diff --git a/CHANGELOG.md b/CHANGELOG.md index 80bc72297..39b9e45f6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,7 +11,8 @@ and this project follows to [Calendar Versioning](https://calver.org/). #### Ancient Metagenome: Host Associated -- Austin 2024 10.1038/s41598-024-64818-7 (added by @alexhbnr) +- Austin 2024 10.1038/s41598-024-64818-7 (added by @alexhbnr and @jfy133) +- Bozzi 2024 10.1038/s41598-023-40246-x (added by @DavideBozzi and @alexhbn) #### Ancient Single Genome: Host Associated diff --git a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv index e68b0c279..a113bb9c6 100644 --- a/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv +++ b/ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv @@ -2599,3 +2599,73 @@ Austin2024 2024 10.1038/s41598-024-64818-7 ARP 21 S SRA PRJNA1056444 SRS19976919 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 31 S SRA PRJNA1056444 SRS19976918 ARP31S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 PAIRED WGS 96719984 SRR27336798 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/098/SRR27336798/SRR27336798_2.fastq.gz b88b1d8e4afd3b15ed74b491e1036e4b;6ae95f827831eeb1ce02e91a0e31babc 3651086684;3545748908 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 13 T SRA PRJNA1056444 SRS19976914 ARP13T_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 7421314 SRR27336802 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/002/SRR27336802/SRR27336802.fastq.gz 5810e74da314eabe751ecec2030edd0c 202442256 Austin2024 2024 10.1038/s41598-024-64818-7 ARP 34 S SRA PRJNA1056444 SRS19976911 ARP34S_shotgun double KAPA HiFi Uracil+ half-udg NA NextSeq 500 SINGLE WGS 9941233 SRR27336805 ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/005/SRR27336805/SRR27336805.fastq.gz 6b803041313b9c4ecc29a83ee05dd7f3 255778837 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN0003 ENA PRJEB67998 ERS16595011 MN0003 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 127033674 ERR12206690 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/090/ERR12206690/ERR12206690.fastq.gz b85993652682384691f1a230e36c7e04 5242518069 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN0008 ENA PRJEB67998 ERS16595020 MN0008 double Phusion Hot Start High-Fidelity DNA half-udg NA Illumina HiSeq 2500 SINGLE WGS 569521377 ERR12206699 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/099/ERR12206699/ERR12206699.fastq.gz 5e16418d71a85137714dfc8212c30193 21881693637 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN0009 ENA PRJEB67998 ERS16595017 MN0009 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 381236503 ERR12206696 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/096/ERR12206696/ERR12206696.fastq.gz 29c9ed2afe93be03c90398a1e7e287fd 14714457403 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00010 ENA PRJEB67998 ERS16594997 MN00010 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 55475228 ERR12206676 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/076/ERR12206676/ERR12206676.fastq.gz 3d66ff055110d2430ddba575572b2b56 2138238746 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00013 ENA PRJEB67998 ERS16595018 MN00013 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 586099025 ERR12206697 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/097/ERR12206697/ERR12206697.fastq.gz df56276d1a5e4baf89d61ca73299e83f 24700734284 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00016 ENA PRJEB67998 ERS16595006 MN00016 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 51356321 ERR12206685 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/085/ERR12206685/ERR12206685.fastq.gz 1389a73b452064e168b17138bb75d30d 2279369624 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00021 ENA PRJEB67998 ERS16595013 MN00021 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 349386012 ERR12206692 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/092/ERR12206692/ERR12206692.fastq.gz d06a85c33c96f3505969a8f786e61afb 15598000000 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00022 ENA PRJEB67998 ERS16595004 MN00022 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 36160802 ERR12206683 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/083/ERR12206683/ERR12206683.fastq.gz e95c733e8f877540383d92bf62b60933 1976554190 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00023 ENA PRJEB67998 ERS16595003 MN00023 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 354185366 ERR12206682 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/082/ERR12206682/ERR12206682.fastq.gz 0f4ba70128fe5d2ee6fcd729ed348504 13679208317 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00039 ENA PRJEB67998 ERS16595002 MN00039 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 77223283 ERR12206681 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/081/ERR12206681/ERR12206681.fastq.gz 4ebdd66804d888bbe734a868a0581bac 3433882741 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00045 ENA PRJEB67998 ERS16595007 MN00045 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 86895628 ERR12206686 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/086/ERR12206686/ERR12206686.fastq.gz 1bc2faeae6ee7569b7831c3f6e0ae884 