visual.conf

[labels]

AcquisitionMethod | AcquisitionMethod | AcqMet
Age | Age | Age
AlkylationReagent | AlkylationReagent | AlkylReag
AnatomicSiteTumor | AnatomicSiteTumor | AnatTum
AncestryCategory | AncestryCategory | AncestCat
AssayName | AssayName | Assay
Bait | Bait | Bait
BMI | BMI | BMI
BiologicalReplicate | BiologicalReplicate | BioRep
CellLine | CellLine | CellLine
CellPart | CellPart | CellPart
CellType | CellType | CellType
CleavageAgent | CleavageAgent | Cleavage
CollisionEnergy | CollisionEnergy | CollisionEnergy
Compound | Compound | Compound
ConcentrationOfCompound | ConcentrationOfCompound | ConcCompd
Chromatography | Chromatography | Chromatography
Depletion | Depletion | Depletion
DevelopmentalStage | DevelopmentalStage | DevStage
Disease | Disease | Disease
EnrichmentMethod | EnrichmentMethod | EnrichmentMethod
Experiment | Experiment | Exp
FactorValue | FactorValue | FactorValue
FlowRateChromatogram | FlowRateChromatogram | FlowRate
FractionationMethod | FractionationMethod | FracMeth
FractionIdentifier | FractionIdentifier | FracID
FractionationFraction | FractionationFraction | FracFrac
FragmentationMethod | FragmentationMethod | FragMeth
FragmentMassTolerance | FragmentMassTolerance | FragTol
GeneticModification | GeneticModification | GenMod
Genotype | Genotype | Genotype
GradientTime | GradientTime | GradTime
GrowthRate | GrowthRate | GrowthRt
Instrument | Instrument | Instrument
Label | Label | Label
MaterialType | MaterialType | MatType
Modification | Modification | Mod
MS2MassAnalyzer | MS2MassAnalyzer | MS2Anal
NumberOfMissedCleavages | NumberOfMissedCleavages | MissClvg
NumberOfFractions | NumberOfFractions | NumFrac
NumberOfTechnicalReplicates | NumberOfTechnicalReplicates | NumTechRep
NumberOfSamples | NumberOfSamples | NumSamp
NumberOfBiologicalReplicates | NumberOfBiologicalReplicates | NumBioRep
Organism | Organism | Organism
OrganismPart | OrganismPart | OrganismPart
OriginSiteDisease | OriginSiteDisease | OrigSiteDis
PrecursorMassTolerance | PrecursorMassTolerance | PrecTol
PooledSample | PooledSample | PoolSamp
ReductionReagent | ReductionReagent | ReductionReagent
SamplingTime | SamplingTime | SamplingTime
Separation | Separation | Separation
Sex | Sex | Sex
SourceName | SourceName | SrcName
Specimen | Specimen | Spec
SpikedCompound | SpikedCompound | SpkCompd
Staining | Staining | Stain
Strain | Strain | Strain
SyntheticPeptide | SyntheticPeptide | SynthPep
TumorCellularity | TumorCellularity | TumCell
TumorGrade | TumorGrade | TumGr
TumorSize | TumorSize | TumSize
TumorSite | TumorSite | TumSite
TumorStage | TumorStage | TumStage
Time | Time | Time
Temperature | Temperature | Temp
Treatment | Treatment | Treatment
TechnicalReplicate | TechnicalReplicate | TechRep
TechnologyType | TechnologyType | TechType
OutOfScope | OutOfScope | OOS

[drawing]

SPAN_DEFAULT    fgColor:black, bgColor:lightgreen, borderColor:darken
ARC_DEFAULT     color:black, arrowHead:triangle-5

# Color grouping for similar entities
Age                            bgColor:#ffa07a
AncestryCategory               bgColor:#ffa07a
Sex                            bgColor:#ffa07a
DevelopmentalStage             bgColor:#ffa07a
Organism                       bgColor:#ffa07a
OrganismPart                   bgColor:#ffa07a
SourceName                     bgColor:#ffa07a
Specimen                       bgColor:#ffa07a

Disease                        bgColor:#f4a582
AnatomicSiteTumor              bgColor:#f4a582
OriginSiteDisease              bgColor:#f4a582
TumorCellularity               bgColor:#f4a582
TumorGrade                     bgColor:#f4a582
TumorSize                      bgColor:#f4a582
TumorSite                      bgColor:#f4a582
TumorStage                     bgColor:#f4a582

AcquisitionMethod              bgColor:#92c5de
Instrument                     bgColor:#92c5de
FragmentationMethod            bgColor:#92c5de
MS2MassAnalyzer                bgColor:#92c5de
IonizationType                 bgColor:#92c5de
GradientTime                   bgColor:#92c5de
Chromatography                  bgColor:#92c5de

FractionationMethod            bgColor:#e78ac3
FractionIdentifier             bgColor:#e78ac3
FractionationFraction          bgColor:#e78ac3
NumberOfFractions              bgColor:#e78ac3
BiologicalReplicate            bgColor:#e78ac3
TechnicalReplicate             bgColor:#e78ac3
NumberOfBiologicalReplicates   bgColor:#e78ac3
NumberOfTechnicalReplicates    bgColor:#e78ac3
NumberOfSamples                bgColor:#e78ac3
SupplementaryFile              bgColor:#e78ac3

Compound                       bgColor:#66c2a5
ConcentrationOfCompound        bgColor:#66c2a5
SpikedCompound                 bgColor:#66c2a5
SyntheticPeptide               bgColor:#66c2a5

Time                           bgColor:#66c2a5
Temperature                    bgColor:#66c2a5
SamplingTime                   bgColor:#66c2a5

Staining                       bgColor:#66c2a5
EnrichmentMethod               bgColor:#66c2a5
Separation                     bgColor:#66c2a5
Depletion                      bgColor:#66c2a5

CleavageAgent                  bgColor:#66c2a5
AlkylationReagent              bgColor:#66c2a5
ReductionReagens               bgColor:#66c2a5
NumberOfMissedCleavages        bgColor:#66c2a5

Equiv	dashArray:3-3, arrowHead:none, color:blue
OutOfScope dashArray:2-4, arrowHead:none, color:gray
OOS	color:lightgray, bgColor:white