C14 Majander2020 #1333

KaHea-21 · 2025-02-06T10:48:46Z

Pull Request

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Correction

For the following list(s):

ancientmetagenome-environmental (README)
ancientmetagenome-hostassociated (README)
ancientsinglegenome-hostassociated (README)

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Publication is published
- Preprints currently not accepted?
Checked the publication is not already in the database?
Checked samples in this publication are not previously published data?
- Newly re-sequenced metagenomes are OK!
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- Note: hostassociated-singlegenome may also contain whole-genome enriched data
Checked the list follows conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)?
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- Use @spaam-bot please autofill <table_name> <project_id> to get a half-filled template! May take a minute or so to get the comment with the file
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Changelog is updated to include the publication under 'Added'?

to close #1264

aidaanva

archaeological_historical_date should be "DNE"

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

github-actions · 2025-02-27T08:21:26Z

amdirt, version 1.6.5

Samples

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_samples.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_samples.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_samples.tsv is valid

Libraries

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_libraries.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_libraries.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_libraries.tsv is valid

Dates

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_dates.tsv is valid

aidaanva · 2025-02-27T08:52:47Z

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

 Schuenemann2013	2013	10.1126/science.1238286	SK2	PRJNA200950	SRS418843	TRUE	TRUE	800	FALSE	main text	1	10.1126/science.1238286	TRUE	MAMS	17404	NR	NR	NR	bone	729	23	-99999	-99999	-99999	-99999	TRUE	NR	NR	NR	NR	NR	1268	1283	-99999	cal AD	-99999	FALSE	DNE	DNE	NA	NA	NA	NA
 Schuenemann2013	2013	10.1126/science.1238286	SK8	PRJNA200950	SRS418845	TRUE	TRUE	800	FALSE	main text	2	10.1371/journal.pone.0062406	TRUE	Wk	28629	NR	NR	NR	bone	1023	80	-99999	-99999	-99999	-99999	TRUE	NR	NR	NR	NR	NR	1010	1160	-99999	cal AD	2	FALSE	DNE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119a	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35325	AMS	NR	NR	tooth	421	18	-19.7	37.4	12.3	3.2	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1450	1630	1609	cal AD	2	TRUE	TRUE	MARINE	28	11	-99999	-99999


Suggested change

Majander2020 2020 10.1016/j.cub.2020.07.058 CHS119a PRJEB35855 ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35325 AMS NR NR tooth 421 18 -19.7 37.4 12.3 3.2 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1450 1630 1609 cal AD 2 TRUE TRUE MARINE 28 11 -99999 -99999

Majander2020 2020 10.1016/j.cub.2020.07.058 CHS119 PRJEB35855 ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35325 AMS NR NR tooth 421 18 -19.7 37.4 12.3 3.2 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1450 1630 1609 cal AD 2 TRUE TRUE MARINE 28 11 -99999 -99999

aidaanva · 2025-02-27T08:53:27Z

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

 Schuenemann2013	2013	10.1126/science.1238286	SK2	PRJNA200950	SRS418843	TRUE	TRUE	800	FALSE	main text	1	10.1126/science.1238286	TRUE	MAMS	17404	NR	NR	NR	bone	729	23	-99999	-99999	-99999	-99999	TRUE	NR	NR	NR	NR	NR	1268	1283	-99999	cal AD	-99999	FALSE	DNE	DNE	NA	NA	NA	NA
 Schuenemann2013	2013	10.1126/science.1238286	SK8	PRJNA200950	SRS418845	TRUE	TRUE	800	FALSE	main text	2	10.1371/journal.pone.0062406	TRUE	Wk	28629	NR	NR	NR	bone	1023	80	-99999	-99999	-99999	-99999	TRUE	NR	NR	NR	NR	NR	1010	1160	-99999	cal AD	2	FALSE	DNE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119a	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35325	AMS	NR	NR	tooth	421	18	-19.7	37.4	12.3	3.2	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1450	1630	1609	cal AD	2	TRUE	TRUE	MARINE	28	11	-99999	-99999
+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119b	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	Hela	4271	AMS	NR	NR	tooth	383	24	-19.7	37.4	12.3	3.2	FALSE	DNE	DNE	DNE	DNE	DNE	NA	NA	NA	DNE	NA	TRUE	TRUE	MARINE	28	11	-99999	-99999