4664264133 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00056 ENA PRJEB67998 ERS16595019 MN00056 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 376352081 ERR12206698 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/098/ERR12206698/ERR12206698.fastq.gz 33c54926028dfbae1c92ccab07bf4e84 15905541599 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00064 ENA PRJEB67998 ERS16595009 MN00064 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 99467321 ERR12206688 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/088/ERR12206688/ERR12206688.fastq.gz 1182c36389309495f6cb9a6ab2103f12 5008316959 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00067 ENA PRJEB67998 ERS16595014 MN00067 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 372359007 ERR12206693 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/093/ERR12206693/ERR12206693.fastq.gz ffa640a3436f00c9531e76c5f63aba85 15364141727 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00068 ENA PRJEB67998 ERS16595005 MN00068 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 34774516 ERR12206684 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/084/ERR12206684/ERR12206684.fastq.gz a2d5742ace17d374eb23c901e2006b88 1766856188 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00069 ENA PRJEB67998 ERS16595000 MN00069 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 16296410 ERR12206679 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/079/ERR12206679/ERR12206679.fastq.gz 92f08e6406dadeb895245000662072c0 695960358 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN00346 ENA PRJEB67998 ERS16595015 MN00346 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 472422899 ERR12206694 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/094/ERR12206694/ERR12206694.fastq.gz 2c8627452380d03246da17e6e5814a65 20230959642 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN01701 ENA PRJEB67998 ERS16594998 MN01701 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 293566149 ERR12206677 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/077/ERR12206677/ERR12206677.fastq.gz 8d0623dc04e10d0779358bf8178c365d 9768291581 +Bozzi2024 2024 10.1038/s41598-023-40246-x MN1943 ENA PRJEB67998 ERS16595001 MN1943 double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 26332773 ERR12206680 ftp.sra.ebi.ac.uk/vol1/fastq/ERR122/080/ERR12206680/ERR12206680.fastq.gz 83ba586fa804c20aac7a3299a755cc62 1002741128 +Bozzi2024 2024 10.1038/s41598-023-40246-x H10_P ENA PRJEB18722 ERS1485688 H10_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 1969191 ERR1777519 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/009/ERR1777519/ERR1777519.fastq.gz 4806e5a4b8f976079c187cc5efa2dae8 84218155 +Bozzi2024 2024 10.1038/s41598-023-40246-x H10_T ENA PRJEB18722 ERS1485690 H10_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 2576499 ERR1777521 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/001/ERR1777521/ERR1777521.fastq.gz d306ddeb663b2da381609d4d19babc89 103453734 +Bozzi2024 2024 10.1038/s41598-023-40246-x H2_P ENA PRJEB18722 ERS1485694 H2_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777525 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/005/ERR1777525/ERR1777525.fastq.gz 0a564cf7af305b294c0d3ac1ec8a23f3 137404389 +Bozzi2024 2024 10.1038/s41598-023-40246-x H2_T ENA PRJEB18722 ERS1485696 H2_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777527 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/007/ERR1777527/ERR1777527.fastq.gz 591c2709393088585eacf2ca100a5632 155308768 +Bozzi2024 2024 10.1038/s41598-023-40246-x H3_S ENA PRJEB18722 ERS1485698 H3_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777529 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/009/ERR1777529/ERR1777529.fastq.gz 56fe5bf53162d5609eade9db3bcd88d4 149295352 +Bozzi2024 2024 10.1038/s41598-023-40246-x H4_P ENA PRJEB18722 ERS1485700 H4_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777531 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/001/ERR1777531/ERR1777531.fastq.gz b117c7a2f196bd76b75efd2609baf351 134749769 +Bozzi2024 2024 10.1038/s41598-023-40246-x H5_T ENA PRJEB18722 ERS1485705 H5_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777536 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/006/ERR1777536/ERR1777536.fastq.gz 330b5384d2070963786c5174eec7ba33 147975496 +Bozzi2024 2024 10.1038/s41598-023-40246-x H7_P ENA PRJEB18722 ERS1485709 H7_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777540 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/000/ERR1777540/ERR1777540.fastq.gz 4004a0d5dfddfaf019c0983ae362806c 140440673 +Bozzi2024 2024 10.1038/s41598-023-40246-x H8_P ENA PRJEB18722 ERS1485712 H8_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777543 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/003/ERR1777543/ERR1777543.fastq.gz b88af542eca4128b0ca9e4f153886302 140951663 +Bozzi2024 2024 10.1038/s41598-023-40246-x V10_T ENA PRJEB18722 ERS1485718 V10_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777549 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/009/ERR1777549/ERR1777549.fastq.gz baf2a30be4627947f55be0039aea6003 192503916 +Bozzi2024 2024 