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update ci.yml
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update everything to v5
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jcharkow committed Oct 1, 2024
1 parent fe2425a commit f34f60a
Showing 1 changed file with 7 additions and 4 deletions.
11 changes: 7 additions & 4 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -13,22 +13,25 @@ jobs:
#python-version: ["3.9", "3.10", "3.11"]
python-version: ["3.11"]
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v5

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}

- name: Install dependencies for macOS
if: runner.os == 'macOS'
run: |
brew install hdf5
pip install -r requirements-dev.txt
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install pyopenms
#pip install --index-url https://pypi.cs.uni-tuebingen.de/simple/ pyopenms
pip install --index-url https://pypi.cs.uni-tuebingen.de/simple/ pyopenms
pip install -r requirements.txt -r requirements-dev.txt -r requirements-optional.txt
- name: Test
run: |
python -m pytest --snapshot-warn-unused test/ # do not fail if unused snapshot, just warn

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