From 62dce7b4e4697aade0811855445a0b615535401d Mon Sep 17 00:00:00 2001 From: pswali <110822898+pswali@users.noreply.github.com> Date: Fri, 7 Feb 2025 10:45:46 +0000 Subject: [PATCH 1/5] LlanosLizcano2025 side note: the material was both tooth and femur but further information in the supplementary was not available. --- .../samples/ancientsinglegenome-hostassociated_samples.tsv | 1 + 1 file changed, 1 insertion(+) diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv index 2d68ef353..ab2a952c1 100644 --- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv +++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv @@ -734,3 +734,4 @@ Fiddaman2023 2023 10.1126/science.adg2238 Naderi Tepe 38.01 57.02 Iran OL2267 Ga Fiddaman2023 2023 10.1126/science.adg2238 Castillo de Montsoriu 41.783 2.540 Spain OL1999 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164995 Fiddaman2023 2023 10.1126/science.adg2238 Kazan City 55.791 49.121 Russia OL1584 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164996 Fiddaman2023 2023 10.1126/science.adg2238 Cheboksary City 56.152 47.246 Russia OL1585 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164997 +LlanosLizcano2025 2025 10.1038/s41598-024-85038-z Velia 40.158 15.159 Italy LV13 Homo sapiens 1800 10.1016/j.cub.2016.10.016 eukaryota Plasmodium falciparum tooth From 39470265f433395414ff1f35119e914a7647878e Mon Sep 17 00:00:00 2001 From: pswali <110822898+pswali@users.noreply.github.com> Date: Fri, 7 Feb 2025 12:00:29 +0000 Subject: [PATCH 2/5] update_table --- .../samples/ancientsinglegenome-hostassociated_samples.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv index ab2a952c1..1a4812305 100644 --- a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv +++ b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv @@ -734,4 +734,4 @@ Fiddaman2023 2023 10.1126/science.adg2238 Naderi Tepe 38.01 57.02 Iran OL2267 Ga Fiddaman2023 2023 10.1126/science.adg2238 Castillo de Montsoriu 41.783 2.540 Spain OL1999 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164995 Fiddaman2023 2023 10.1126/science.adg2238 Kazan City 55.791 49.121 Russia OL1584 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164996 Fiddaman2023 2023 10.1126/science.adg2238 Cheboksary City 56.152 47.246 Russia OL1585 Gallus gallus 400 10.1126/science.adg2238 virus Gallid alphaherpesvirus 2 bone chromosome SRA raw PRJEB64489 ERS16164997 -LlanosLizcano2025 2025 10.1038/s41598-024-85038-z Velia 40.158 15.159 Italy LV13 Homo sapiens 1800 10.1016/j.cub.2016.10.016 eukaryota Plasmodium falciparum tooth +LlanosLizcano2025 2025 10.1038/s41598-024-85038-z Velia 40.158 15.159 Italy LV13 Homo sapiens 1800 10.1016/j.cub.2016.10.016 eukaryota Plasmodium falciparum tooth organelle ENA raw PRJEB72667 ERS22854597 From 51ef87fa88d5cf5708f61cd53b0f0d23963b7b20 Mon Sep 17 00:00:00 2001 From: pswali <110822898+pswali@users.noreply.github.com> Date: Fri, 7 Feb 2025 12:23:58 +0000 Subject: [PATCH 3/5] Update ancientsinglegenome-hostassociated_libraries.tsv --- ...tsinglegenome-hostassociated_libraries.tsv | 72 +++++++++++++++++++ 1 file changed, 72 insertions(+) diff --git a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv index f9431421c..6091c42e6 100644 --- a/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv +++ b/ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv @@ -3159,3 +3159,75 @@ Fiddaman2023 2023 10.1126/science.adg2238 OL1584 SRA PRJEB64489 ERS16164996 OL15 Fiddaman2023 2023 10.1126/science.adg2238 OL1584 SRA PRJEB64489 ERS16164996 OL1584ii double AmpliTaq Gold DNA none Illumina NovaSeq 6000 SINGLE Targeted-Capture 23678785 ERR11752806 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR117/006/ERR11752806/ERR11752806.fastq.gz 048c5746773f3c55c700d50f2e3dbb18 1664874891 Fiddaman2023 2023 10.1126/science.adg2238 OL1585 SRA PRJEB64489 ERS16164997 OL1585 double AmpliTaq Gold DNA none Illumina NovaSeq 6000 SINGLE Targeted-Capture 20374738 ERR11752797 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR117/097/ERR11752797/ERR11752797.fastq.gz f984b19b9778e16891f45ab5bc7394e4 584538336 Fiddaman2023 2023 10.1126/science.adg2238 OL1585 SRA PRJEB64489 ERS16164997 OL1585 double AmpliTaq Gold DNA none Illumina HiSeq 2500 SINGLE Targeted-Capture 2994421 ERR11752832 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR117/032/ERR11752832/ERR11752832.fastq.gz 05838e7aa914b34d6e43e0585467c2fc 109193304 +LlanosLizcano2025 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 7_S7_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 18453785 ERR14194062 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/062/ERR14194062/ERR14194062.fastq.gz 81afce07e2c880137206f8b774447afb 718972267 +LlanosLizcano2026 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 7_S7_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 18453785 ERR14194063 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/063/ERR14194063/ERR14194063.fastq.gz 95bcd47cd4d0dc5c289d0fca580d35a0 737365760 +LlanosLizcano2027 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 8_S8_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 16409846 ERR14194064 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/064/ERR14194064/ERR14194064.fastq.gz be7ebc82771f2a049fde2633b392c861 457399156 +LlanosLizcano2028 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 8_S8_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 16409846 ERR14194065 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/065/ERR14194065/ERR14194065.fastq.gz 7c8348784affab01a1ac710901dc191c 458412305 +LlanosLizcano2029 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 11_S11_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 32671349 ERR14194068 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/068/ERR14194068/ERR14194068.fastq.gz a975f04a4cb967e0b75c62ce59e1ed65 1269198472 +LlanosLizcano2030 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 12_S12_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 45062270 ERR14194070 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/070/ERR14194070/ERR14194070.fastq.gz 65a25555edb4ad6e036f0804ab003f94 1647416725 +LlanosLizcano2031 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 12_S12_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 45062270 ERR14194071 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/071/ERR14194071/ERR14194071.fastq.gz 7d7f602c676bd7f2151524b06263c677 1703663269 +LlanosLizcano2032 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 13_S13_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 36721778 ERR14194072 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/072/ERR14194072/ERR14194072.fastq.gz dd42f16dd491d804c9f0cb1a718fa546 1359063464 +LlanosLizcano2033 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 14_S14_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 42540816 ERR14194074 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/074/ERR14194074/ERR14194074.fastq.gz 987da8a979e807f75ba10ec160d3bed8 1504469261 +LlanosLizcano2034 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 16_S16_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 45239179 ERR14194079 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/079/ERR14194079/ERR14194079.fastq.gz 8119fd6363cf668fa21b07bdbb7d776a 1679853981 +LlanosLizcano2035 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 18_S18_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 35407765 ERR14194082 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/082/ERR14194082/ERR14194082.fastq.gz ac3aea2e0698d7b5a2b9a5c142970b63 1257713444 +LlanosLizcano2036 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 18_S18_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 35407765 ERR14194083 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/083/ERR14194083/ERR14194083.fastq.gz 96d3b69fb6d6cdf073cfb7eee89c61d1 1282912743 +LlanosLizcano2037 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 19_S19_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 33912445 ERR14194085 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/085/ERR14194085/ERR14194085.fastq.gz 630b2a182dc6f884a3ef6ca521425ade 1128758924 +LlanosLizcano2038 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 21_S21_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 18761737 ERR14194088 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/088/ERR14194088/ERR14194088.fastq.gz 596b16ccf667686b14336eec0090016c 659541762 +LlanosLizcano2039 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 22_S22_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 56877803 ERR14194092 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/092/ERR14194092/ERR14194092.fastq.gz 5c16fd2127755b869c7634f822116b53 1965668302 +LlanosLizcano2040 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 24_S24_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 31395516 ERR14194096 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/096/ERR14194096/ERR14194096.fastq.gz 4a0561cd29ac172c87f3da786ea5d4bd 1159248655 +LlanosLizcano2041 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 24_S24_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 31395516 ERR14194097 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/097/ERR14194097/ERR14194097.fastq.gz e591c4d224e1d1614ee1212ebdb4e530 1189020606 +LlanosLizcano2042 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 25_S25_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 17029136 ERR14194098 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/098/ERR14194098/ERR14194098.fastq.gz 12ece80d71612b077c7ad5a70752175e 596241371 +LlanosLizcano2043 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 25_S25_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 17029136 ERR14194099 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/099/ERR14194099/ERR14194099.fastq.gz f7b88c2f254824b2967a99c01b4f5826 609397206 +LlanosLizcano2044 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 26_S26_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 24946837 ERR14194101 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/001/ERR14194101/ERR14194101.fastq.gz 172e802e0e824ac057ce30093dea5d56 858370387 +LlanosLizcano2045 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 28_S28_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 20308100 ERR14194104 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/004/ERR14194104/ERR14194104.fastq.gz 225189c258c00f281450b0e56524b25f 806275992 +LlanosLizcano2046 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 29_S29_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 