Suggested change

Majander2020 2020 10.1016/j.cub.2020.07.058 CHS119b PRJEB35855 ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 TRUE Hela 4271 AMS NR NR tooth 383 24 -19.7 37.4 12.3 3.2 FALSE DNE DNE DNE DNE DNE NA NA NA DNE NA TRUE TRUE MARINE 28 11 -99999 -99999

Majander2020 2020 10.1016/j.cub.2020.07.058 CHS119 PRJEB35855 ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 TRUE Hela 4271 AMS NR NR tooth 383 24 -19.7 37.4 12.3 3.2 FALSE DNE DNE DNE DNE DNE NA NA NA DNE NA TRUE TRUE MARINE 28 11 -99999 -99999

aidaanva · 2025-02-27T08:54:34Z

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

 Schuenemann2013	2013	10.1126/science.1238286	SK2	PRJNA200950	SRS418843	TRUE	TRUE	800	FALSE	main text	1	10.1126/science.1238286	TRUE	MAMS	17404	NR	NR	NR	bone	729	23	-99999	-99999	-99999	-99999	TRUE	NR	NR	NR	NR	NR	1268	1283	-99999	cal AD	-99999	FALSE	DNE	DNE	NA	NA	NA	NA
 Schuenemann2013	2013	10.1126/science.1238286	SK8	PRJNA200950	SRS418845	TRUE	TRUE	800	FALSE	main text	2	10.1371/journal.pone.0062406	TRUE	Wk	28629	NR	NR	NR	bone	1023	80	-99999	-99999	-99999	-99999	TRUE	NR	NR	NR	NR	NR	1010	1160	-99999	cal AD	2	FALSE	DNE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119a	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35325	AMS	NR	NR	tooth	421	18	-19.7	37.4	12.3	3.2	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1450	1630	1609	cal AD	2	TRUE	TRUE	MARINE	28	11	-99999	-99999
+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119b	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	Hela	4271	AMS	NR	NR	tooth	383	24	-19.7	37.4	12.3	3.2	FALSE	DNE	DNE	DNE	DNE	DNE	NA	NA	NA	DNE	NA	TRUE	TRUE	MARINE	28	11	-99999	-99999
+Majander2020	2020	10.1016/j.cub.2020.07.058	PD28	PRJEB35855	ERS4982084,ERS4982081,ERS4982082,ERS4982083	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35328	AMS	NR	NR	bone	189	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1666	1933	1713	cal AD	2	FALSE	FALSE	DNE	NA	NA	NA	NA


Suggested change

Majander2020 2020 10.1016/j.cub.2020.07.058 PD28 PRJEB35855 ERS4982084,ERS4982081,ERS4982082,ERS4982083 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35328 AMS NR NR bone 189 18 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1666 1933 1713 cal AD 2 FALSE FALSE DNE NA NA NA NA

Majander2020 2020 10.1016/j.cub.2020.07.058 PD28 PRJEB35855 ERS4982084,ERS4982081,ERS4982082,ERS4982083 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35328 AMS NR NR bone 189 18 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1662 1933 1713 cal AD 2 FALSE FALSE DNE NA NA NA NA

Based on Figure S1

aidaanva · 2025-02-27T08:57:25Z

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119a	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35325	AMS	NR	NR	tooth	421	18	-19.7	37.4	12.3	3.2	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1450	1630	1609	cal AD	2	TRUE	TRUE	MARINE	28	11	-99999	-99999
+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119b	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	Hela	4271	AMS	NR	NR	tooth	383	24	-19.7	37.4	12.3	3.2	FALSE	DNE	DNE	DNE	DNE	DNE	NA	NA	NA	DNE	NA	TRUE	TRUE	MARINE	28	11	-99999	-99999
+Majander2020	2020	10.1016/j.cub.2020.07.058	PD28	PRJEB35855	ERS4982084,ERS4982081,ERS4982082,ERS4982083	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35328	AMS	NR	NR	bone	189	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1666	1933	1713	cal AD	2	FALSE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219a	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35326	AMS	NR	NR	bone	456	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1434	1446	1535	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA


Suggested change

Majander2020 2020 10.1016/j.cub.2020.07.058 SJ219a PRJEB35855 ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35326 AMS NR NR bone 456 18 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1434 1446 1535 cal AD 2 TRUE FALSE DNE NA NA NA NA

