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deps: bump sphinx-rtd-theme from 2.0.0 to 3.0.1 #147

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merged 2 commits into from
Nov 7, 2024
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deps: bump sphinx-rtd-theme from 2.0.0 to 3.0.1 #147

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63c0d9d
deps: bump sphinx-rtd-theme from 2.0.0 to 3.0.1
dependabot[bot] Oct 14, 2024
6c6258c
resolve sphinx dependency error
jcharkow Nov 7, 2024
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2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ dependencies = [
[project.optional-dependencies]

conformer= [ 'onnxruntime' ]
docs = [ 'nbsphinx', 'sphinx-copybutton', 'sphinx-rtd-theme', 'sphinx==5.3.0', 'ipykernel' ]
docs = [ 'nbsphinx', 'sphinx-copybutton', 'sphinx-rtd-theme', 'sphinx', 'ipykernel' ]
gui = [ 'streamlit>=1.30.0', 'streamlit-javascript', 'tk', 'pyautogui' ]
testing = ["pytest", "syrupy", "tables" ]

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55 changes: 31 additions & 24 deletions requirements.txt
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
#
# This file is autogenerated by pip-compile with Python 3.11
# This file is autogenerated by pip-compile with Python 3.10
# by the following command:
#
# pip-compile --all-extras --output-file=requirements.txt
#
alabaster==0.7.16
alabaster==1.0.0
# via sphinx
altair==5.4.1
# via streamlit
Expand All @@ -18,7 +18,7 @@ babel==2.16.0
# via sphinx
beautifulsoup4==4.12.3
# via nbconvert
bleach==6.1.0
bleach==6.2.0
# via nbconvert
blinker==1.8.2
# via streamlit
Expand All @@ -30,7 +30,7 @@ cachetools==5.5.0
# via streamlit
certifi==2024.8.30
# via requests
charset-normalizer==3.3.2
charset-normalizer==3.4.0
# via requests
click==8.1.7
# via
Expand All @@ -44,17 +44,21 @@ contourpy==1.3.0
# via matplotlib
cycler==0.12.1
# via matplotlib
debugpy==1.8.6
debugpy==1.8.7
# via ipykernel
decorator==5.1.1
# via ipython
defusedxml==0.7.1
# via nbconvert
docutils==0.19
docutils==0.21.2
# via
# nbsphinx
# sphinx
# sphinx-rtd-theme
exceptiongroup==1.2.2
# via
# ipython
# pytest
executing==2.1.0
# via stack-data
fastjsonschema==2.20.0
Expand All @@ -77,7 +81,7 @@ iniconfig==2.0.0
# via pytest
ipykernel==6.29.5
# via massdash (pyproject.toml)
ipython==8.28.0
ipython==8.29.0
# via ipykernel
jedi==0.19.1
# via ipython
Expand Down Expand Up @@ -114,7 +118,7 @@ kiwisolver==1.4.7
# via matplotlib
markdown-it-py==3.0.0
# via rich
markupsafe==3.0.0
markupsafe==3.0.2
# via
# jinja2
# nbconvert
Expand All @@ -137,7 +141,7 @@ mpmath==1.3.0
# via sympy
msgpack==1.1.0
# via blosc2
narwhals==1.9.1
narwhals==1.13.2
# via altair
nbclient==0.10.0
# via nbconvert
Expand Down Expand Up @@ -168,13 +172,12 @@ numpy==1.26.4
# numexpr
# onnxruntime
# pandas
# pyarrow
# pydeck
# pyopenms
# scipy
# streamlit
# tables
onnxruntime==1.19.2
onnxruntime==1.20.0
# via massdash (pyproject.toml)
packaging==24.1
# via
Expand All @@ -201,7 +204,7 @@ parso==0.8.4
# via jedi
pexpect==4.9.0
# via ipython
pillow==10.4.0
pillow==11.0.0
# via
# bokeh
# matplotlib
Expand All @@ -215,11 +218,11 @@ pluggy==1.5.0
# via pytest
prompt-toolkit==3.0.48
# via ipython
protobuf==5.28.2
protobuf==5.28.3
# via
# onnxruntime
# streamlit
psutil==6.0.0
psutil==6.1.0
# via
# ipykernel
# massdash (pyproject.toml)
Expand All @@ -231,7 +234,7 @@ py-cpuinfo==9.0.0
# via
# blosc2
# tables
pyarrow==17.0.0
pyarrow==18.0.0
# via streamlit
pyautogui==0.9.54
# via massdash (pyproject.toml)
Expand All @@ -249,7 +252,7 @@ pymsgbox==1.0.9
# via pyautogui
pyopenms==3.2.0
# via massdash (pyproject.toml)
pyparsing==3.1.4
pyparsing==3.2.0
# via matplotlib
pyperclip==1.9.0
# via mouseinfo
Expand Down Expand Up @@ -289,9 +292,9 @@ requests==2.32.3
# massdash (pyproject.toml)
# sphinx
# streamlit
rich==13.9.2
rich==13.9.4
# via streamlit
rpds-py==0.20.0
rpds-py==0.21.0
# via
# jsonschema
# referencing
Expand All @@ -300,15 +303,14 @@ scipy==1.14.1
six==1.16.0
# via
# asttokens
# bleach
# python-dateutil
smmap==5.0.1
# via gitdb
snowballstemmer==2.2.0
# via sphinx
soupsieve==2.6
# via beautifulsoup4
sphinx==5.3.0
sphinx==8.1.3
# via
# massdash (pyproject.toml)
# nbsphinx
Expand All @@ -317,7 +319,7 @@ sphinx==5.3.0
# sphinxcontrib-jquery
sphinx-copybutton==0.5.2
# via massdash (pyproject.toml)
sphinx-rtd-theme==2.0.0
sphinx-rtd-theme==3.0.1
# via massdash (pyproject.toml)
sphinxcontrib-applehelp==2.0.0
# via sphinx
Expand All @@ -335,7 +337,7 @@ sphinxcontrib-serializinghtml==2.0.0
# via sphinx
stack-data==0.6.3
# via ipython
streamlit==1.39.0
streamlit==1.40.0
# via
# massdash (pyproject.toml)
# streamlit-javascript
Expand All @@ -351,19 +353,23 @@ tenacity==9.0.0
# via
# plotly
# streamlit
tinycss2==1.3.0
tinycss2==1.4.0
# via nbconvert
tk==0.1.0
# via massdash (pyproject.toml)
toml==0.10.2
# via streamlit
tomli==2.0.2
# via
# pytest
# sphinx
tornado==6.4.1
# via
# bokeh
# ipykernel
# jupyter-client
# streamlit
tqdm==4.66.5
tqdm==4.67.0
# via massdash (pyproject.toml)
traitlets==5.14.3
# via
Expand All @@ -382,6 +388,7 @@ typing-extensions==4.12.2
# altair
# bokeh
# ipython
# rich
# streamlit
# tables
tzdata==2024.2
Expand Down