From 2c1208febd9a6838c1cf1905858a91a97c3f786a Mon Sep 17 00:00:00 2001 From: KaHea-21 Date: Fri, 7 Feb 2025 10:23:11 +0000 Subject: [PATCH 1/6] C14 PattersonRoss2018 --- .../dates/ancientsinglegenome-hostassociated_dates.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv index fb2db67f4..03f5e5ca1 100644 --- a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv +++ b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv @@ -4,4 +4,4 @@ AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 6Post PRJEB19335 ERS1892066 Spyrou2018 2018 10.1038/s41467-018-04550-9 RT5 PRJEB24296 ERS2106903 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29430 AMS NR NR tooth 3517 27 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3868 3704 3789 cal BP 2 FALSE DNE DNE NA NA NA NA Spyrou2018 2018 10.1038/s41467-018-04550-9 RT6 PRJEB24296 ERS2106904 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29431 AMS NR NR tooth 3499 25 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3842 3696 -99999 cal BP 2 FALSE DNE DNE NA NA NA NA - +PattersonRoss2018 PattersonRoss2018 2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE . FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli NR NR . NR . . NR 1569 60 NR . . . . . NR NR NR NR . NR NR . NR . . . From a1d1bff44042703b30b379353db8b176b9a33870 Mon Sep 17 00:00:00 2001 From: KaHea-21 Date: Fri, 7 Feb 2025 10:23:44 +0000 Subject: [PATCH 2/6] C14 PattersonRoss2018 --- .../dates/ancientsinglegenome-hostassociated_dates.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv index 03f5e5ca1..8bede5431 100644 --- a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv +++ b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv @@ -4,4 +4,4 @@ AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 6Post PRJEB19335 ERS1892066 Spyrou2018 2018 10.1038/s41467-018-04550-9 RT5 PRJEB24296 ERS2106903 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29430 AMS NR NR tooth 3517 27 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3868 3704 3789 cal BP 2 FALSE DNE DNE NA NA NA NA Spyrou2018 2018 10.1038/s41467-018-04550-9 RT6 PRJEB24296 ERS2106904 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29431 AMS NR NR tooth 3499 25 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3842 3696 -99999 cal BP 2 FALSE DNE DNE NA NA NA NA -PattersonRoss2018 PattersonRoss2018 2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE . FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli NR NR . NR . . NR 1569 60 NR . . . . . NR NR NR NR . NR NR . NR . . . +PattersonRoss2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE . FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli NR NR . NR . . NR 1569 60 NR . . . . . NR NR NR NR . NR NR . NR . . . From 7138c17f010c99f2302229309e3249fdd8cacab4 Mon Sep 17 00:00:00 2001 From: KaHea-21 Date: Fri, 7 Feb 2025 10:25:48 +0000 Subject: [PATCH 3/6] C14 PattersonRoss2018 --- .../dates/ancientsinglegenome-hostassociated_dates.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv index 8bede5431..5b1e080ee 100644 --- a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv +++ b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv @@ -4,4 +4,4 @@ AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 6Post PRJEB19335 ERS1892066 Spyrou2018 2018 10.1038/s41467-018-04550-9 RT5 PRJEB24296 ERS2106903 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29430 AMS NR NR tooth 3517 27 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3868 3704 3789 cal BP 2 FALSE DNE DNE NA NA NA NA Spyrou2018 2018 10.1038/s41467-018-04550-9 RT6 PRJEB24296 ERS2106904 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29431 AMS NR NR tooth 3499 25 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3842 3696 -99999 cal BP 2 FALSE DNE DNE NA NA NA NA -PattersonRoss2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE . FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli NR NR . NR . . NR 1569 60 NR . . . . . NR NR NR NR . NR NR . NR . . . +PattersonRoss2018 2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE . FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli NR NR . NR . . NR 1569 60 NR . . . . . . . . . NR NR NR NR . NR NR . NR . . . From d1adcdbed4e0a2b0732869b5d0a5e9ac3b1b547f Mon Sep 17 00:00:00 2001 From: KaHea-21 Date: Thu, 13 Feb 2025 21:26:17 +0000 Subject: [PATCH 4/6] C14 PattersonRoss2018 --- .../dates/ancientsinglegenome-hostassociated_dates.