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C14Rasmussen2015 #1346

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7 changes: 4 additions & 3 deletions CHANGELOG.md
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Expand Up @@ -12,14 +12,15 @@ and this project follows to [Calendar Versioning](https://calver.org/).
#### Ancient Metagenome: Host Associated

#### Ancient Single Genome: Host Associated
- Susat 2021 10.1016/j.celrep.2021.109278 (C14 added by @aidaanva)

- Susat 2021 10.1016/j.celrep.2021.109278 (C14 added by @aidaanva)
- C14 Austin 2022 10.1038/s42003-022-03890-z (added by @nihandilsad)
- Added and Fixed C14 info for Warinner2014 10.1038/ng.2906 (added by @biancamariabonucci)
- C14 Warinner2014 10.1038/ng.2906 (added by @biancamariabonucci)
- C14 Key2020 10.1038/s41559-020-1106-9 (added by @iseultj)
- C14 deBarrosDamgaard2018 10.1038/s41586-018-0094-2 (added by @marcel-keller)
- C14 Susat 2024 10.1038/s42003-024-06676-7 (added by @aidaanva)
- Added C14 Schuenemann2013 10.1126/science.1238286 (added by @jodie-lb)
- C14 Schuenemann2013 10.1126/science.1238286 (added by @jodie-lb)
- C14 Rasmussen 2015 10.1016/j.cell.2015.10.009 (added by @mlo89)


#### Ancient Metagenome: Environmental
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11 changes: 9 additions & 2 deletions ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv
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@@ -1,4 +1,5 @@
project_name publication_year data_publication_doi sample_name archive_project archive_sample_accession date_information_present date_is_radiocarbon archaeological_historical_date multiple_dates reference_location reference_citation_depth primary_secondary_reference_citation_doi direct_dating radiocarbon_lab_code radiocarbon_lab_sample_id spectrometry_type pretreatment_reported pretreatment_type sample_material uncalibrated_date uncalibrated_uncertainty_plus_minus delta_13c carbon_perc delta_15n carbon_nitrogen_ratio calibration_reported calibration_curve calibration_software calibration_software_version calibration_software_settings calibration_software_citation_doi calibrated_range_lower calibrated_range_upper calibrated_range_median calibrated_range_suffix calibrated_range_sigma reservoir_offset_mentioned reservoir_offset_applied reservoir_offset_type reservoir_offset_reported reservoir_offset_reported_sd reservoir_aquatic_carbon_perc reservoir_aquatic_carbon_perc_sd

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AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 1343UnTal85 PRJEB19335 ERS1892067 TRUE TRUE DNE FALSE main text 2 10.1371/journal.pone.0139705 TRUE MAMS 18949 AMS NR NR tooth 3819 24 -20.5 47.5 -99999 3.3 TRUE IntCal13 OxCal v4.2.24 default 10.1017/S0033822200033865 4346 4098 4203 cal BP 2 TRUE FALSE DNE NA NA NA NA
AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 6Post PRJEB19335 ERS1892066 TRUE TRUE DNE FALSE main text 2 10.1371/journal.pone.0139705 TRUE MAMS 18955 AMS NR NR tooth 3574 19 -20.7 49 -99999 3.3 TRUE IntCal13 OxCal v4.2.24 default 10.1017/S0033822200033865 3957 3832 3873 cal BP 2 TRUE FALSE DNE NA NA NA NA
Spyrou2018 2018 10.1038/s41467-018-04550-9 RT5 PRJEB24296 ERS2106903 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29430 AMS NR NR tooth 3517 27 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3868 3704 3789 cal BP 2 FALSE DNE DNE NA NA NA NA
Expand All @@ -22,8 +23,14 @@ Susat2024 2024 10.1038/s42003-024-06676-7 Warburg_2 PRJEB49648 ERS19529514 TRUE
Schuenemann2013 2013 10.1126/science.1238286 3077 PRJNA200950 SRS418834 TRUE TRUE 800 FALSE main text 1 10.1126/science.1238286 TRUE MAMS 16188 NR NR NR bone 938 19 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1032 1155 -99999 cal AD -99999 FALSE DNE DNE NA NA NA NA
Schuenemann2013 2013 10.1126/science.1238286 Jorgen_625 PRJNA200950 SRS418854 TRUE TRUE 700 FALSE main text 1 10.1126/science.1238286 TRUE MAMS 16091 NR NR NR tooth 644 23 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1293 1386 -99999 cal AD -99999 FALSE DNE DNE NA NA NA NA
Schuenemann2013 2013 10.1126/science.1238286 Refshale_16 PRJNA200950 SRS418859 TRUE TRUE 600 FALSE main text 1 10.1126/science.1238286 TRUE MAMS 16092 NR NR NR bone 909 24 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1046 1163 -99999 cal AD -99999 FALSE DNE DNE NA NA NA NA


