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C14Rasmussen2015 #1346

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@KaHea-21 KaHea-21 commented Feb 6, 2025 •
edited by mlo89
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Pull Request

To update issue #1226

C14 data needs reviewing and entered into missing fields

This PR is for a

For the following list(s):

  • ancientmetagenome-environmental (README)
  • ancientmetagenome-hostassociated (README)
  • ancientsinglegenome-hostassociated (README)

This is to close

PR Workflow

  1. Open this PR with sample metadata on the samples metadata sheet (:tada: you're already here!)
  2. Wait for checks for sample metdata to pass
  3. (If checks fail) make corrections, and push changes to this branch (no need to open a new PR!)
  4. (Once passed) comment on this PR @spaam-bot please autofill <table_name> <project_id> to get a half-filled template! (may take a minute or so to get the comment with the file)
  5. Fill in the template, and verify autofilled data correct!
  6. Once filled in, append(!) the new rows from the TEMPLATE file to the end of the corresponding library metadata file, and update this PR
  7. Wait for checks for library metadata to pass
  8. Request review!

Pre-review checklist (new publications)

  • Publication is published
    • Preprints currently not accepted?
  • Checked the publication is not already in the database?
  • Checked samples in this publication are not previously published data?
    • Newly re-sequenced metagenomes are OK!
  • Samples are shotgun metagenomes and not amplicon data
    • Note: hostassociated-singlegenome may also contain whole-genome enriched data
  • Checked the list follows conventions as described in the corresponding sample type's README file (e.g. using ERS/SRS accession codes for ENA/SRA)?
  • Once sample table validation completed Library metadata has been added
    • Use @spaam-bot please autofill <table_name> <project_id> to get a half-filled template! May take a minute or so to get the comment with the file
    • Fill in template, and verify autofill data correct!
    • Once filled in, append(!) the new rows to the end of the corresponding library metadata file
  • Changelog is updated to include the publication under 'Added'?

@mlo89 mlo89 self-assigned this Feb 7, 2025
@mlo89 mlo89 requested a review from aidaanva February 7, 2025 14:52
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amdirt, version 1.6.5

Samples

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_samples.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_samples.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_samples.tsv is valid

Libraries

Ancient Metagenome Host Associated

ancientmetagenome-hostassociated_libraries.tsv is valid

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_libraries.tsv is valid

Ancient Metagenome Environmental

ancientmetagenome-environmental_libraries.tsv is valid

Dates

Ancient Single Genome Host Associated

ancientsinglegenome-hostassociated_dates.tsv is valid

aidaanva
aidaanva requested changes Feb 28, 2025
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Once the changes has been checked and applied @mlo89, tag me and I will rereview!

CHANGELOG.md Outdated
@@ -13,7 +13,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).

#### Ancient Single Genome: Host Associated

- Added and Fixed C14 info for Warinner2014 10.1038/ng.2906 (added by @biancamariabonucci)
- C14 Rasmussen 2015 10.1016/j.cell.2015.10.009 (added by @mlo89)
- C14 Warinner2014 10.1038/ng.2906 (added by @biancamariabonucci)
- C14 Key2020 10.1038/s41559-020-1106-9 (added by @iseultj)

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Suggested change

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
@@ -1,4 +1,5 @@
project_name publication_year data_publication_doi sample_name archive_project archive_sample_accession date_information_present date_is_radiocarbon archaeological_historical_date multiple_dates reference_location reference_citation_depth primary_secondary_reference_citation_doi direct_dating radiocarbon_lab_code radiocarbon_lab_sample_id spectrometry_type pretreatment_reported pretreatment_type sample_material uncalibrated_date uncalibrated_uncertainty_plus_minus delta_13c carbon_perc delta_15n carbon_nitrogen_ratio calibration_reported calibration_curve calibration_software calibration_software_version calibration_software_settings calibration_software_citation_doi calibrated_range_lower calibrated_range_upper calibrated_range_median calibrated_range_suffix calibrated_range_sigma reservoir_offset_mentioned reservoir_offset_applied reservoir_offset_type reservoir_offset_reported reservoir_offset_reported_sd reservoir_aquatic_carbon_perc reservoir_aquatic_carbon_perc_sd

