Merge pull request #1084 from SPAAM-community/White2021

White2021
SPAAM-community · Oct 2, 2024 · 705bc8e · 705bc8e
2 parents bcdb676 + 4ea1d15
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -15,6 +15,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).
 
 #### Ancient Single Genome: Host Associated
 
+- White 2021 10.3390/biology10121324 (added by @DianaSpurite, @jfy133, and @alexhbnr)
+
 #### Ancient Metagenome: Environmental
 
 ### Changed
@@ -198,7 +200,7 @@ and this project follows to [Calendar Versioning](https://calver.org/).
 - Vågene 2022 10.1038/s41467-022-28562-8 (added by @DianaSpurite)
 - Austin 2022 10.1038/s42003-022-03890-z (added by @DianaSpurite)
 - Guellil 2022 10.1126/sciadv.abo4435 (added by @DianaSpurite)
-- Long 2022 10.1038/s42003-022-03527-1 (added by @jfy133 )
+- Long 2022 10.1038/s42003-022-03527-1 (added by @jfy133)
 
 #### Ancient Metagenome: Environmental
 

diff --git a/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
@@ -3105,3 +3105,9 @@ Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200
 Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L1	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	9413628	ERR6466108	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/008/ERR6466108/ERR6466108.fastq.gz	082fa661d3351c0fac22e2e922dc3795	342573885
 Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L2	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	123717709	ERR6466109	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/009/ERR6466109/ERR6466109.fastq.gz	267fe0d4b684a1cf765ae560abdfbbc3	4352735230
 Lebrasseur2024	2024	10.1038/s41586-021-04018-9	UR17x29	ENA	PRJEB44430	ERS7256200	L4	double	AccuPrime Pfx DNA	half-udg	Illumina HiSeq 4000	SINGLE	WGS	141415855	ERR6466111	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR646/001/ERR6466111/ERR6466111.fastq.gz	7bed95eb12f3d17c93fd6d47c5edfd04	4974034411
+White2021	2021	10.3390/biology10121324	B2_B3	ENA	PRJEB49091	ERS9769380	L022	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	172363072	ERR13663673	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/073/ERR13663673/ERR13663673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/073/ERR13663673/ERR13663673_2.fastq.gz	93fe32a1e7baafdbe2ab5fde69a6d998;47cf6d5fec371200015a493a0839c828	4381516936;4643855551
+White2021	2021	10.3390/biology10121324	B2_B5	ENA	PRJEB49091	ERS9769381	L023	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	165002236	ERR13663674	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/074/ERR13663674/ERR13663674_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/074/ERR13663674/ERR13663674_2.fastq.gz	370f2ee1d8d3929d4999d1ef6ba795f5;0390ac309d270d11f8ef01d1a98fe74f	4143803128;4491981331
+White2021	2021	10.3390/biology10121324	B2_B6	ENA	PRJEB49091	ERS9769382	L024	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	164114498	ERR13663676	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/076/ERR13663676/ERR13663676_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/076/ERR13663676/ERR13663676_2.fastq.gz	abafcc2b76f2d56f01e5c6ed95f0f20c;e65f30975fa8ff540a9083b77b25646b	4147933772;4482524602
+White2021	2021	10.3390/biology10121324	B2_B6	ENA	PRJEB49091	ERS9769382	L024-B	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	108865268	ERR13663675	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/075/ERR13663675/ERR13663675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/075/ERR13663675/ERR13663675_2.fastq.gz	9f698e07345a859feb34cb4e99a55d11;d7d70554b02c6f5dc7952fd2485c163c	2589844121;2788114713
+White2021	2021	10.3390/biology10121324	B2_B7	ENA	PRJEB49091	ERS9769383	L025-B	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	81293780	ERR13663677	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/077/ERR13663677/ERR13663677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/077/ERR13663677/ERR13663677_2.fastq.gz	00eb8d335bfedd6a0569e708bb5be5f8;3b34fc20b2c7a012ce5d25d177d55dc8	2074741912;2130629421
+White2021	2021	10.3390/biology10121324	B2_B7	ENA	PRJEB49091	ERS9769383	L025	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	179780446	ERR13663678	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/078/ERR13663678/ERR13663678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/078/ERR13663678/ERR13663678_2.fastq.gz	47149ec413c0a14645b7a838fc088507;1372803ee3d494b1876b82982c69d10c	4575913200;4879999751
diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
@@ -705,3 +705,15 @@ Sun2024	2024	10.1038/s41467-024-47358-6	QuanErGou	43.65	92.16	China	XBQM46	Homo
 Sun2024	2024	10.1038/s41467-024-47358-6	QuanErGou	43.65	92.16	China	XBQM125	Homo sapiens	2900	10.1038/s41467-024-47358-6	virus	Hepatitis B virus	bone	chromosome	GSA	reference_aligned	PRJCA020853	SAMC3135944
 Sun2024	2024	10.1038/s41467-024-47358-6	BeiFang	37.13	81.61	China	11KBM13	Homo sapiens	3400	10.1038/s41467-024-47358-6	virus	Hepatitis B virus	tooth	chromosome	GSA	reference_aligned	PRJCA020853	SAMC3135945
 Lebrasseur2024	2024	10.1093/ve/vead087	Kamennyi Ambar 5	52.833	60.367	Russia	UR17x29	Equus caballus	3800	10.1038/s41586-021-04018-9	virus	Equid herpesvirus 4	bone	chromosome	ENA	raw	PRJEB44430	ERS7256200
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B3	Homo sapiens	200	10.3390/biology10121324	bacteria	Tannerella forsythia	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769380
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B5	Homo sapiens	200	10.3390/biology10121324	bacteria	Tannerella forsythia	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769381
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B6	Homo sapiens	200	10.3390/biology10121324	bacteria	Tannerella forsythia	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769382
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B7	Homo sapiens	200	10.3390/biology10121324	bacteria	Tannerella forsythia	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769383
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B3	Homo sapiens	200	10.3390/biology10121324	bacteria	Treponema denticola	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769380
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B5	Homo sapiens	200	10.3390/biology10121324	bacteria	Treponema denticola	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769381
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B6	Homo sapiens	200	10.3390/biology10121324	bacteria	Treponema denticola	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769382
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B7	Homo sapiens	200	10.3390/biology10121324	bacteria	Treponema denticola	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769383
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B3	Homo sapiens	200	10.3390/biology10121324	bacteria	Porphyromonas gingivalis	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769380
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B5	Homo sapiens	200	10.3390/biology10121324	bacteria	Porphyromonas gingivalis	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769381
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B6	Homo sapiens	200	10.3390/biology10121324	bacteria	Porphyromonas gingivalis	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769382
+White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B7	Homo sapiens	200	10.3390/biology10121324	bacteria	Porphyromonas gingivalis	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769383