Code

Setup CI/CD Pipeline for MSStats#143

Code

Merged

tonywu1999 merged 59 commits intodevelVitek-Lab/MSstats:develfrom feature/ci-cd-pipelineVitek-Lab/MSstats:feature/ci-cd-pipelineCopy head branch name to clipboardNov 26, 2024

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Commits

Commits on Nov 3, 2024

• Setup CI/CD Pipeline for MSStats

  

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• Added SSH private key

  

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• Change #3

  

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• Added changes #4

  

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• Changes #6

  

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• Added changes #7

  

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• Added changes #8

  

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• Added changes #8

  

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• Added changes for cmake issues

  

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• Added changes #9

  

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• Added changes

  

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• Added changes

  

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• Added changes #10

  

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• Added changes #11

  

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• Added changes #12

  

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• Changes for script run added - monitorinh

  

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Commits on Nov 4, 2024

• Added changes with diff slurm config

  

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• Changes for slurm spec

  

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• Changes for slurm spec #2

  

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• Changes for slurm spec #3

  

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• Changes for slurm spec #4

  

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Commits on Nov 5, 2024

• Added changes for triggering pipeline

  

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• Added changes for slurm job #5

  

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• Added changes for R version change

  

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• Added changes

  

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• Added changes for slurm job

  

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• Added changes for R script

  

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• Added changes for slurm job #6

  

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• Added changes for job name

  

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• Added changes for getting id of job to be monitored

  

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• Typo in file name

  

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• Added changes

  

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• Added changes for R version explicit definition in slurm config

  

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Commits on Nov 12, 2024

• Feedback changes added

  

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• MR Feedbacks

  

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• MR Feedbacks #2 - Added FDR

  

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• Added new directory for logs

  

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• Changed working directory slurm

  

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• Revert changes to directory'

  

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• Added changes for working benchmark file

  

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• Updated paths

  

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• Changes added

  

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Commits on Nov 13, 2024

• Minor modification for testing in local directory

  

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• Added changes to config

  

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• Added FDR changes

  

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• Added changes for threshold

  

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• Changes to awk command

  

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• FDR failure

  

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• Changed Working Directory

  

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• Final changes to job

  

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• Changes for slurm

  

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• Changes to BEnchmark folder

  

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• changes to fdr

  

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• Extract only 4 rows

  

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Commits on Nov 19, 2024

• Added changes for installing packages from devel branches

  

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• Correct branch of MSstats Convert added

  

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• Added changes for devel branch change in name

  

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• Changes for correct boxplots

  

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