12593540 ERR14194106 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/006/ERR14194106/ERR14194106.fastq.gz af4c7455d3bcbb1dc95f298b097021c3 454415314 +LlanosLizcano2047 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 30_S30_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 30789508 ERR14194109 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/009/ERR14194109/ERR14194109.fastq.gz 540b6a6686beb70dcd7a003623b8a903 1147172186 +LlanosLizcano2048 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 33_S33_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 34233939 ERR14195786 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/086/ERR14195786/ERR14195786.fastq.gz a2d7b46b90a149e23e16a3461bcd3243 1209818420 +LlanosLizcano2049 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 36_S36_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 61002654 ERR14199131 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/031/ERR14199131/ERR14199131.fastq.gz cfa08e0451468fc25fbea443afc4d92b 2107927550 +LlanosLizcano2050 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 10_S10_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 32935512 ERR14185229 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/029/ERR14185229/ERR14185229.fastq.gz cfa56f3ee7b52427460a75eb1dec90ba 1146210484 +LlanosLizcano2051 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 3_S3_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 22934134 ERR14194055 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/055/ERR14194055/ERR14194055.fastq.gz 2ce6d34f5093f37620609b70ac511865 872575041 +LlanosLizcano2052 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 4_S4_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 13388583 ERR14194057 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/057/ERR14194057/ERR14194057.fastq.gz f13d1a56467c1fdb586eb1f34ee2bfd3 543368351 +LlanosLizcano2053 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 5_S5_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 20313371 ERR14194059 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/059/ERR14194059/ERR14194059.fastq.gz 45138140ec3b953d1c11af3e3c5392ec 928552401 +LlanosLizcano2054 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 6_S6_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 12081602 ERR14194060 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/060/ERR14194060/ERR14194060.fastq.gz 6837fae3dd7eae5f1e16aad0a878bb70 505452114 +LlanosLizcano2055 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 6_S6_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 12081602 ERR14194061 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/061/ERR14194061/ERR14194061.fastq.gz b1064a3c1d47a42ebab17361f872877a 531873009 +LlanosLizcano2056 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 13_S13_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 36721778 ERR14194073 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/073/ERR14194073/ERR14194073.fastq.gz e79a3f65b38fb382e393c9d0b772f1c6 1414254057 +LlanosLizcano2057 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 14_S14_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 42540816 ERR14194075 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/075/ERR14194075/ERR14194075.fastq.gz 73441d18a84524d58dfa6bf6d71d04c9 1547116378 +LlanosLizcano2058 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 15_S15_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 49 ERR14194076 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/076/ERR14194076/ERR14194076.fastq.gz 1e2542dd35687bf0ec09da80d9682eb3 3135 +LlanosLizcano2059 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 16_S16_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 45239179 ERR14194078 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/078/ERR14194078/ERR14194078.fastq.gz 36eb85bf461a732436272a9b2f6e608c 1628155506 +LlanosLizcano2060 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 17_S17_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 31672958 ERR14194081 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/081/ERR14194081/ERR14194081.fastq.gz f81ce6475296102b9d85c02c312e765e 1151503379 +LlanosLizcano2061 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 20_S20_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 42891591 ERR14194087 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/087/ERR14194087/ERR14194087.fastq.gz 22377ba58af9258fb81a90f73b98ded9 1532093744 +LlanosLizcano2062 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 2_S2_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 11028209 ERR14194090 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/090/ERR14194090/ERR14194090.fastq.gz dd9fe570bfe2280aa12026bee2383dc2 484150297 +LlanosLizcano2063 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 3_S3_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 22934134 ERR14194091 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/091/ERR14194091/ERR14194091.fastq.gz 6d5d20980edf179c10ceb4bf03124c2e 836050168 +LlanosLizcano2064 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 22_S22_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 56877803 ERR14194093 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/093/ERR14194093/ERR14194093.fastq.gz 