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv index 5b1e080ee..785e37ebd 100644 --- a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv +++ b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv @@ -4,4 +4,4 @@ AndradesValtuena2017 2017 10.1016/j.cub.2017.10.025 6Post PRJEB19335 ERS1892066 Spyrou2018 2018 10.1038/s41467-018-04550-9 RT5 PRJEB24296 ERS2106903 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29430 AMS NR NR tooth 3517 27 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3868 3704 3789 cal BP 2 FALSE DNE DNE NA NA NA NA Spyrou2018 2018 10.1038/s41467-018-04550-9 RT6 PRJEB24296 ERS2106904 TRUE TRUE DNE FALSE supplement text 1 10.1038/s41467-018-04550-9 TRUE MAMS 29431 AMS NR NR tooth 3499 25 -99999 -99999 -99999 -99999 TRUE NR NR NR NR NR 3842 3696 -99999 cal BP 2 FALSE DNE DNE NA NA NA NA -PattersonRoss2018 2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE . FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli NR NR . NR . . NR 1569 60 NR . . . . . . . . . NR NR NR NR . NR NR . NR . . . +PattersonRoss2018 2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE DNE FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli TRUE NR NA NR NR NR unknown 1569 60 -99999 -99999 -99999 -99999 NR NR NR NR NR NR -99999 -99999 -99999 NR -99999 FALSE DNE DNE NA NA NA NA From 163781758beb973c3a5a32dbd425b4e4e1468c51 Mon Sep 17 00:00:00 2001 From: KaHea-21 Date: Thu, 13 Feb 2025 21:30:12 +0000 Subject: [PATCH 5/6] Update CHANGELOG.md --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 0ed3be34f..6bb396cbf 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,8 @@ and this project follows to [Calendar Versioning](https://calver.org/). #### Ancient Single Genome: Host Associated +- C14: PattersonRoss 2018 10.1371/journal.ppat.1006750 (added by @KaHea-21) + #### Ancient Metagenome: Environmental ### Changed From 4b5f4909d9b666209bec464a1d613104e2ad97b8 Mon Sep 17 00:00:00 2001 From: KaHea-21 Date: Thu, 13 Feb 2025 21:38:04 +0000 Subject: [PATCH 6/6] C14 PattersonRoss2018 --- .../dates/ancientsinglegenome-hostassociated_dates.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv index 33ea7887a..dd0e8fd1e 100644 --- a/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv +++ b/ancientsinglegenome-hostassociated/dates/ancientsinglegenome-hostassociated_dates.tsv @@ -19,4 +19,4 @@ Austin2022 2022 10.1038/s42003-022-03890-z St.LI PRJNA851947 SRS13524932 TRUE FA Susat2021 2021 10.1016/j.celrep.2021.109278 RV2039 PRJEB42185 ERS6638365 TRUE TRUE DNE FALSE main text 3 https://fu-berlin.primo.exlibrisgroup.com/permalink/49KOBV_FUB/1v1tp5h/alma9958233188402883 TRUE KIA 46462 AMS NR NR tooth 5049 33 -25.22 -99999 13.65 3.2 TRUE IntCal13 OxCal 4 NR 10.1111/j.1475-4754.2008.00457.x 5300 5050 NA cal BP 2 TRUE TRUE FRESHWATER 700 50 53 7 Susat2024 2024 10.1038/s42003-024-06676-7 Warburg_1 PRJEB49648 ERS19529513 TRUE TRUE DNE FALSE supplement text 1 10.1038/s42003-024-06676-7 TRUE KIA 55519 AMS NR NR tooth -99999 -99999 -99999 -99999 -99999 -99999 TRUE IntCal20 OxCal 4.4.4 NR 10.1111/j.1475-4754.2008.00457.x 5291 4979 -99999 cal BP 2 FALSE DNE DNE NA NA NA NA Susat2024 2024 10.1038/s42003-024-06676-7 Warburg_2 PRJEB49648 ERS19529514 TRUE TRUE DNE FALSE supplement text 1 10.1038/s42003-024-06676-7 TRUE KIA 56332 AMS NR NR tooth -99999 -99999 -99999 -99999 -99999 -99999 TRUE IntCal20 OxCal 4.4.4 NR 10.1111/j.1475-4754.2008.00457.x 5265 4857 -99999 cal BP 2 FALSE DNE DNE NA NA NA NA -PattersonRoss2018 2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE DNE FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli TRUE NR NA NR NR NR unknown 1569 60 -99999 -99999 -99999 -99999 NR NR NR NR NR NR -99999 -99999 -99999 NR -99999 FALSE DNE DNE NA NA NA NA +PattersonRoss2018 2018 10.1371/journal.ppat.1006750 NASD24 Unknown MG585269 TRUE TRUE DNE FALSE main text 2 https://www.researchgate.net/publication/285264300_Le_mummie_aragonesi_in_San_Domenico_Maggiore_di_DNEpoli TRUE NR NA NR NR NR unknown 1569 60 -99999 -99999 -99999 -99999 FALSE NR NR NR NR NR -99999 -99999 -99999 DNE -99999 FALSE DNE DNE NA NA NA NA