Majander2020 2020 10.1016/j.cub.2020.07.058 SJ219 PRJEB35855 ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35326 AMS NR NR bone 456 18 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1434 1447 NR cal AD 1 TRUE FALSE DNE NA NA NA NA

Based on Figure S1. I belive the range reported in the Table3 is a combination of all the dates.

aidaanva · 2025-02-27T08:58:49Z

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

+Majander2020	2020	10.1016/j.cub.2020.07.058	CHS119b	PRJEB35855	ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	Hela	4271	AMS	NR	NR	tooth	383	24	-19.7	37.4	12.3	3.2	FALSE	DNE	DNE	DNE	DNE	DNE	NA	NA	NA	DNE	NA	TRUE	TRUE	MARINE	28	11	-99999	-99999
+Majander2020	2020	10.1016/j.cub.2020.07.058	PD28	PRJEB35855	ERS4982084,ERS4982081,ERS4982082,ERS4982083	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35328	AMS	NR	NR	bone	189	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1666	1933	1713	cal AD	2	FALSE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219a	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35326	AMS	NR	NR	bone	456	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1434	1446	1535	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219b	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	ETH	100446	AMS	NR	NR	bone	-99999	-99999	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1429	1476	-99999	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA


Suggested change

Majander2020 2020 10.1016/j.cub.2020.07.058 SJ219b PRJEB35855 ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 TRUE ETH 100446 AMS NR NR bone -99999 -99999 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1429 1476 -99999 cal AD 2 TRUE FALSE DNE NA NA NA NA

Majander2020 2020 10.1016/j.cub.2020.07.058 SJ219 PRJEB35855 ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 TRUE ETH 100446 AMS NR NR bone -99999 -99999 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1429 1476 -99999 cal AD 2 TRUE FALSE DNE NA NA NA NA

aidaanva · 2025-02-27T08:59:33Z

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

+Majander2020	2020	10.1016/j.cub.2020.07.058	PD28	PRJEB35855	ERS4982084,ERS4982081,ERS4982082,ERS4982083	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35328	AMS	NR	NR	bone	189	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1666	1933	1713	cal AD	2	FALSE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219a	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35326	AMS	NR	NR	bone	456	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1434	1446	1535	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219b	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	ETH	100446	AMS	NR	NR	bone	-99999	-99999	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1429	1476	-99999	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219c	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	FALSE	ETH	101915	AMS	NR	NR	wood	-99999	-99999	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1463	1635	-99999	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA


Suggested change

Majander2020 2020 10.1016/j.cub.2020.07.058 SJ219c PRJEB35855 ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 FALSE ETH 101915 AMS NR NR wood -99999 -99999 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1463 1635 -99999 cal AD 2 TRUE FALSE DNE NA NA NA NA

Majander2020 2020 10.1016/j.cub.2020.07.058 SJ219 PRJEB35855 ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111 TRUE TRUE DNE TRUE main text 1 10.1016/j.cub.2020.07.058 FALSE ETH 101915 AMS NR NR wood -99999 -99999 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1463 1635 -99999 cal AD 2 TRUE FALSE DNE NA NA NA NA

aidaanva · 2025-02-27T09:00:19Z

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv

+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219a	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	35326	AMS	NR	NR	bone	456	18	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1434	1446	1535	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219b	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	TRUE	ETH	100446	AMS	NR	NR	bone	-99999	-99999	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1429	1476	-99999	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	SJ219c	PRJEB35855	ERS4982086,ERS4982087,ERS4982085,ERS4982089,ERS4982090,ERS4982088,ERS4982091,ERS4982092,ERS4982093,ERS4982094,ERS4982095,ERS4982096,ERS4982097,ERS4982098,ERS4982099,ERS4982100,ERS4982101,ERS4982102,ERS4982103,ERS4982104,ERS4982105,ERS4982106,ERS4982107,ERS4982108,ERS4982109,ERS4982110,ERS4982113,ERS4982112,ERS4982111	TRUE	TRUE	DNE	TRUE	main text	1	10.1016/j.cub.2020.07.058	FALSE	ETH	101915	AMS	NR	NR	wood	-99999	-99999	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1463	1635	-99999	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA
+Majander2020	2020	10.1016/j.cub.2020.07.058	KM14-7	PRJEB35855	ERS4982054,ERS4982053,ERS4982055,ERS4982056,ERS4982057,ERS4982058,ERS4982059,ERS4982060,ERS4982061,ERS4982062,ERS4982063,ERS4982064,ERS4982065,ERS4982066,ERS4982067,ERS4982068,ERS4982069,ERS4982070,ERS4982071,ERS4982072,ERS4982073,ERS4982074,ERS4982075,ERS4982076,ERS4982077,ERS4982078,ERS4982079,ERS4982080	TRUE	TRUE	DNE	FALSE	main text	1	10.1016/j.cub.2020.07.058	TRUE	MAMS	33918	AMS	NR	NR	bone	338	23	-99999	-99999	-99999	-99999	TRUE	IntCal13	OxCal	4.3.2	NR	10.1111/j.1475-4754.2008.00457.x	1494	1631	-99999	cal AD	2	TRUE	FALSE	DNE	NA	NA	NA	NA


