Update MONAI_DATA_DIRECTORY path in nnUNet bundle notebook to relativ…

…e path
Project-MONAI · Feb 26, 2025 · 3f71b08 · 3f71b08
1 parent 482bb70
commit 3f71b08
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/bundle/06_nnunet_monai_bundle.ipynb b/bundle/06_nnunet_monai_bundle.ipynb
@@ -96,7 +96,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "os.environ[\"MONAI_DATA_DIRECTORY\"] = \"/home/maia-user/Documents/MONAI/Data\""
+    "os.environ[\"MONAI_DATA_DIRECTORY\"] = \"MONAI/Data\""
    ]
   },
   {
@@ -488,7 +488,7 @@
     "\n",
     "\n",
     "BUNDLE_ROOT=nnUNetBundle\n",
-    "MONAI_DATA_DIRECTORY=/home/maia-user/Documents/MONAI/Data\n",
+    "MONAI_DATA_DIRECTORY=MONAI/Data\n",
     "\n",
     "python -m monai.bundle run \\\n",
     "    --config-file $BUNDLE_ROOT/configs/inference.yaml \\\n",
@@ -825,7 +825,7 @@
    "outputs": [],
    "source": [
     "%%bash\n",
-    "export MONAI_DATA_DIRECTORY=/home/maia-user/Documents/MONAI/Data\n",
+    "export MONAI_DATA_DIRECTORY=MONAI/Data\n",
     "export nnUNet_raw=$MONAI_DATA_DIRECTORY\"/nnUNet/nnUNet_raw_data_base\"\n",
     "export nnUNet_preprocessed=$MONAI_DATA_DIRECTORY\"/nnUNet/nnUNet_preprocessed\"\n",
     "export nnUNet_results=$MONAI_DATA_DIRECTORY\"/nnUNet/nnUNet_trained_models\"\n",