10.1038/s41598-023-40246-x V11_P ENA PRJEB18722 ERS1485719 V11_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777550 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/000/ERR1777550/ERR1777550.fastq.gz 6c89a1e6b74b6db84a967b1d7a3e5e09 169750850 +Bozzi2024 2024 10.1038/s41598-023-40246-x V1_P ENA PRJEB18722 ERS1485721 V1_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777552 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/002/ERR1777552/ERR1777552.fastq.gz ea6c4ebfb9639f25397874e6b59810e4 170946497 +Bozzi2024 2024 10.1038/s41598-023-40246-x V1_T ENA PRJEB18722 ERS1485722 V1_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777553 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/003/ERR1777553/ERR1777553.fastq.gz ab551a25f258138d8f8e70e62ad6a77f 170873100 +Bozzi2024 2024 10.1038/s41598-023-40246-x V2_T ENA PRJEB18722 ERS1485724 V2_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777555 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/005/ERR1777555/ERR1777555.fastq.gz 1cb8e7191b76df89efa7a9d3df02a61a 192882043 +Bozzi2024 2024 10.1038/s41598-023-40246-x V4_P ENA PRJEB18722 ERS1485727 V4_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777558 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/008/ERR1777558/ERR1777558.fastq.gz 4c0077c666d9fcfec1cde2a6a127c2d9 174703955 +Bozzi2024 2024 10.1038/s41598-023-40246-x V6_T ENA PRJEB18722 ERS1485732 V6_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777563 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/003/ERR1777563/ERR1777563.fastq.gz 4b6552901c8152b3687f1afeb96d2141 149161358 +Bozzi2024 2024 10.1038/s41598-023-40246-x V7_T ENA PRJEB18722 ERS1485734 V7_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777565 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/005/ERR1777565/ERR1777565.fastq.gz a9c428c080a0fccfc31ccaf4f2a7d3b0 165288978 +Bozzi2024 2024 10.1038/s41598-023-40246-x V9_T ENA PRJEB18722 ERS1485738 V9_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777569 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/009/ERR1777569/ERR1777569.fastq.gz c36d5312e9792aed265b69fe9192f9b7 220684796 +Bozzi2024 2024 10.1038/s41598-023-40246-x H10_S ENA PRJEB18722 ERS1485689 H10_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 3403464 ERR1777520 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/000/ERR1777520/ERR1777520.fastq.gz 8e29052a204658d15a0d8871fd79f6ea 106424195 +Bozzi2024 2024 10.1038/s41598-023-40246-x H1_P ENA PRJEB18722 ERS1485691 H1_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777522 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/002/ERR1777522/ERR1777522.fastq.gz 5fa41875bcd8e08bc1241c9e3d0a2490 132291555 +Bozzi2024 2024 10.1038/s41598-023-40246-x H1_T ENA PRJEB18722 ERS1485693 H1_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777524 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/004/ERR1777524/ERR1777524.fastq.gz dd3c5abb1eed6923aad43381a0180ab9 144483331 +Bozzi2024 2024 10.1038/s41598-023-40246-x H5_S ENA PRJEB18722 ERS1485704 H5_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 2887515 ERR1777535 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/005/ERR1777535/ERR1777535.fastq.gz 9cdcddd9c3b0c04630b655b3fee861b4 124268668 +Bozzi2024 2024 10.1038/s41598-023-40246-x H6_T ENA PRJEB18722 ERS1485708 H6_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777539 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/009/ERR1777539/ERR1777539.fastq.gz 6886d401499fb6ec3ff0403d9eaff5e7 131451664 +Bozzi2024 2024 10.1038/s41598-023-40246-x H8_T ENA PRJEB18722 ERS1485714 H8_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777545 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/005/ERR1777545/ERR1777545.fastq.gz af5c8404925e7088f7710834e3802bcc 142873018 +Bozzi2024 2024 10.1038/s41598-023-40246-x H9_P ENA PRJEB18722 ERS1485715 H9_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777546 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/006/ERR1777546/ERR1777546.fastq.gz 3b19e91c9f3ccf603bb89f4e2242ed02 149505252 +Bozzi2024 2024 10.1038/s41598-023-40246-x V2_P ENA PRJEB18722 ERS1485723 V2_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777554 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/004/ERR1777554/ERR1777554.fastq.gz 828c3f8bbdc85cbc7ac90e9409823691 169553191 +Bozzi2024 2024 10.1038/s41598-023-40246-x V3_T ENA PRJEB18722 ERS1485726 V3_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777557 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/007/ERR1777557/ERR1777557.fastq.gz 68166f49bcb2163f98152b2ec2bf83ef 203184689 +Bozzi2024 2024 10.1038/s41598-023-40246-x V4_T ENA PRJEB18722 ERS1485728 V4_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777559 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/009/ERR1777559/ERR1777559.fastq.gz 5f6f4302ffa1a131c7bd2253677afd08 147997278 +Bozzi2024 2024 10.1038/s41598-023-40246-x V5_P ENA PRJEB18722 ERS1485729 V5_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777560 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/000/ERR1777560/ERR1777560.fastq.gz 87b68a0421abe1c01fe98acb3489f643 175230588 +Bozzi2024 2024 10.1038/s41598-023-40246-x