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environment.yml
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name: conda_env
channels:
- anaconda
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- argcomplete=2.0.0=pyhd8ed1ab_0
- argh=0.26.2=pyh9f0ad1d_1002
- bbmap=39.00=h5c4e2a8_0
- bcftools=1.9=h68d8f2e_9
- biopython=1.73=py37h14c3975_0
- blast=2.13.0=hf3cf87c_0
- bowtie=1.2.3=py37h9a982cc_2
- bowtie2=2.3.4.3=py37he860b03_1
- bx-python=0.8.2=py37hebb334c_2
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- curl=7.85.0=h7bff187_0
- entrez-direct=16.2=he881be0_1
- expat=2.4.9=h27087fc_0
- fastqc=0.11.9=hdfd78af_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.14.0=hc2a2eb6_1
- freetype=2.12.1=hca18f0e_0
- gettext=0.19.8.1=h27087fc_1009
- gffutils=0.10.1=pyh864c0ab_1
- gmap=2021.08.25=pl5321h67092d7_2
- gsl=2.5=h294904e_1
- htslib=1.9=h4da6232_3
- importlib-metadata=4.11.4=py37h89c1867_0
- importlib_metadata=4.11.4=hd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.85.0=h7bff187_0
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=h46ee950_2
- libev=4.33=h516909a_1
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libgomp=12.1.0=h8d9b700_16
- libidn2=2.3.3=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.38=h753d276_0
- libsqlite=3.39.4=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.1.0=ha89aaad_16
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libzlib=1.2.12=h166bdaf_4
- lzo=2.10=h516909a_1000
- mapsplice=2.2.1=py37h07887db_0
- ncurses=6.1=hf484d3e_1002
- numpy=1.21.6=py37h976b520_0
- openjdk=11.0.1=h516909a_1016
- openssl=1.1.1q=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=0.24.0=py37hf484d3e_0
- pbzip2=1.1.13=0
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=2_h7f98852_perl5
- perl-apache-test=1.43=pl5321hdfd78af_0
- perl-app-cpanminus=1.7046=pl5321hd8ed1ab_0
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-base=2.23=pl5321hdfd78af_2
- perl-business-isbn=3.007=pl5321hdfd78af_0
- perl-business-isbn-data=20210112.006=pl5321hdfd78af_0
- perl-carp=1.50=pl5321hd8ed1ab_0
- perl-class-load=0.25=pl5321hdfd78af_1
- perl-class-load-xs=0.10=pl5321h9f5acd7_6
- perl-class-method-modifiers=2.13=pl5321hdfd78af_0
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
- perl-compress-raw-zlib=2.202=pl5321h166bdaf_0
- perl-constant=1.33=pl5321hdfd78af_2
- perl-data-dumper=2.183=pl5321hec16e2b_1
- perl-data-optlist=0.112=pl5321hdfd78af_0
- perl-db-file=1.855=pl5321h779adbc_1
- perl-devel-globaldestruction=0.14=pl5321hdfd78af_1
- perl-devel-overloadinfo=0.007=pl5321hdfd78af_0
- perl-devel-stacktrace=2.04=pl5321hdfd78af_1
- perl-dist-checkconflicts=0.11=pl5321hdfd78af_3
- perl-encode=3.19=pl5321hec16e2b_1
- perl-eval-closure=0.14=pl5321h9f5acd7_6
- perl-exporter=5.74=pl5321hd8ed1ab_0
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- perl-getopt-long=2.52=pl5321hdfd78af_0
- perl-io-compress=2.201=pl5321h87f3376_0
- perl-io-gzip=0.20=pl5321h7132678_4
- perl-io-zlib=1.11=pl5321hdfd78af_0
- perl-json=4.09=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h9f5acd7_5
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321hec16e2b_1
- perl-mime-base64=3.16=pl5321hec16e2b_2
- perl-module-implementation=0.09=pl5321hdfd78af_3
- perl-module-runtime=0.016=pl5321hdfd78af_2
- perl-module-runtime-conflicts=0.003=pl5321hdfd78af_1
- perl-moo=2.005004=pl5321hdfd78af_0
- perl-moose=2.2201=pl5321hec16e2b_2
- perl-mro-compat=0.15=pl5321hdfd78af_0
- perl-package-deprecationmanager=0.17=pl5321hdfd78af_1
- perl-package-stash=0.40=pl5321h87f3376_1
- perl-package-stash-xs=0.29=pl5321h87f3376_1
- perl-parallel-forkmanager=2.02=pl5321hdfd78af_1
- perl-params-util=1.102=pl5321h9f5acd7_1
- perl-parent=0.238=pl5321hd8ed1ab_0
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-role-tiny=2.002004=pl5321hdfd78af_0
- perl-scalar-list-utils=1.63=pl5321h166bdaf_0
- perl-set-intervaltree=0.12=pl5321h87f3376_2
- perl-storable=3.15=pl5321hec16e2b_3
- perl-sub-exporter=0.988=pl5321hdfd78af_0
- perl-sub-exporter-progressive=0.001013=pl5321hdfd78af_1
- perl-sub-identify=0.14=pl5321hec16e2b_2
- perl-sub-install=0.928=pl5321hdfd78af_3
- perl-sub-name=0.21=pl5321hec16e2b_3
- perl-sub-quote=2.006006=pl5321hdfd78af_0
- perl-try-tiny=0.31=pl5321hdfd78af_1
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- perl-uri=5.12=pl5321hdfd78af_0
- perl-xsloader=0.24=pl5321hd8ed1ab_0
- pip=22.2.2=pyhd8ed1ab_0
- pyfaidx=0.7.1=pyh5e36f6f_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pysam=0.15.2=py37h633085e_10
- python=3.7.8=h6f2ec95_1_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-lzo=1.12=py37he0a3664_1004
- python-xxhash=1.4.3=py37h8f50634_1
- python_abi=3.7=2_cp37m
- pytz=2022.4=pyhd8ed1ab_0
- pyvcf3=1.0.3=pyhdfd78af_0
- readline=8.0=h46ee950_1
- samtools=1.9=h10a08f8_12
- setuptools=59.8.0=py37h89c1867_1
- simplejson=3.17.6=py37h540881e_1
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.32.3=hcee41ef_1
- star=2.6.1b=0
- star-fusion=1.5.0=0
- tbb=2020.2=h4bd325d_4
- tk=8.6.12=h27826a3_0
- typing_extensions=4.4.0=pyha770c72_0
- wget=1.20.3=ha56f1ee_1
- wheel=0.37.1=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zipp=3.9.0=pyhd8ed1ab_0
- zlib=1.2.12=h166bdaf_4
prefix: conda_env/