From 3f71b085029c532ac7fff37379e151d5f662e9d4 Mon Sep 17 00:00:00 2001 From: simben Date: Wed, 26 Feb 2025 10:19:44 +0000 Subject: [PATCH] Update MONAI_DATA_DIRECTORY path in nnUNet bundle notebook to relative path --- bundle/06_nnunet_monai_bundle.ipynb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/bundle/06_nnunet_monai_bundle.ipynb b/bundle/06_nnunet_monai_bundle.ipynb index b9572849e..ee6f22b0a 100644 --- a/bundle/06_nnunet_monai_bundle.ipynb +++ b/bundle/06_nnunet_monai_bundle.ipynb @@ -96,7 +96,7 @@ "metadata": {}, "outputs": [], "source": [ - "os.environ[\"MONAI_DATA_DIRECTORY\"] = \"/home/maia-user/Documents/MONAI/Data\"" + "os.environ[\"MONAI_DATA_DIRECTORY\"] = \"MONAI/Data\"" ] }, { @@ -488,7 +488,7 @@ "\n", "\n", "BUNDLE_ROOT=nnUNetBundle\n", - "MONAI_DATA_DIRECTORY=/home/maia-user/Documents/MONAI/Data\n", + "MONAI_DATA_DIRECTORY=MONAI/Data\n", "\n", "python -m monai.bundle run \\\n", " --config-file $BUNDLE_ROOT/configs/inference.yaml \\\n", @@ -825,7 +825,7 @@ "outputs": [], "source": [ "%%bash\n", - "export MONAI_DATA_DIRECTORY=/home/maia-user/Documents/MONAI/Data\n", + "export MONAI_DATA_DIRECTORY=MONAI/Data\n", "export nnUNet_raw=$MONAI_DATA_DIRECTORY\"/nnUNet/nnUNet_raw_data_base\"\n", "export nnUNet_preprocessed=$MONAI_DATA_DIRECTORY\"/nnUNet/nnUNet_preprocessed\"\n", "export nnUNet_results=$MONAI_DATA_DIRECTORY\"/nnUNet/nnUNet_trained_models\"\n",