build based on 8521e0e

Author: Documenter.jl

dev/Testing/test/index.html

@@ -177,4 +177,4 @@
   [14a3606d] MozillaCACerts_jll
   [83775a58] Zlib_jll
   [8e850ede] nghttp2_jll
-  [3f19e933] p7zip_jll</code></pre></article><nav class="docs-footer"><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Saturday 10 December 2022 18:20">Saturday 10 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+  [3f19e933] p7zip_jll</code></pre></article><nav class="docs-footer"><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Sunday 11 December 2022 02:01">Sunday 11 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/exercises/01-workshop_exercises/index.html

@@ -124,4 +124,4 @@
 tspan = (0.0,10.0)
 p = [1.5,1.0,3.0,1.0,0.1,0.1]
 prob = SDEProblem(lotka_volterra,lv_noise,u0,tspan,p)
-sol = [Array(solve(prob,SOSRI())(0.0:1.0:10.0)) for i in 1:20] # 20 solution samples</code></pre><p>Train a neural stochastic differential equation <span>$dX = f(X)dt + g(X)dW_t$</span> where both the drift (<span>$f$</span>) and the diffusion (<span>$g$</span>) functions are neural networks. See if constraining <span>$g$</span> can make the problem easier to fit.</p><h2 id="Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)"><a class="docs-heading-anchor" href="#Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)">Part 5: Optimizing the training behavior with minibatching (E)</a><a id="Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)-1"></a><a class="docs-heading-anchor-permalink" href="#Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)" title="Permalink"></a></h2><p>Use minibatching on the data to improve the training procedure. An example <a href="https://github.com/FluxML/model-zoo/pull/88">can be found at this PR</a>.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../">« SciMLTutorials.jl: Tutorials for Scientific Machine Learning (SciML) and Equation Solvers</a><a class="docs-footer-nextpage" href="../02-workshop_solutions/">SciML Workshop Exercise Solutions »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Saturday 10 December 2022 18:20">Saturday 10 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+sol = [Array(solve(prob,SOSRI())(0.0:1.0:10.0)) for i in 1:20] # 20 solution samples</code></pre><p>Train a neural stochastic differential equation <span>$dX = f(X)dt + g(X)dW_t$</span> where both the drift (<span>$f$</span>) and the diffusion (<span>$g$</span>) functions are neural networks. See if constraining <span>$g$</span> can make the problem easier to fit.</p><h2 id="Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)"><a class="docs-heading-anchor" href="#Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)">Part 5: Optimizing the training behavior with minibatching (E)</a><a id="Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)-1"></a><a class="docs-heading-anchor-permalink" href="#Part-5:-Optimizing-the-training-behavior-with-minibatching-(E)" title="Permalink"></a></h2><p>Use minibatching on the data to improve the training procedure. An example <a href="https://github.com/FluxML/model-zoo/pull/88">can be found at this PR</a>.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../../">« SciMLTutorials.jl: Tutorials for Scientific Machine Learning (SciML) and Equation Solvers</a><a class="docs-footer-nextpage" href="../02-workshop_solutions/">SciML Workshop Exercise Solutions »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Sunday 11 December 2022 02:01">Sunday 11 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/exercises/02-workshop_solutions/index.html

@@ -1161,4 +1161,4 @@
 [91a5bcdd-55d7-5caf-9e0b-520d859cae80] Plots 1.5.6
 [47a9eef4-7e08-11e9-0b38-333d64bd3804] SparseDiffTools 1.9.1
 [684fba80-ace3-11e9-3d08-3bc7ed6f96df] SparsityDetection 0.3.3
-[c3572dad-4567-51f8-b174-8c6c989267f4] Sundials 4.2.5</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../01-workshop_exercises/">« SciML Workshop Exercises</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Saturday 10 December 2022 18:20">Saturday 10 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+[c3572dad-4567-51f8-b174-8c6c989267f4] Sundials 4.2.5</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../01-workshop_exercises/">« SciML Workshop Exercises</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Sunday 11 December 2022 02:01">Sunday 11 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/index.html