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ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Schuenemann2013 2013 10.1126/science.1238286 SK2 PRJNA200950 SRS418843 TRUE TRUE 800 FALSE main text 1 10.1126/science.1238286 TRUE MAMS 17404 NR NR NR bone 729 23 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1268 1283 -99999 cal AD -99999 FALSE DNE DNE NA NA NA NA
Schuenemann2013 2013 10.1126/science.1238286 SK8 PRJNA200950 SRS418845 TRUE TRUE 800 FALSE main text 2 10.1371/journal.pone.0062406 TRUE Wk 28629 NR NR NR bone 1023 80 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1010 1160 -99999 cal AD 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 FALSE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

The genome was retrieve from a teeth but the dating was done with a bone from the same individual

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Schuenemann2013 2013 10.1126/science.1238286 SK2 PRJNA200950 SRS418843 TRUE TRUE 800 FALSE main text 1 10.1126/science.1238286 TRUE MAMS 17404 NR NR NR bone 729 23 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1268 1283 -99999 cal AD -99999 FALSE DNE DNE NA NA NA NA
Schuenemann2013 2013 10.1126/science.1238286 SK8 PRJNA200950 SRS418845 TRUE TRUE 800 FALSE main text 2 10.1371/journal.pone.0062406 TRUE Wk 28629 NR NR NR bone 1023 80 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1010 1160 -99999 cal AD 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*1 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30991 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*1 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30991 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 NR OxA 30990 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999

Unsure whether the date is from the exact teeth where the genome was obtained

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*1 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30991 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*2 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30992 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*2 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30992 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 NR OxA 30991 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*1 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30991 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*2 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30992 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

For this individual no reservoir effect was mentioned in the supplement

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Schuenemann2013 2013 10.1126/science.1238286 SK2 PRJNA200950 SRS418843 TRUE TRUE 800 FALSE main text 1 10.1126/science.1238286 TRUE MAMS 17404 NR NR NR bone 729 23 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1268 1283 -99999 cal AD -99999 FALSE DNE DNE NA NA NA NA
Schuenemann2013 2013 10.1126/science.1238286 SK8 PRJNA200950 SRS418845 TRUE TRUE 800 FALSE main text 2 10.1371/journal.pone.0062406 TRUE Wk 28629 NR NR NR bone 1023 80 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1010 1160 -99999 cal AD 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*1 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30991 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*2 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30992 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*2 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30992 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE509 PRJEB10885 ERS848976 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31221 AMS NR NR tooth 4186 27 -18.8 -99999 11.4 3.2 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2887 2677 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE509 PRJEB10885 ERS848976 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31221 AMS NR NR tooth 4186 27 -18.8 -99999 11.4 3.2 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2887 2677 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE509 PRJEB10885 ERS848976 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31221 AMS NR NR tooth 4186 27 -18.8 -99999 11.4 3.2 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2887 2677 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE509 PRJEB10885 ERS848976 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31221 AMS NR NR tooth 4186 27 -18.8 -99999 11.4 3.2 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2887 2677 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE511 PRJEB10885 ERS848977 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31568 AMS NR NR tooth 4224 36 -18.6 -99999 10.4 3.3 TRUE IntCal13 CalPal 4.2 NR 10.1017/S0033822200033865 2909 2679 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Suggested change
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE511 PRJEB10885 ERS848977 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31568 AMS NR NR tooth 4224 36 -18.6 -99999 10.4 3.3 TRUE IntCal13 CalPal 4.2 NR 10.1017/S0033822200033865 2909 2679 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE511 PRJEB10885 ERS848977 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31568 AMS NR NR tooth 4224 36 -18.6 -99999 10.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2909 2679 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

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