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I am using the genbank file from here and blast it against the Bigg1 version of Hpylori (just for testing purposes).
I built the metaproteome and then click BLAST. I then get the expected output in the terminal:
2
4278 sequences in file IN
335 sequences in file DB
Trying to run BLAST now - this may take several hours ... or days in worst case!
Formatting BLAST databases
Building a new DB, current time: 05/09/2021 13:45:56
New DB name: /stuff/cbmpy-metadraft/data_blast/1620560756/IN
New DB title: IN
Sequence type: Protein
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 4278 sequences in 0.0583789 seconds.
Building a new DB, current time: 05/09/2021 13:45:56
New DB name: /stuff/cbmpy-metadraft/data_blast/1620560756/DB
New DB title: DB
Sequence type: Protein
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 335 sequences in 0.0046699 seconds.
Done formatting
Starting BLAST searches...
Starting first BLAST pass for IN - IN on 05/09/2021Warning: [blastp] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output
Starting second BLAST pass for IN - IN on 05/09/2021
Building a new DB, current time: 05/09/2021 13:47:10
New DB name: /stuff/cbmpy-metadraft/data_blast/1620560756/tmpd
New DB title: ./tmpd
Sequence type: Protein
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 4 sequences in 0.000277996 seconds.
Warning: [blastp] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output
Building a new DB, current time: 05/09/2021 13:47:10
New DB name: /stuff/cbmpy-metadraft/data_blast/1620560756/tmpd
New DB title: ./tmpd
Sequence type: Protein
Deleted existing Protein BLAST database named /stuff/cbmpy-metadraft/data_blast/1620560756/tmpd
Keep MBits: T
Maximum file size: 1000000000B
Adding sequences from FASTA; added 5 sequences in 0.000389099 seconds.
Warning: [blastp] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output
I get a lot of the messages as shown here starting from the second Blast; is there a way to not show these but only the "important" ones like "Starting second BLAST pass for IN - IN on 05/09/2021" and then - once finished
Output saved to file Output.IN-DB
HTML output saved to orthologs.IN-DB.html
Table output saved to table.IN-DB
mysql output saved to sqltable.IN-DB
The messages inbetween make it hard to follow in which round of blasting metadraft is currently.
Thanks!
The text was updated successfully, but these errors were encountered:
I am using the genbank file from here and blast it against the Bigg1 version of Hpylori (just for testing purposes).
I built the metaproteome and then click BLAST. I then get the expected output in the terminal:
I get a lot of the messages as shown here starting from the second Blast; is there a way to not show these but only the "important" ones like "Starting second BLAST pass for IN - IN on 05/09/2021" and then - once finished
The messages inbetween make it hard to follow in which round of blasting metadraft is currently.
Thanks!
The text was updated successfully, but these errors were encountered: