lose commit fix bug

fix bug from a while ago ab out creating empty table if loading not correct
Roestlab · Sep 28, 2024 · b2d70db · b2d70db
1 parent 4b79e99
commit b2d70db
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/massdash/loaders/access/OSWDataAccess.py b/massdash/loaders/access/OSWDataAccess.py
@@ -135,6 +135,8 @@ def _initializeFeatureScoreHashtable(self):
                 tmp_tbl_global = pd.read_sql("SELECT PEPTIDE_ID, QVALUE FROM SCORE_PEPTIDE WHERE CONTEXT == 'global'", self.conn)
                 # Rename columns to "SCORE_global", "PVALUE_global", "QVALUE_global", "PEP_global"
                 tmp_tbl_global.rename(columns={'QVALUE': 'PEPTIDE_QVALUE_global'}, inplace=True)
+            else:
+                tmp_tbl_global = pd.DataFrame(columns=['PEPTIDE_ID', 'PEPTIDE_QVALUE_global'])
 
             pivoted_tbl = tmp_tbl.pivot_table(
                                                 index=['RUN_ID', 'PEPTIDE_ID'],
@@ -159,6 +161,8 @@ def _initializeFeatureScoreHashtable(self):
                 tmp_tbl_global = pd.read_sql("SELECT PROTEIN_ID, QVALUE FROM SCORE_PROTEIN WHERE CONTEXT == 'global'", self.conn)
                 # Rename columns to "SCORE_global", "PVALUE_global", "QVALUE_global", "PEP_global"
                 tmp_tbl_global.rename(columns={'SCORE': 'PROTEIN_SCORE_global', 'PVALUE': 'PROTEIN_PVALUE_global', 'QVALUE': 'PROTEIN_QVALUE_global', 'PEP': 'PROTEIN_PEP_global'}, inplace=True)
+            else:
+                tmp_tbl_global = pd.DataFrame(columns=['PROTEIN_ID', 'PROTEIN_QVALUE_global'])
 
             pivoted_tbl = tmp_tbl.pivot_table(
                                                 index=['RUN_ID', 'PROTEIN_ID'],