Schuenemann2013 2013 10.1126/science.1238286 SK2 PRJNA200950 SRS418843 TRUE TRUE 800 FALSE main text 1 10.1126/science.1238286 TRUE MAMS 17404 NR NR NR bone 729 23 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1268 1283 -99999 cal AD -99999 FALSE DNE DNE NA NA NA NA
Schuenemann2013 2013 10.1126/science.1238286 SK8 PRJNA200950 SRS418845 TRUE TRUE 800 FALSE main text 2 10.1371/journal.pone.0062406 TRUE Wk 28629 NR NR NR bone 1023 80 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 1010 1160 -99999 cal AD 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE00 PRJEB10885 ERS848971 TRUE TRUE 4412 FALSE supplement table 1 10.1016/j.cell.2015.10.009 FALSE UBA 29064 AMS NR NR bone 3969 32 -21.3 -99999 8.9 3.14 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2575 2349 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

The genome was retrieve from a teeth but the dating was done with a bone from the same individual

Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE139 PRJEB10885 ERS848972 TRUE TRUE 3979 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE Ua 44034 AMS NR NR bone 3645 33 -99999 -99999 -99999 -99999 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2135 1923 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*1 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30991 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*1 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30991 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 NR OxA 30990 AMS NR NR tooth 3740 33 -20.9 -99999 14.1 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2277 2033 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999

Unsure whether the date is from the exact teeth where the genome was obtained

Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*2 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30992 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386*2 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 30992 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE386 PRJEB10885 ERS848973 TRUE TRUE 4113 TRUE supplement table 1 10.1016/j.cell.2015.10.009 NR OxA 30991 AMS NR NR tooth 3775 34 -21.3 -99999 14 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2298 2045 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999

Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE FRESHWATER NA -99999 -99999 -99999
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE397 PRJEB10885 ERS848974 TRUE TRUE 2901 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31002 AMS NR NR tooth 2807 31 -18.9 -99999 7.8 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1048 855 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

For this individual no reservoir effect was mentioned in the supplement

Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE505 PRJEB10885 ERS848975 TRUE TRUE 3636 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31216 AMS NR NR tooth 3391 27 -18.8 -99999 11.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 1746 1626 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE509 PRJEB10885 ERS848976 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31221 AMS NR NR tooth 4186 27 -18.8 -99999 11.4 3.2 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2887 2677 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE509 PRJEB10885 ERS848976 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31221 AMS NR NR tooth 4186 27 -18.8 -99999 11.4 3.2 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2887 2677 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE509 PRJEB10885 ERS848976 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31221 AMS NR NR tooth 4186 27 -18.8 -99999 11.4 3.2 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2887 2677 NA cal BC 2 TRUE FALSE DNE NA NA NA NA

Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE511 PRJEB10885 ERS848977 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31568 AMS NR NR tooth 4224 36 -18.6 -99999 10.4 3.3 TRUE IntCal13 CalPal 4.2 NR 10.1017/S0033822200033865 2909 2679 NA cal BC 2 FALSE DNE DNE NA NA NA NA
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Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE511 PRJEB10885 ERS848977 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31568 AMS NR NR tooth 4224 36 -18.6 -99999 10.4 3.3 TRUE IntCal13 CalPal 4.2 NR 10.1017/S0033822200033865 2909 2679 NA cal BC 2 FALSE DNE DNE NA NA NA NA
Rasmussen2015 2015 10.1016/j.cell.2015.10.009 RISE511 PRJEB10885 ERS848977 TRUE TRUE 4732-4744 FALSE supplement table 1 10.1016/j.cell.2015.10.009 TRUE OxA 31568 AMS NR NR tooth 4224 36 -18.6 -99999 10.4 3.3 TRUE IntCal13 OxCal 4.2 NR 10.1017/S0033822200033865 2909 2679 NA cal BC 2 TRUE FALSE DNE NA NA NA NA