6eb9180ed0c3bca8d3ab9eb96ef5edee 2023464937 +LlanosLizcano2065 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 27_S27_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 25086848 ERR14194103 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/003/ERR14194103/ERR14194103.fastq.gz 7ebfab3dab6cdcdb82a8ba1b6014d62f 994424214 +LlanosLizcano2066 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 28_S28_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 20308100 ERR14194105 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/005/ERR14194105/ERR14194105.fastq.gz 2a2fbcc8fb697415540a2c4bd4aee588 829614466 +LlanosLizcano2067 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 32_S32_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 39221603 ERR14195785 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/085/ERR14195785/ERR14195785.fastq.gz 9c5e8c57e614964104a0c9d8454107d6 1251037015 +LlanosLizcano2068 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 33_S33_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 34233939 ERR14195787 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/087/ERR14195787/ERR14195787.fastq.gz 7d5424246ce80b7bcaac78a820c2986c 1256939883 +LlanosLizcano2069 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 34_S34_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 15035193 ERR14197457 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/057/ERR14197457/ERR14197457.fastq.gz a628302577f514367135711fbf8be14c 545369079 +LlanosLizcano2070 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 34_S34_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 15035193 ERR14197458 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/058/ERR14197458/ERR14197458.fastq.gz d9ac6d6bb594afd25c4eb4853c531cb0 577986438 +LlanosLizcano2071 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 35_S35_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 46578448 ERR14197460 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/060/ERR14197460/ERR14197460.fastq.gz b66611260801395c5f0ddae8a586befa 1511810365 +LlanosLizcano2072 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 36_S36_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 61002654 ERR14197899 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/099/ERR14197899/ERR14197899.fastq.gz 545143237e3a1742e7e1a2d7f5572fd0 2053907208 +LlanosLizcano2073 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 10_S10_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 32935512 ERR14185226 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/026/ERR14185226/ERR14185226.fastq.gz 68e43a715696374126dd498eee976c0d 1127761470 +LlanosLizcano2074 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 1_S1_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 23075487 ERR14194052 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/052/ERR14194052/ERR14194052.fastq.gz be9da6a7fc37d1c2c9d5fa91da888a8a 959969454 +LlanosLizcano2075 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 1_S1_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 23075487 ERR14194053 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/053/ERR14194053/ERR14194053.fastq.gz 041d560f39f65f09931ec00b046a13b7 1027334329 +LlanosLizcano2076 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 2_S2_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 11028209 ERR14194054 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/054/ERR14194054/ERR14194054.fastq.gz d9befc40167b1c306de642aa86024143 524829986 +LlanosLizcano2077 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 4_S4_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 13388583 ERR14194056 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/056/ERR14194056/ERR14194056.fastq.gz 4364ecdd7e908d04146f187fc4c3b645 519001117 +LlanosLizcano2078 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 5_S5_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 20313371 ERR14194058 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/058/ERR14194058/ERR14194058.fastq.gz ce0984be49a406728831ec08c580011b 886912079 +LlanosLizcano2079 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 9_S9_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 13808367 ERR14194066 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/066/ERR14194066/ERR14194066.fastq.gz 1187ad85209d8e5d50dadd52a9f834e9 512335590 +LlanosLizcano2080 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 9_S9_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 13808367 ERR14194067 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/067/ERR14194067/ERR14194067.fastq.gz a08041e13d18c7ec338dac1ca491c22f 535434069 +LlanosLizcano2081 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 11_S11_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 32671349 ERR14194069 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/069/ERR14194069/ERR14194069.fastq.gz 7bd56fbe7c2ecb37ab266568c7d8f898 1302404263 +LlanosLizcano2082 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 15_S15_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 49 ERR14194077 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/077/ERR14194077/ERR14194077.fastq.gz 4dcbbb06fe9ed801041d45ff1fe7c1c5 2582 +LlanosLizcano2083 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 