Merge pull request #2 from TRON-Bioinformatics/resource-params

Parameterize cpus and memory options
TRON-Bioinformatics · Feb 4, 2025 · d032afe · d032afe
2 parents 47acd20 + 2cc71ce
commit d032afe
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/modules/merge_replicates.nf b/modules/merge_replicates.nf
@@ -2,8 +2,8 @@
 
 process MERGE_REPLICATES {
     tag "$name"
-    cpus 1
-    memory '4g'
+    cpus "${params.cpus}"
+    memory "${params.memory}"
 
     conda (params.enable_conda ? 'conda-forge::libgcc-ng=10.3.0 conda-forge::gsl=2.7 bioconda::samtools=1.15.1' : null)
 
@@ -37,4 +37,4 @@ process MERGE_REPLICATES {
     ${normal_merge_cmd}
     samtools index ${name}.normal.bam
     """
-}
+}
diff --git a/modules/strelka2.nf b/modules/strelka2.nf
@@ -32,8 +32,8 @@ process STRELKA2 {
 }
 
 process CONCAT_FILES {
-    cpus 1
-    memory '4g'
+    cpus "${params.cpus}"
+    memory "${params.memory}"
     publishDir "${params.output}/${name}", mode: 'copy'
     tag "${name}"
 

diff --git a/nextflow.config b/nextflow.config
@@ -34,7 +34,7 @@ process.shell = ['/bin/bash', '-euo', 'pipefail']
 
 cleanup = true
 
-VERSION = '0.2.2'
+VERSION = '0.2.3'
 DOI = 'doi'
 
 manifest {