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Fleskes2024 #1389

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a41ec26
add Fleskes2024
rozwalak Feb 7, 2025
164d8e1
Change to previous format
rozwalak Feb 7, 2025
dca639c
back to table from master
rozwalak Feb 7, 2025
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Fleskes2024
anastbr Feb 7, 2025
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Fleskes 2024
anastbr Feb 7, 2025
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Fleskes 2024
anastbr Feb 7, 2025
32914e9
Fleskes 2024 libraries
anastbr Feb 7, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -10,6 +10,7 @@ and this project follows to [Calendar Versioning](https://calver.org/).
### Added

#### Ancient Metagenome: Host Associated
Fleskes 2024 10.1038/s42003-024-06893-0 (added by @anastbr and @rozwalak)

#### Ancient Single Genome: Host Associated

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12 changes: 12 additions & 0 deletions ancientmetagenome-hostassociated/libraries/ancientmetagenome-hostassociated_libraries.tsv
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Expand Up @@ -2669,3 +2669,15 @@ Bozzi2024 2024 10.1038/s41598-023-40246-x V11_T ENA PRJEB18722 ERS1485720 V11_T
Bozzi2024 2024 10.1038/s41598-023-40246-x V3_P ENA PRJEB18722 ERS1485725 V3_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777556 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/006/ERR1777556/ERR1777556.fastq.gz 262b72279b0e4778786907e8b23a80c9 174539467
Bozzi2024 2024 10.1038/s41598-023-40246-x V5_T ENA PRJEB18722 ERS1485730 V5_T double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777561 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/001/ERR1777561/ERR1777561.fastq.gz 42c22f3b88feeaf5d84c8e493783c245 156582293
Bozzi2024 2024 10.1038/s41598-023-40246-x V9_P ENA PRJEB18722 ERS1485737 V9_P double Phusion Hot Start High-Fidelity DNA none NA Illumina HiSeq 2500 SINGLE WGS 4000000 ERR1777568 ftp.sra.ebi.ac.uk/vol1/fastq/ERR177/008/ERR1777568/ERR1777568.fastq.gz 10396cb2aad632e275194c2f9cccd636 174445223
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_01 SRA PRJNA1037120 SRS19454881 CHS01 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 17931448 SRR30066272 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/072/SRR30066272/SRR30066272_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/072/SRR30066272/SRR30066272_2.fastq.gz eb0af045a7d6bf9d31840855ea377a5d;5052a00a8726cb358a2ffe61cba06fe0 1157598492;1326867362
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_03 SRA PRJNA1037120 SRS19454882 CHS03 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 37632769 SRR30066271 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/071/SRR30066271/SRR30066271_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/071/SRR30066271/SRR30066271_2.fastq.gz acebcba52908c638acfed21f1ea497ae;051709ad87969382c01c23d3f09dc643 2413486610;2730171270
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_13 SRA PRJNA1037120 SRS19454888 CHS13 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 17050799 SRR30066265 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/065/SRR30066265/SRR30066265_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/065/SRR30066265/SRR30066265_2.fastq.gz a82deb327eb3b4b7f2f4bc12880efd8a;86fabe787f102f7776769b1bdeefaeaa 1127693144;1279351749
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_14 SRA PRJNA1037120 SRS19454889 CHS14 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 22191803 SRR30066264 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/064/SRR30066264/SRR30066264_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/064/SRR30066264/SRR30066264_2.fastq.gz 9bebd899678f745b4d89cc0d7bba33af;31b2c4ba79906da693e1156bf82f7b06 1442719744;1651382902
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_20 SRA PRJNA1037120 SRS19454890 CHS20 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 30012567 SRR30066263 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/063/SRR30066263/SRR30066263_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/063/SRR30066263/SRR30066263_2.fastq.gz 940f09eb59d7792d5ef5a0e558d03e7b;5aa1dc050c20d7abdaf548fd64de9a18 1981586399;2288055492
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_21 SRA PRJNA1037120 SRS19454891 CHS21 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 25975360 SRR30066262 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/062/SRR30066262/SRR30066262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/062/SRR30066262/SRR30066262_2.fastq.gz 0c83c4dc9220394fb4b7608a68673986;e559b3c0b144b3ea6147e28bf1c800e8 1638853959;1845955012
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_22 SRA PRJNA1037120 SRS19454892 CHS22 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 33039409 SRR30066261 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/061/SRR30066261/SRR30066261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/061/SRR30066261/SRR30066261_2.fastq.gz b6deb74303259d9ef88c8341de53b44b;483c6c75dace4ec759822b04cb07fb15 2197208837;2562045346
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_26 SRA PRJNA1037120 SRS19454893 CHS26 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 51502714 SRR30066260 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/060/SRR30066260/SRR30066260_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/060/SRR30066260/SRR30066260_2.fastq.gz a78f1cd1018c145595b65416e9f25e6e;b1765526ac77c590c6177a854ef29a7f 3316836877;3773199953
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_27 SRA PRJNA1037120 SRS19454894 CHS27 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 44928841 SRR30066259 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/059/SRR30066259/SRR30066259_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/059/SRR30066259/SRR30066259_2.fastq.gz 878f72952205ead7812a2db8bc4d7959;c44cc5063eb0e4f6f400a9cae543f54f 2810726548;3179715618
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_29 SRA PRJNA1037120 SRS19454895 CHS29 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 39264905 SRR30066258 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/058/SRR30066258/SRR30066258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/058/SRR30066258/SRR30066258_2.fastq.gz 9ed230663c90ad8b17ffc8d3be83feef;565161b03ec3b26d505ed25eaf9a9465 2526317044;2919632988
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_31 SRA PRJNA1037120 SRS19454883 CHS31 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 19538702 SRR30066270 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/070/SRR30066270/SRR30066270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/070/SRR30066270/SRR30066270_2.fastq.gz d2704a785f297f194c33df7991149209;491a3bc69f9ef64ed27428b3e894be71 1263953562;1418338384
Fleskes2024 2024 10.1038/s42003-024-06893-0 CHS_36 SRA PRJNA1037120 SRS19454884 CHS36 double AmpliTaq Gold DNA half-udg NA HiSeq X Ten PAIRED WGS 48990186 SRR30066269 ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/069/SRR30066269/SRR30066269_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR300/069/SRR30066269/SRR30066269_2.fastq.gz bf450cf0a19f77e958b47f1a6a4f55d8;40ab7d70203587dc72235637b915f16b 3140705666;3603745115
12 changes: 12 additions & 0 deletions ancientmetagenome-hostassociated/samples/ancientmetagenome-hostassociated_samples.tsv
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Expand Up @@ -1539,3 +1539,15 @@ Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V11_T Hom
Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V3_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485725
Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V5_T Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue tooth ENA PRJEB18722 ERS1485730
Bozzi2024 2024 10.1038/s41598-023-40246-x Unknown NA NA United Kingdom V9_P Homo sapiens 1000 10.1371/journal.pone.0170940 skeletal tissue bone ENA PRJEB18722 ERS1485737
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS01 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454881
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS03 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454882
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS13 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454888
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS14 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454889
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS20 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454890
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS21 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454891
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS22 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454892
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS26 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454893
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS27 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454894
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS29 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454895
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS31 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454883
Fleskes2024 2024 10.1038/s42003-024-06893-0 The Anson Street African Burial Ground 32.786 -79.931 USA CHS36 Homo sapiens 200 10.1038/s42003-024-06893-0 oral dental calculus SRA PRJNA1037120 SRS19454884