sub-01/func/sub-01_task-rest_desc-preproc_design.json xcp_d/sub-01/func/sub-01_task-rest_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-rest_outliers.json xcp_d/sub-01/func/sub-01_task-rest_outliers.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_measure-pearsoncorrelation_conmat.json @@ -436,6 +502,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_measure-pearsoncorrelation_conmat.json @@ -446,6 +514,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_measure-pearsoncorrelation_conmat.json @@ -456,6 +526,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_measure-pearsoncorrelation_conmat.json @@ -466,6 +538,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_measure-pearsoncorrelation_conmat.json @@ -476,6 +550,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_measure-pearsoncorrelation_conmat.json @@ -486,6 +562,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_measure-pearsoncorrelation_conmat.json @@ -496,6 +574,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_measure-pearsoncorrelation_conmat.json @@ -506,6 +586,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_measure-pearsoncorrelation_conmat.json @@ -516,6 +598,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_measure-pearsoncorrelation_conmat.json @@ -526,6 +610,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_measure-pearsoncorrelation_conmat.json @@ -536,6 +622,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_reho. xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_conmat.json @@ -546,6 +634,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_reho.j xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.json @@ -556,6 +646,8 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_reho.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_alff.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_coverage.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.json @@ -567,10 +659,14 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_desc-linc_qc.csv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_alff.nii.gz xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.nii.gz +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-smooth_alff.json +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-smooth_alff.nii.gz xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_reho.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_reho.nii.gz xcp_d/sub-01_executive_summary.html diff --git a/xcp_d/tests/data/test_pnc_cifti_outputs.txt b/xcp_d/tests/data/test_pnc_cifti_outputs.txt index a0a09d4c7..07fecf320 100644 --- a/xcp_d/tests/data/test_pnc_cifti_outputs.txt +++ b/xcp_d/tests/data/test_pnc_cifti_outputs.txt @@ -107,6 +107,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_den-91k_coverage.json @@ -121,6 +123,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_den-91k_coverage.json @@ -135,6 +139,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_den-91k_coverage.json @@ -149,6 +155,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_den-91k_coverage.json @@ -163,6 +171,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_den-91k_coverage.json @@ -177,6 +187,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_den-91k_coverage.json @@ -191,6 +203,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_den-91k_coverage.json @@ -205,6 +219,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_den-91k_coverage.json @@ -219,6 +235,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_den-91k_coverage.json @@ -233,6 +251,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_den-91k_coverage.json @@ -247,6 +267,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_den-91k_coverage.json @@ -261,6 +283,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Glasser_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_den-91k_coverage.json @@ -275,6 +299,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_den-91k_coverage.json @@ -289,6 +315,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_den-91k_coverage.json @@ -303,6 +331,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_alff.dscalar.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_alff.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii @@ -310,6 +340,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-interpolated_bold.dtseries.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-interpolated_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-linc_qc.csv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-smooth_alff.dscalar.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-smooth_alff.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_reho.dscalar.