V6_P ENA PRJEB18722 ERS1485731 V6_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777562 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/002/ERR1777562/ERR1777562.fastq.gz 90149a71159da13d63a58ea53166d1c1 172934284 +Bozzi2024 2024 10.1038/s41598-023-40246-x V7_P ENA PRJEB18722 ERS1485733 V7_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777564 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/004/ERR1777564/ERR1777564.fastq.gz 183a3f0758c42f251aee5bc6f0338f0b 178326323 +Bozzi2024 2024 10.1038/s41598-023-40246-x V8_P ENA PRJEB18722 ERS1485735 V8_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777566 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/006/ERR1777566/ERR1777566.fastq.gz a7678244e70413365b9e9107f13284e9 172335078 +Bozzi2024 2024 10.1038/s41598-023-40246-x V8_T ENA PRJEB18722 ERS1485736 V8_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777567 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/007/ERR1777567/ERR1777567.fastq.gz 033565fd19dc4c838ab3cd8b311872c2 188294390 +Bozzi2024 2024 10.1038/s41598-023-40246-x H1_S ENA PRJEB18722 ERS1485692 H1_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777523 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/003/ERR1777523/ERR1777523.fastq.gz eb2a615170d1a2a6263580811d5da4ab 137155726 +Bozzi2024 2024 10.1038/s41598-023-40246-x H2_S ENA PRJEB18722 ERS1485695 H2_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777526 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/006/ERR1777526/ERR1777526.fastq.gz 6504d629aa9a0f34c289d88aadf41b30 144693552 +Bozzi2024 2024 10.1038/s41598-023-40246-x H3_P ENA PRJEB18722 ERS1485697 H3_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777528 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/008/ERR1777528/ERR1777528.fastq.gz 7d924557ebaf13380982f3df57bd0057 149981713 +Bozzi2024 2024 10.1038/s41598-023-40246-x H3_T ENA PRJEB18722 ERS1485699 H3_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777530 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/000/ERR1777530/ERR1777530.fastq.gz e7bafa9b2480a5c4618169a07d35a8bc 157682427 +Bozzi2024 2024 10.1038/s41598-023-40246-x H4_S ENA PRJEB18722 ERS1485701 H4_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777532 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/002/ERR1777532/ERR1777532.fastq.gz 3ca620f094a71532a0d93b47b1ade66b 150987147 +Bozzi2024 2024 10.1038/s41598-023-40246-x H4_T ENA PRJEB18722 ERS1485702 H4_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777533 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/003/ERR1777533/ERR1777533.fastq.gz 447fc4a8fcdc33e97cfff84be444d518 158897813 +Bozzi2024 2024 10.1038/s41598-023-40246-x H5_P ENA PRJEB18722 ERS1485703 H5_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 2066219 ERR1777534 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/004/ERR1777534/ERR1777534.fastq.gz df060ed5d72f1340a40a6de2bf72560f 79137145 +Bozzi2024 2024 10.1038/s41598-023-40246-x H6_P ENA PRJEB18722 ERS1485706 H6_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777537 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/007/ERR1777537/ERR1777537.fastq.gz 2eee13f7882ea2f5d70f2c4db996ee90 148547656 +Bozzi2024 2024 10.1038/s41598-023-40246-x H6_S ENA PRJEB18722 ERS1485707 H6_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 3971984 ERR1777538 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/008/ERR1777538/ERR1777538.fastq.gz 202d21202a5e67b1ed098e3d96750fe8 137421999 +Bozzi2024 2024 10.1038/s41598-023-40246-x H7_S ENA PRJEB18722 ERS1485710 H7_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 3944221 ERR1777541 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/001/ERR1777541/ERR1777541.fastq.gz 0b9d34c928ac5942ce614b704d7efef0 140398815 +Bozzi2024 2024 10.1038/s41598-023-40246-x H7_T ENA PRJEB18722 ERS1485711 H7_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777542 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/002/ERR1777542/ERR1777542.fastq.gz ac5585d7534f0e8d9a4a2bb7323f161b 152708452 +Bozzi2024 2024 10.1038/s41598-023-40246-x H8_S ENA PRJEB18722 ERS1485713 H8_S double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 2141948 ERR1777544 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/004/ERR1777544/ERR1777544.fastq.gz 7ce712e6524cc296928d96d1b9f8dbd0 70911496 +Bozzi2024 2024 10.1038/s41598-023-40246-x H9_T ENA PRJEB18722 ERS1485716 H9_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777547 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/007/ERR1777547/ERR1777547.fastq.gz 5b89fe79668860fde638c44ab762d7b4 135379904 +Bozzi2024 2024 10.1038/s41598-023-40246-x V10_P ENA PRJEB18722 ERS1485717 V10_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777548 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/008/ERR1777548/ERR1777548.fastq.gz 28822b97bc84ff1bfc663082df8c810b 170609451 +Bozzi2024 2024 10.1038/s41598-023-40246-x V11_T ENA PRJEB18722 ERS1485720 V11_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777551 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/001/ERR1777551/ERR1777551.fastq.gz cd2f00158fea3bc7476428d9fc159e0d 188022380 +Bozzi2024 2024 10.1038/s41598-023-40246-x