diff --git a/modules/merge_replicates.nf b/modules/merge_replicates.nf index 490c00b..ec6b4b9 100644 --- a/modules/merge_replicates.nf +++ b/modules/merge_replicates.nf @@ -2,8 +2,8 @@ process MERGE_REPLICATES { tag "$name" - cpus 1 - memory '4g' + cpus "${params.cpus}" + memory "${params.memory}" conda (params.enable_conda ? 'conda-forge::libgcc-ng=10.3.0 conda-forge::gsl=2.7 bioconda::samtools=1.15.1' : null) @@ -37,4 +37,4 @@ process MERGE_REPLICATES { ${normal_merge_cmd} samtools index ${name}.normal.bam """ -} \ No newline at end of file +} diff --git a/modules/strelka2.nf b/modules/strelka2.nf index 2ea17b6..49a566c 100644 --- a/modules/strelka2.nf +++ b/modules/strelka2.nf @@ -32,8 +32,8 @@ process STRELKA2 { } process CONCAT_FILES { - cpus 1 - memory '4g' + cpus "${params.cpus}" + memory "${params.memory}" publishDir "${params.output}/${name}", mode: 'copy' tag "${name}" diff --git a/nextflow.config b/nextflow.config index ecd56c5..f20276c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -34,7 +34,7 @@ process.shell = ['/bin/bash', '-euo', 'pipefail'] cleanup = true -VERSION = '0.2.2' +VERSION = '0.2.3' DOI = 'doi' manifest {