v0.3.1

## New features
- Added `check_cmat` and `coef_simu` to the list of exported functions as they can be useful for specific use cases.
- Added full documentation.

## Bug fixes
- In `check_cmat`, removed the call to `limSolve::nnls()` to be replaced by `coneproj::coneB` (also a NNLS solver) to reduce the number of dependencies.
- In `coneproj.fit`, list of active constraints is now returned by the face of the constraint cone.

Author: PierreMasselot

.Rbuildignore

@@ -1,3 +1,6 @@
 ^cirls\.Rproj$
 ^\.Rproj\.user$
 ^LICENSE\.md$
+^\.github$
+^cran-comments\.md$
+^CRAN-SUBMISSION$

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,52 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

CRAN-SUBMISSION

@@ -0,0 +1,3 @@
+Version: 0.3.1
+Date: 2024-09-09 13:16:05 UTC
+SHA: dab1b38b00d2bb6da1f1854fbef2e139d7003c11

DESCRIPTION

@@ -1,10 +1,10 @@
 Package: cirls
-Title: Constrained iteratively reweighted least squares
-Version: 0.2.1
+Title: Constrained Iteratively Reweighted Least Squares
+Version: 0.3.1
 Authors@R: c( 
     person(given = "Pierre",
            family = "Masselot",
-           role = c("aut", "cre"),
+           role = c("aut", "cre", "cph"),
            email = "pierre.masselot@lshtm.ac.uk",
            comment = c(ORCID = "0000-0002-7326-1290")),
 	person(given = "Antonio",
@@ -13,18 +13,19 @@ Authors@R: c(
            email = "antonio.gasparrini@lshtm.ac.uk",
            comment = c(ORCID = "0000-0002-2271-3568"))
 	)
-Description: Provides a method to fit generalized additive models with coefficients submitted to linear constraints. The provided method can be used within the base `glm` function to take advantage of its full machinery.
+Description: Routines to fit generalized linear models with constrained coefficients, along with inference on the coefficients. Designed to be used in conjunction with the base glm() function.
 License: GPL (>= 3)
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE, old_usage = TRUE)
 RoxygenNote: 7.3.1
 Imports: 
-    quadprog,
+  quadprog,
 	osqp,
 	coneproj,
 	TruncatedNormal,
-    stats
+  stats
 Suggests: 
     testthat (>= 3.0.0)
 Config/testthat/edition: 3
+URL: https://github.com/PierreMasselot/cirls