Suggested change

Majander2020 2020 10.1016/j.cub.2020.07.058 KM14-7 PRJEB35855 ERS4982054,ERS4982053,ERS4982055,ERS4982056,ERS4982057,ERS4982058,ERS4982059,ERS4982060,ERS4982061,ERS4982062,ERS4982063,ERS4982064,ERS4982065,ERS4982066,ERS4982067,ERS4982068,ERS4982069,ERS4982070,ERS4982071,ERS4982072,ERS4982073,ERS4982074,ERS4982075,ERS4982076,ERS4982077,ERS4982078,ERS4982079,ERS4982080 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 33918 AMS NR NR bone 338 23 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1494 1631 -99999 cal AD 2 TRUE FALSE DNE NA NA NA NA

Majander2020 2020 10.1016/j.cub.2020.07.058 KM14-7 PRJEB35855 ERS4982054,ERS4982053,ERS4982055,ERS4982056,ERS4982057,ERS4982058,ERS4982059,ERS4982060,ERS4982061,ERS4982062,ERS4982063,ERS4982064,ERS4982065,ERS4982066,ERS4982067,ERS4982068,ERS4982069,ERS4982070,ERS4982071,ERS4982072,ERS4982073,ERS4982074,ERS4982075,ERS4982076,ERS4982077,ERS4982078,ERS4982079,ERS4982080 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 33918 AMS NR NR bone 338 23 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1494 1632 -99999 cal AD 1 TRUE FALSE DNE NA NA NA NA

Based on Figure S1

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C14 Majander2020 #1333

C14 Majander2020 #1333

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	Majander2020 2020 10.1016/j.cub.2020.07.058 CHS119a PRJEB35855 ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35325 AMS NR NR tooth 421 18 -19.7 37.4 12.3 3.2 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1450 1630 1609 cal AD 2 TRUE TRUE MARINE 28 11 -99999 -99999
	Majander2020 2020 10.1016/j.cub.2020.07.058 CHS119 PRJEB35855 ERS4982024,ERS4982025,ERS4982023,ERS4982027,ERS4982028,ERS4982026,ERS4982029,ERS4982032,ERS4982033,ERS4982034,ERS4982035,ERS4982036,ERS4982037,ERS4982038,ERS4982039,ERS4982040,ERS4982041,ERS4982042,ERS4982043,ERS4982044,ERS4982045,ERS4982046,ERS4982047,ERS4982048,ERS4982049,ERS4982050,ERS4982052,ERS4982051,ERS4982030,ERS4982031 TRUE TRUE DNE FALSE main text 1 10.1016/j.cub.2020.07.058 TRUE MAMS 35325 AMS NR NR tooth 421 18 -19.7 37.4 12.3 3.2 TRUE IntCal13 OxCal 4.3.2 NR 10.1111/j.1475-4754.2008.00457.x 1450 1630 1609 cal AD 2 TRUE TRUE MARINE 28 11 -99999 -99999

C14 Majander2020 #1333

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C14 Majander2020 #1333

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github-actions bot commented Feb 27, 2025

Samples

Ancient Metagenome Host Associated

Ancient Single Genome Host Associated

Ancient Metagenome Environmental

Libraries

Ancient Metagenome Host Associated

Ancient Single Genome Host Associated

Ancient Metagenome Environmental

Dates

Ancient Single Genome Host Associated

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