V3_P ENA PRJEB18722 ERS1485725 V3_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777556 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/006/ERR1777556/ERR1777556.fastq.gz 262b72279b0e4778786907e8b23a80c9 174539467 +Bozzi2024 2024 10.1038/s41598-023-40246-x V5_T ENA PRJEB18722 ERS1485730 V5_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777561 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/001/ERR1777561/ERR1777561.fastq.gz 42c22f3b88feeaf5d84c8e493783c245 156582293 +Bozzi2024 2024 10.1038/s41598-023-40246-x V9_P ENA PRJEB18722 ERS1485737 V9_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777568 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/008/ERR1777568/ERR1777568.fastq.gz 10396cb2aad632e275194c2f9cccd636 174445223 diff --git a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv index 72c69176e..c51698a14 100644 --- a/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv +++ b/ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv @@ -1469,3 +1469,73 @@ Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 U Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 27 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976921 Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 28 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976912 Austin2024 2024 10.1038/s41598-024-64818-7 St. Louis and Missouri 38.65 -90.26 USA ARP 29 S Homo sapiens 100 10.1038/s41598-024-64818-7 oral dental calculus SRA PRJNA1056444 SRS19976942 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mutum -19.82 -41.44 Brazil MN0003 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595011 +Bozzi2024 2024 10.1038/s41598-023-40246-x Rio Doce -20.24 -42.9 Brazil MN0008 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue bone ENA PRJEB67998 ERS16595020 +Bozzi2024 2024 10.1038/s41598-023-40246-x Rio Mucuri -17.51 -41.34 Brazil MN0009 Homo sapiens 200 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595017 +Bozzi2024 2024 10.1038/s41598-023-40246-x Itamacuari -18.03 -41.68 Brazil MN00010 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16594997 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mutum -19.82 -41.44 Brazil MN00013 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595018 +Bozzi2024 2024 10.1038/s41598-023-40246-x Itapimirim -20 -40 Brazil MN00016 Homo sapiens 400 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595006 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mutum -19.82 -41.44 Brazil MN00021 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595013 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mutum -19.82 -41.44 Brazil MN00022 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595004 +Bozzi2024 2024 10.1038/s41598-023-40246-x Rio Mucuri -17.51 -41.34 Brazil MN00023 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595003 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mutum -19.82 -41.44 Brazil MN00039 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595002 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mutum -19.82 -41.44 Brazil MN00045 Homo sapiens 200 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595007 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mucuri (Itambacuari) -18.03 -41.68 Brazil MN00056 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595019 +Bozzi2024 2024 10.1038/s41598-023-40246-x Rio Doce -20.24 -42.9 Brazil MN00064 Homo sapiens 200 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595009 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown -13 -50 Brazil MN00067 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595014 +Bozzi2024 2024 10.1038/s41598-023-40246-x Mutum -19.82 -41.44 Brazil MN00068 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595005 +Bozzi2024 2024 10.1038/s41598-023-40246-x Rio Mucuri -17.51 -41.34 Brazil MN00069 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595000 +Bozzi2024 2024 10.1038/s41598-023-40246-x Rio Prado -16.61 -40.57 Brazil MN00346 Homo sapiens 100 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595015 +Bozzi2024 2024 10.1038/s41598-023-40246-x Laguna -28.48 -48.78 Brazil MN01701 Homo sapiens 1900 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16594998 +Bozzi2024 2024 10.1038/s41598-023-40246-x Serra de Babilonia -18 -44 Brazil MN1943 Homo sapiens 900 10.1101/2022.01.27.477466 skeletal tissue tooth ENA PRJEB67998 ERS16595001 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H10_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485688 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H10_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485690 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H2_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485694 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H2_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485696 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H3_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485698 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H4_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485700 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H5_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485705 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H7_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485709 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H8_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485712 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V10_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485718 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V11_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485719 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V1_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485721 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V1_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485722 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V2_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485724 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V4_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485727 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V6_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485732 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V7_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485734 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V9_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485738 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H10_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485689 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H1_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485691 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H1_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485693 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H5_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485704 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H6_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485708 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H8_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485714 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H9_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485715 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V2_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485723 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V3_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485726 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V4_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485728 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V5_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485729 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V6_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485731 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V7_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485733 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V8_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485735 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V8_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485736 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H1_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485692 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H2_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485695 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H3_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485697 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H3_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485699 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H4_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485701 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H4_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485702 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H5_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485703 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H6_P Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485706 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H6_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485707 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H7_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485710 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H7_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485711 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H8_S Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485713 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA Denmark H9_T Homo sapiens 200 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485716 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V10_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485717 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V11_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485720 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V3_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485725 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V5_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485730 +Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V9_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485737