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_reho.json xcp_d/sub-1648798153_ses-PNC1_executive_summary.html diff --git a/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt b/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt index daf56e70f..ee95ffb4c 100644 --- a/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt +++ b/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt @@ -105,6 +105,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_desc-filte xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_desc-filtered_motion.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_outliers.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_outliers.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_den-91k_coverage.json @@ -119,6 +121,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_den-91k_coverage.json @@ -133,6 +137,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_den-91k_coverage.json @@ -147,6 +153,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_den-91k_coverage.json @@ -161,6 +169,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_den-91k_coverage.json @@ -175,6 +185,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_den-91k_coverage.json @@ -189,6 +201,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_den-91k_coverage.json @@ -203,6 +217,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_den-91k_coverage.json @@ -217,6 +233,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_den-91k_coverage.json @@ -231,6 +249,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_den-91k_coverage.json @@ -245,6 +265,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_den-91k_coverage.json @@ -259,6 +281,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Glasser_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_den-91k_coverage.json @@ -273,6 +297,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_den-91k_coverage.json @@ -287,6 +313,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_den-91k_coverage.json @@ -301,6 +329,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_alff.dscalar.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_alff.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii @@ -308,6 +338,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-interpolated_bold.dtseries.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-interpolated_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-linc_qc.csv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-smooth_alff.dscalar.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-smooth_alff.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_reho.dscalar.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_reho.json xcp_d/sub-1648798153_ses-PNC1_executive_summary.html diff --git a/xcp_d/tests/data/test_pnc_nifti_outputs.txt b/xcp_d/tests/data/test_pnc_nifti_outputs.txt index 6b84c1881..4864be25e 100644 --- a/xcp_d/tests/data/test_pnc_nifti_outputs.txt +++ b/xcp_d/tests/data/test_pnc_nifti_outputs.txt @@ -57,6 +57,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_desc-p xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_desc-preproc_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_outliers.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_outliers.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_measure-pearsoncorrelation_conmat.json @@ -67,6 +69,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_measure-pearsoncorrelation_conmat.json @@ -77,6 +81,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_measure-pearsoncorrelation_conmat.json @@ -87,6 +93,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_measure-pearsoncorrelation_conmat.json @@ -97,6 +105,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_measure-pearsoncorrelation_conmat.json @@ -107,6 +117,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_measure-pearsoncorrelation_conmat.json @@ -117,6 +129,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_measure-pearsoncorrelation_conmat.json @@ -127,6 +141,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_measure-pearsoncorrelation_conmat.json @@ -137,6 +153,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_measure-pearsoncorrelation_conmat.json @@ -147,6 +165,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_measure-pearsoncorrelation_conmat.json @@ -157,6 +177,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_measure-pearsoncorrelation_conmat.json @@ -167,6 +189,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Glasser_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_measure-pearsoncorrelation_conmat.json @@ -177,6 +201,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_conmat.json @@ -187,6 +213,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_conmat.json @@ -198,10 +226,14 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_desc-linc_qc.csv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_alff.