Merge pull request nationalparkservice#63 from RobLBaker/master

Cleanup

Author: RobLBaker

DESCRIPTION

@@ -22,13 +22,11 @@ Remotes:
     nationalparkservice/DPchecker,
     nationalparkservice/QCkit
 Imports: 
-    EML,
     dplyr,
     httr,
     XML,
     curl,
     tools,
-    rlang,
     readr,
     magrittr,
     crayon,
@@ -37,7 +35,6 @@ Imports:
     QCkit (>= 0.1.4),
     here,
     jsonlite,
-    cli,
     purrr,
     tibble,
     lifecycle

NAMESPACE

@@ -20,11 +20,10 @@ export(load_core_metadata)
 export(load_data_package)
 export(load_data_package_deprecated)
 export(load_data_packages)
-export(load_domains)
 export(load_pkg_metadata)
 export(map_wkt)
 export(rm_local_packages)
 export(summarize_packages)
-export(validate_data_package)
 importFrom(lifecycle,deprecated)
 importFrom(magrittr,"%>%")
+importFrom(stats,na.omit)

NEWS.md

@@ -1,5 +1,8 @@
 # NPSutils 0.3.3 (under development)
 
+##2024-12-19
+  * remove `validate_data_package()` as this function was listed as "still under construction" is mostly obsolete given other functions and functions in the DPchecker package.
+  * remove `load_domains()` as this function was not working properly and was conceived of before the data package specifications were properly set.
 ## 2024-12-19
   * updated `load_pkg_metadata` to be simpler and essentially call `DPchecker::load_metadata` but with a preset default directory structure that works well with the default settings for `get_data_package`.
   * Add meta-analysis functions for finding and producing summary statistics multiple data packages including `get_ref_list`, `get_refs_info()`, and `summarize_packages`.

R/load_domains.R

@@ -11,6 +11,7 @@
 #'
 #' @return The function returns a dynamic, zoomable leaflet map with the specific geometry plotted.
 #' @importFrom magrittr %>%
+#' @importFrom stats na.omit
 #' @export
 #'
 #' @examples

R/map_wkt.R

@@ -138,7 +138,7 @@ get_refs_info <- function (reference_type = "dataPackage",
 #' 
 #' If a data package fails to download (or load) into R, the function will return NAs instead of summary data about the data package as well as a message about the package status ("Loads", "Error") in the dataframe that the function returns. The function will ignore files that fall outside the data package specifications (one or more .csv files and a single .xml file ending in *_metadata.xml). 
 #' 
-#' When `check_metadata` is set to the default `FALSE`, the function will attempt to and load any .csv, regardless of the contents. Data packages with restricted access can produce false positives if you do not have the appropriate permissions to download the data as the function will still download the files, but they will be populated with unhelpful hmtl rather than the intended data. Functions that fail to load into R likely violate the data package specifications in some fundamental way (e.g. .CSV file instead of .csv or no .csv files at all).
+#' When `check_metadata` is set to the default `FALSE`, the function will attempt to and load any .csv, regardless of the contents. Data packages with restricted access can produce false positives if you do not have the appropriate permissions to download the data as the function will still download the files, but they will be populated with unhelpful hmtl rather than the intended data. In this case, each .csv will be listed as having 5 columns and one row of data. Functions that completely fail to load into R likely violate the data package specifications in some fundamental way (e.g. .CSV file instead of .csv or no .csv files at all).
 #' 
 #' When `check_metadata` is set to `TRUE`, additional checks and tests are run on the data package and load errors may occur for all of the above reasons and also if there are multiple .xml files, if the metadata file name does not end in "*_metadata.xml", if there is no metadata file, or if the metadata file is EML schema-invalid.
 #'  

R/meta_analyses.R

@@ -63,5 +63,6 @@ globalVariables(c("capture.output",
                   "metaformat",
                   "data_format",
                   "metadata_format",
-                  "fileList"
+                  "fileList",
+                  "attributeName"
                   ))

R/utils.R

@@ -3,4 +3,4 @@ pkgdown: 2.1.0
 pkgdown_sha: ~
 articles:
   NPSutils: NPSutils.html
-last_built: 2024-12-20T18:46Z
+last_built: 2024-12-23T17:12Z