From 9626d84fc78fbc83d57ee5afc332ddbb6bad90d2 Mon Sep 17 00:00:00 2001 From: Becheler Date: Mon, 29 Jan 2024 14:45:05 +0000 Subject: [PATCH] deploy: ea2839dc859fa7fab0adcfe8d6bb0e0db89d8fb8 --- newick_generator.html | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/newick_generator.html b/newick_generator.html index 6b84057a..6a20a0ac 100644 --- a/newick_generator.html +++ b/newick_generator.html @@ -217,9 +217,9 @@

quetzal::format::newick::TreeAlign
Set a root node branch length to zero. Remove all nested comments.
Definition: from_network.hpp:180

Since there are no comments stored in the labels of the generated random tree, the output of the different flavors are here quite similar:

Output

-
1 (,(,((,),))):0.0;
-
2 (,(,((,),)));
-
3 (,(,((,),)));
+
1 ((,),((,),)):0.0;
+
2 ((,),((,),));
+
3 ((,),((,),));

Custom properties

@@ -280,7 +280,7 @@

edge_info
Definition: newick_parser_2.cpp:12
vertex_info
Definition: coalescence_binary_tree_2.cpp:5

Output

-
1 ((R:1,T:3)G:9,((W:2,L:2)B:2,V:2)I:6)K:0.0;
+
1 ((T:2,V:2)U:8,(C:3,(W:8,J:7)U:1)J:7)T:0.0;

From a Quetzal k-ary tree

@@ -320,9 +320,9 @@

quetzal::coalescence::get_random_k_ary_tree
std::pair< quetzal::coalescence::k_ary_tree< Vertex, Edge >, typename quetzal::coalescence::k_ary_tree< Vertex, Edge >::vertex_descriptor > get_random_k_ary_tree(int n_leaves, Generator &rng)
Generate a random k-ary tree.
Definition: k_ary_tree.hpp:761

Since there are no comments stored in the labels of the generated random tree, the output of the different flavors are here quite similar:

Output

-
1 (,(,(,(,)))):0.0;
-
2 (,(,(,(,))));
-
3 (,(,(,(,))));
+
1 (,((,),(,))):0.0;
+
2 (,((,),(,)));
+
3 (,((,),(,)));

Custom properties

@@ -385,7 +385,7 @@

2 2
3 2
4 2
-
5 (L:5,(K:2,(R:7,(O:2,J:1)V:6)G:0)O:3)F;
+
5 (M:7,((H:4,S:0)Z:9,(W:1,L:6)M:7)O:8)A;

Interfacing legacy code