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-denoised_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-denoised_bold.nii.gz +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-smooth_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-smooth_alff.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_reho.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_reho.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-filtered_motion.json @@ -210,6 +242,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-preproc_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_measure-pearsoncorrelation_conmat.json @@ -220,6 +254,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1056Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_measure-pearsoncorrelation_conmat.json @@ -230,6 +266,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S156Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_measure-pearsoncorrelation_conmat.json @@ -240,6 +278,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S256Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_measure-pearsoncorrelation_conmat.json @@ -250,6 +290,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S356Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_measure-pearsoncorrelation_conmat.json @@ -260,6 +302,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S456Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_measure-pearsoncorrelation_conmat.json @@ -270,6 +314,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S556Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_measure-pearsoncorrelation_conmat.json @@ -280,6 +326,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S656Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_measure-pearsoncorrelation_conmat.json @@ -290,6 +338,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S756Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_measure-pearsoncorrelation_conmat.json @@ -300,6 +350,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S856Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_measure-pearsoncorrelation_conmat.json @@ -310,6 +362,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S956Parcels_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_measure-pearsoncorrelation_conmat.json @@ -320,6 +374,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Glasser_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_measure-pearsoncorrelation_conmat.json @@ -330,6 +386,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_conmat.json @@ -340,6 +398,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_alff.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_coverage.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_conmat.json @@ -351,10 +411,14 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_timeseries.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_desc-linc_qc.csv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_alff.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-denoised_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-denoised_bold.nii.gz +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-smooth_alff.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-smooth_alff.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_reho.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_reho.nii.gz xcp_d/sub-1648798153_ses-PNC1_executive_summary.html diff --git a/xcp_d/tests/test_workflows_restingstate.py b/xcp_d/tests/test_workflows_restingstate.py index 46f035b42..194985e5f 100644 --- a/xcp_d/tests/test_workflows_restingstate.py +++ b/xcp_d/tests/test_workflows_restingstate.py @@ -32,6 +32,7 @@ def test_nifti_alff(ds001419_data, tmp_path_factory): TR=TR, low_pass=0.08, high_pass=0.01, + fd_thresh=0, cifti=False, smoothing=6, omp_nthreads=2, @@ -108,6 +109,7 @@ def test_cifti_alff(ds001419_data, tmp_path_factory): TR=TR, low_pass=0.08, high_pass=0.01, + fd_thresh=0.1, cifti=True, smoothing=6, omp_nthreads=2, diff --git a/xcp_d/utils/restingstate.py b/xcp_d/utils/restingstate.py index bb212e603..9abf26e82 100644 --- a/xcp_d/utils/restingstate.py +++ b/xcp_d/utils/restingstate.py @@ -91,7 +91,7 @@ def mesh_adjacency(hemi): return data_array + data_array.T # transpose data_array and add it to itself -def compute_alff(data_matrix, low_pass, high_pass, TR): +def compute_alff(data_matrix, low_pass, high_pass, TR, sample_mask=None): """Compute amplitude of low-frequency fluctuation (ALFF). Parameters @@ -104,6 +104,8 @@ def