ToxHub Cooking

Sharing ToxHub python code

What is this?

In this repository eTransafe members can share python scripts to do fun things in ToxHub

for example:

• Compare psur and faers data
• Display most frequent findings for compound by case count from ct.gov
• Use the ToxHub lib with a locally running primitive adaptor
• Show the 'classic' omeprazole heatmaps

Requirements:

The latest version of the python ToxHub lib

pip install -i https://test.pypi.org/simple/ toxhub --upgrade

How to use

Copy the credentials_example.py file, and rename one of them to credentials.py. Store your ToxHub credentials there.

You should now be able to run any of the files in the recipes folder

Put scrips you don't want to share in the secretrecipes folder, they will not be committed to git. Things you would like to share can go in the recipes folder, 'handy' reusable pieces of code can be placed in the supermarket

Pictures, charts and files that are generated are saved in the output folder

Contributions

Contributions and constructive feedback is welcome, open a pull request or send a message.