17_S17_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 31672958 ERR14194080 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/080/ERR14194080/ERR14194080.fastq.gz 83b7c19725e944e588ff90af81afbb71 1129707073 +LlanosLizcano2084 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 19_S19_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 33912445 ERR14194084 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/084/ERR14194084/ERR14194084.fastq.gz 7705481568c742f4cef768ff4bd96cea 1108927573 +LlanosLizcano2085 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 20_S20_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 42891591 ERR14194086 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/086/ERR14194086/ERR14194086.fastq.gz 7e556874323095387d8e94645e3f6413 1491286583 +LlanosLizcano2086 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 21_S21_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 18761737 ERR14194089 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/089/ERR14194089/ERR14194089.fastq.gz 4fd643de64342ab90433eced8e59b635 671814893 +LlanosLizcano2087 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 23_S23_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 43850494 ERR14194094 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/094/ERR14194094/ERR14194094.fastq.gz 492cb4c03365d3d4a9535a24a7a4a560 1569160180 +LlanosLizcano2088 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 23_S23_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 43850494 ERR14194095 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/095/ERR14194095/ERR14194095.fastq.gz dcebbadec2a26ed10f5d3a777563bd8c 1606538719 +LlanosLizcano2089 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 26_S26_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 24946837 ERR14194100 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/000/ERR14194100/ERR14194100.fastq.gz bca3bc0ce257792542a88c2534918ef7 831407203 +LlanosLizcano2090 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 27_S27_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 25086848 ERR14194102 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/002/ERR14194102/ERR14194102.fastq.gz acbbd0770b7c820328811cb184d37694 952678133 +LlanosLizcano2091 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 29_S29_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 12593540 ERR14194107 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/007/ERR14194107/ERR14194107.fastq.gz 321311dd04c9409549b9e62a89878fdf 464056931 +LlanosLizcano2092 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 30_S30_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 30789508 ERR14194108 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/008/ERR14194108/ERR14194108.fastq.gz d7c9fc6f2b0391c6cbcbc9752b784e29 1122361998 +LlanosLizcano2093 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 31_S31_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 23651718 ERR14194110 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/010/ERR14194110/ERR14194110.fastq.gz 4c4665d4b627186a51b1b2148e78e707 714094588 +LlanosLizcano2094 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 31_S31_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 23651718 ERR14194111 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/011/ERR14194111/ERR14194111.fastq.gz f8dbb42b083fdfb4054d9596cf94309f 725506495 +LlanosLizcano2095 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 32_S32_1 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 39221603 ERR14195783 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/083/ERR14195783/ERR14195783.fastq.gz 893dbc9dcf5ce56a4af2263d075bb591 1228701276 +LlanosLizcano2096 2025 10.1038/s41598-024-85038-z Velia186 ENA PRJEB72667 ERS22854597 35_S35_2 single AmpliTaq Gold DNA none NextSeq 550 SINGLE Targeted-Capture 46578448 ERR14197461 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR141/061/ERR14197461/ERR14197461.fastq.gz 58ec923475f38938e87e19b20189ddc8 1541292721 From ac2081f122aa5b3bb9c031a8f2e39b1768663afd Mon Sep 17 00:00:00 2001 From: pswali <110822898+pswali@users.noreply.github.com> Date: Fri, 7 Feb 2025 12:41:09 +0000 Subject: [PATCH 4/5] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 0ed3be34f..ab3f3d8bb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,6 +12,7 @@ and this project follows to [Calendar Versioning](https://calver.org/). #### Ancient Metagenome: Host Associated #### Ancient Single Genome: Host Associated +- LlanosLizcano2025 10.1038/s41598-024-85038-z (added by @pswali and Toni) #### Ancient Metagenome: Environmental From bcd1b0f676ad69779e9efdd3892a238638a7f570 Mon Sep 17 00:00:00 2001 From: pswali <110822898+pswali@users.noreply.github.com> Date: Fri, 7 Feb 2025 12:53:22 +0000 Subject: [PATCH 5/5] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index ab3f3d8bb..d0f8189d0 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,7 +12,7 @@ and this project follows to [Calendar Versioning](https://calver.org/). #### Ancient Metagenome: Host Associated #### Ancient Single Genome: Host Associated -- LlanosLizcano2025 10.1038/s41598-024-85038-z (added by @pswali and Toni) +- LlanosLizcano2025 10.1038/s41598-024-85038-z (added by @pswali and @tonidedios94) #### Ancient Metagenome: Environmental