compute_alff(data_matrix, low_pass, high_pass, TR): high pass frequency in Hz TR : float repetition time in seconds + sample_mask : numpy.ndarray or None + (timepoints,) 1D array with 1s for good volumes and 0s for censored ones. Returns ------- @@ -112,27 +114,74 @@ def compute_alff(data_matrix, low_pass, high_pass, TR): Notes ----- - Implementation based on https://pubmed.ncbi.nlm.nih.gov/16919409/. + Implementation based on :footcite:t:`yu2007altered`, + although the ALFF values are not scaled by the mean ALFF value across the brain. + + If a ``sample_mask`` is provided, then the power spectrum will be estimated using a + Lomb-Scargle periodogram + :footcite:p:`lomb1976least,scargle1982studies,townsend2010fast,taylorlomb`. + + References + ---------- + .. footbibliography:: """ fs = 1 / TR # sampling frequency - alff = np.zeros(data_matrix.shape[0]) # Create a matrix of zeros in the shape of - # number of voxels - for ii in range(data_matrix.shape[0]): # Loop through the voxels - # get array of sample frequencies + power spectrum density - array_of_sample_frequencies, power_spec_density = signal.periodogram( - data_matrix[ii, :], fs, scaling="spectrum" - ) - # square root of power spectrum density - power_spec_density_sqrt = np.sqrt(power_spec_density) + n_voxels, n_volumes = data_matrix.shape + + if sample_mask is not None: + sample_mask = sample_mask.astype(bool) + assert sample_mask.size == n_volumes, f"{sample_mask.size} != {n_volumes}" + + alff = np.zeros(n_voxels) + for i_voxel in range(n_voxels): + voxel_data = data_matrix[i_voxel, :] + # Check if the voxel's data are all the same value (esp. zeros). + # Set ALFF to 0 in that case and move on to the next voxel. + if np.std(voxel_data) == 0: + alff[i_voxel] = 0 + continue + + # Normalize data matrix over time. This will ensure that the standard periodogram and + # Lomb-Scargle periodogram will have the same scale. + voxel_data -= np.mean(voxel_data) + voxel_data /= np.std(voxel_data) + + if sample_mask is not None: + voxel_data_censored = voxel_data[sample_mask] + time_arr = np.arange(0, n_volumes * TR, TR) + assert sample_mask.size == time_arr.size, f"{sample_mask.size} != {time_arr.size}" + time_arr = time_arr[sample_mask] + frequencies_hz = np.linspace(0, 0.5 * fs, (n_volumes // 2) + 1)[1:] + angular_frequencies = 2 * np.pi * frequencies_hz + power_spectrum = signal.lombscargle( + time_arr, + voxel_data_censored, + angular_frequencies, + normalize=True, + ) + else: + # get array of sample frequencies + power spectrum density + frequencies_hz, power_spectrum = signal.periodogram( + voxel_data, + fs, + scaling="spectrum", + ) + + # square root of power spectrum + power_spectrum_sqrt = np.sqrt(power_spectrum) # get the position of the arguments closest to high_pass and low_pass, respectively ff_alff = [ - np.argmin(np.abs(array_of_sample_frequencies - high_pass)), - np.argmin(np.abs(array_of_sample_frequencies - low_pass)), + np.argmin(np.abs(frequencies_hz - high_pass)), + np.argmin(np.abs(frequencies_hz - low_pass)), ] - # alff for that voxel is 2 * the mean of the sqrt of the power spec density + # alff for that voxel is 2 * the mean of the sqrt of the power spec # from the value closest to the low pass cutoff, to the value closest # to the high pass pass cutoff - alff[ii] = len(ff_alff) * np.mean(power_spec_density_sqrt[ff_alff[0] : ff_alff[1]]) - # reshape alff so it's no longer 1 dimensional, but a #ofvoxels by 1 matrix - alff = np.reshape(alff, [len(alff), 1]) + alff[i_voxel] = len(ff_alff) * np.mean(power_spectrum_sqrt[ff_alff[0] : ff_alff[1]]) + + assert alff.size == n_voxels, f"{alff.shape} != {n_voxels}" + + # Add second dimension to array + alff = alff[:, None] + return alff diff --git a/xcp_d/workflows/bold.py b/xcp_d/workflows/bold.py index d075efd38..0f9c35796 100644 --- a/xcp_d/workflows/bold.py +++ b/xcp_d/workflows/bold.py @@ -397,7 +397,7 @@ def init_postprocess_nifti_wf( connectivity_wf = init_functional_connectivity_nifti_wf( output_dir=output_dir, min_coverage=min_coverage, - alff_available=bandpass_filter and (fd_thresh <= 0), + alff_available=bandpass_filter, mem_gb=mem_gbx["timeseries"], name="connectivity_wf", ) @@ -420,13 +420,14 @@ def init_postprocess_nifti_wf( ]) # fmt:on - if bandpass_filter and (fd_thresh <= 0): + if bandpass_filter: alff_wf = init_alff_wf( name_source=bold_file, output_dir=output_dir, TR=TR, low_pass=low_pass, high_pass=high_pass, + fd_thresh=fd_thresh, smoothing=smoothing, cifti=False, mem_gb=mem_gbx["timeseries"], @@ -437,8 +438,11 @@ def init_postprocess_nifti_wf( # fmt:off workflow.connect([ (downcast_data, alff_wf, [("bold_mask", "inputnode.bold_mask")]), + (prepare_confounds_wf, alff_wf, [ + ("outputnode.temporal_mask", "inputnode.temporal_mask"), + ]), (denoise_bold_wf, alff_wf, [ - ("outputnode.censored_denoised_bold", "inputnode.denoised_bold"), + ("outputnode.interpolated_filtered_bold", "inputnode.denoised_bold"), ]), (alff_wf, connectivity_wf, [("outputnode.alff", "inputnode.alff")]), ]) @@ -558,7 +562,7 @@ def init_postprocess_nifti_wf( ]) # fmt:on - if bandpass_filter and (fd_thresh <= 0): + if bandpass_filter: # fmt:off workflow.connect([ (alff_wf, postproc_derivatives_wf, [ diff --git a/xcp_d/workflows/cifti.py b/xcp_d/workflows/cifti.py index e9232c367..66b4cb5d5 100644 --- a/xcp_d/workflows/cifti.py +++ b/xcp_d/workflows/cifti.py @@ -378,7 +378,7 @@ def init_postprocess_cifti_wf( connectivity_wf = init_functional_connectivity_cifti_wf( min_coverage=min_coverage, - alff_available=bandpass_filter and (fd_thresh <= 0), + alff_available=bandpass_filter, output_dir=output_dir, mem_gb=mem_gbx["timeseries"], omp_nthreads=omp_nthreads, @@ -410,6 +410,7 @@ def init_postprocess_cifti_wf( TR=TR, low_pass=low_pass, high_pass=high_pass, + fd_thresh=fd_thresh, smoothing=smoothing, cifti=True, mem_gb=mem_gbx["timeseries"], @@ -419,8 +420,11 @@ def init_postprocess_cifti_wf( # fmt:off workflow.connect([ + (prepare_confounds_wf, alff_wf, [ + ("outputnode.temporal_mask", "inputnode.temporal_mask"), + ]), (denoise_bold_wf, alff_wf, [ - ("outputnode.censored_denoised_bold", "inputnode.denoised_bold"), + ("outputnode.interpolated_filtered_bold", "inputnode.denoised_bold"), ]), (alff_wf, connectivity_wf, [("outputnode.alff", "inputnode.alff")]), ]) diff --git a/xcp_d/workflows/outputs.py b/xcp_d/workflows/outputs.py index 056921f67..9219bbab6 100644 --- a/xcp_d/workflows/outputs.py +++ b/xcp_d/workflows/outputs.py @@ -914,7 +914,7 @@ def init_postproc_derivatives_wf( ]) # fmt:on - if bandpass_filter and (fd_thresh <= 0): + if bandpass_filter: ds_alff = pe.Node( DerivativesDataSink( base_directory=output_dir, diff --git a/xcp_d/workflows/restingstate.py b/xcp_d/workflows/restingstate.py index b1520062b..9b81ac016 100644 --- a/xcp_d/workflows/restingstate.py +++ b/xcp_d/workflows/restingstate.py @@ -29,6 +29,7 @@ def init_alff_wf( TR, low_pass, high_pass, + fd_thresh, smoothing, cifti, mem_gb, @@ -49,6 +50,7 @@ def init_alff_wf( TR=2., low_pass=0.1, high_pass=0.01, + fd_thresh=0, smoothing=6, cifti=False, mem_gb=0.1, @@ -63,6 +65,7 @@ def init_alff_wf( %(TR)s %(low_pass)s %(high_pass)s + %(fd_thresh)s %(smoothing)s %(cifti)s %(mem_gb)s @@ -73,9 +76,11 @@ def init_alff_wf( Inputs ------ denoised_bold - residual and filtered + This is the ``filtered, interpolated, denoised BOLD``, + although interpolation is not necessary if the data were not originally censored. bold_mask bold mask if bold is nifti + temporal_mask name_source Outputs @@ -84,18 +89,40 @@ def init_alff_wf( alff output smoothed_alff smoothed alff output + + Notes + ----- + The ALFF implementation is based on :footcite:t:`yu2007altered`, + although the ALFF values are not scaled by the mean ALFF value across the brain. + + If censoring is applied (i.e., ``fd_thresh > 0``), then the power spectrum will be estimated + using a Lomb-Scargle periodogram + :footcite:p:`lomb1976least,scargle1982studies,townsend2010fast,taylorlomb`. + + References + ---------- + .. footbibliography:: """ workflow = Workflow(name=name) + periodogram_desc = "" + if fd_thresh > 0: + periodogram_desc = ( + " using the Lomb-Scargle periodogram " + "[@lomb1976least;@scargle1982studies;@townsend2010fast;@taylorlomb]" + ) + workflow.__desc__ = f""" \ The amplitude of low-frequency fluctuation (ALFF) [@alff] was computed by transforming -the processed BOLD timeseries to the frequency domain. The power spectrum was computed within -the {high_pass}-{low_pass} Hz frequency band and the mean square root of the power spectrum was -calculated at each voxel to yield voxel-wise ALFF measures. +the mean-centered, standard deviation-normalized, denoised BOLD timeseries to the frequency +domain{periodogram_desc}. +The power spectrum was computed within the {high_pass}-{low_pass} Hz frequency band and the +mean square root of the power spectrum was calculated at each voxel to yield voxel-wise ALFF +measures. """ inputnode = pe.Node( - niu.IdentityInterface(fields=["denoised_bold", "bold_mask"]), + niu.IdentityInterface(fields=["denoised_bold", "bold_mask", "temporal_mask"]), name="inputnode", ) outputnode = pe.Node( @@ -127,6 +154,7 @@ def init_alff_wf( (inputnode, alff_compt, [ ("denoised_bold", "in_file"), ("bold_mask", "mask"), + ("temporal_mask", "temporal_mask"), ]), (alff_compt, alff_plot, [("alff", "filename")]), (alff_compt, outputnode, [("alff", "alff")])