@@ -7,4 +7,4 @@
 Pkg.activate(joinpath(pkgdir(SciMLTutorials),"tutorials","models"))
 Pkg.instantiate()</code></pre><p>will add all of the packages required to run any tutorial in the <code>models</code> folder.</p><h2 id="Contributing"><a class="docs-heading-anchor" href="#Contributing">Contributing</a><a id="Contributing-1"></a><a class="docs-heading-anchor-permalink" href="#Contributing" title="Permalink"></a></h2><p>All of the files are generated from the Weave.jl files in the <code>tutorials</code> folder. The generation process runs automatically, and thus one does not necessarily need to test the Weave process locally. Instead, simply open a PR that adds/updates a file in the &quot;tutorials&quot; folder and the PR will generate the tutorial on demand. Its artifacts can then be inspected in the Buildkite as described below before merging. Note that it will use the Project.toml and Manifest.toml of the subfolder, so any changes to dependencies requires that those are updated.</p><h3 id="Reporting-Bugs-and-Issues"><a class="docs-heading-anchor" href="#Reporting-Bugs-and-Issues">Reporting Bugs and Issues</a><a id="Reporting-Bugs-and-Issues-1"></a><a class="docs-heading-anchor-permalink" href="#Reporting-Bugs-and-Issues" title="Permalink"></a></h3><p>Report any bugs or issues at <a href="https://github.com/SciML/SciMLTutorials.jl/issues">the SciMLTutorials repository</a>.</p><h3 id="Inspecting-Tutorial-Results"><a class="docs-heading-anchor" href="#Inspecting-Tutorial-Results">Inspecting Tutorial Results</a><a id="Inspecting-Tutorial-Results-1"></a><a class="docs-heading-anchor-permalink" href="#Inspecting-Tutorial-Results" title="Permalink"></a></h3><p>To see tutorial results before merging, click into the BuildKite, click onto Artifacts, and then investigate the trained results.</p><p><img src="https://user-images.githubusercontent.com/1814174/118359358-02ddc980-b551-11eb-8a9b-24de947cefee.PNG" alt/></p><h3 id="Manually-Generating-Files"><a class="docs-heading-anchor" href="#Manually-Generating-Files">Manually Generating Files</a><a id="Manually-Generating-Files-1"></a><a class="docs-heading-anchor-permalink" href="#Manually-Generating-Files" title="Permalink"></a></h3><p>To run the generation process, do for example:</p><pre><code class="language-julia hljs">]activate SciMLTutorials # Get all of the packages
 using SciMLTutorials
-SciMLTutorials.weave_file(joinpath(pkgdir(SciMLTutorials),&quot;tutorials&quot;,&quot;models&quot;),&quot;01-classical_physics.jmd&quot;)</code></pre><p>To generate all of the files in a folder, for example, run:</p><pre><code class="language-julia hljs">SciMLTutorials.weave_folder(joinpath(pkgdir(SciMLTutorials),&quot;tutorials&quot;,&quot;models&quot;))</code></pre><p>To generate all of the notebooks, do:</p><pre><code class="language-julia hljs">SciMLTutorials.weave_all()</code></pre><p>Each of the tuturials displays the computer characteristics at the bottom of the benchmark.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="exercises/01-workshop_exercises/">SciML Workshop Exercises »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Saturday 10 December 2022 18:20">Saturday 10 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+SciMLTutorials.weave_file(joinpath(pkgdir(SciMLTutorials),&quot;tutorials&quot;,&quot;models&quot;),&quot;01-classical_physics.jmd&quot;)</code></pre><p>To generate all of the files in a folder, for example, run:</p><pre><code class="language-julia hljs">SciMLTutorials.weave_folder(joinpath(pkgdir(SciMLTutorials),&quot;tutorials&quot;,&quot;models&quot;))</code></pre><p>To generate all of the notebooks, do:</p><pre><code class="language-julia hljs">SciMLTutorials.weave_all()</code></pre><p>Each of the tuturials displays the computer characteristics at the bottom of the benchmark.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="exercises/01-workshop_exercises/">SciML Workshop Exercises »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 0.27.23 on <span class="colophon-date" title="Sunday 11 December 2022 02:01">Sunday 11 December 2022</span>. Using Julia version 1.8.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>