You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
when I use seq2HLA, some errors occurred as follow:
First iteration starts....
Mapping ......
reads processed: 102029138
reads with at least one reported alignment: 0 (0.00%)
reads that failed to align: 102029138 (100.00%)
No alignments
Calculation of first digital haplotype.....
The digital haplotype is written into test-ClassI-nonclass.digitalhaplotype1
1st iteration done.
Now removing reads that mapped to the three top-scoring groups .......
Nothing to remove
Second iterations starts .....
Mapping ......
Error: reads file does not look like a FASTQ file
I have no idea why my fastq file of RNA-seq cannot be used. Any recommendations to solve my problems?
The text was updated successfully, but these errors were encountered:
when I use seq2HLA, some errors occurred as follow:
First iteration starts....
Mapping ......
reads processed: 102029138
reads with at least one reported alignment: 0 (0.00%)
reads that failed to align: 102029138 (100.00%)
No alignments
Calculation of first digital haplotype.....
The digital haplotype is written into test-ClassI-nonclass.digitalhaplotype1
1st iteration done.
Now removing reads that mapped to the three top-scoring groups .......
Nothing to remove
Second iterations starts .....
Mapping ......
Error: reads file does not look like a FASTQ file
I have no idea why my fastq file of RNA-seq cannot be used. Any recommendations to solve my problems?
The text was updated successfully, but these errors were encountered: